Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  137  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45854044--45854140
30
3.2
29
71
8
79
29
26
13
29
1.94
45856600--45856644
12
3.9
11
85
5
63
71
8
4
15
1.28
45862799--45862846
20
2.4
20
67
0
51
33
18
27
20
1.96
45863560--45863665
42
2.5
42
96
1
194
33
12
13
40
1.81
45863648--45863692
14
3.3
14
84
6
65
37
0
13
48
1.42
45867157--45867191
14
2.5
14
85
0
52
14
34
5
45
1.68
45874111--45874145
14
2.5
14
85
0
52
14
34
5
45
1.68
45884247--45884343
30
3.2
31
76
5
110
27
27
15
28
1.96
45887744--45887796
23
2.4
22
76
20
56
9
18
1
69
1.25
45894040--45894136
30
3.2
30
74
8
99
28
15
27
27
1.96
45900813--45900846
13
2.8
12
91
8
52
76
5
2
14
1.09
45901934--45902047
6
18.7
6
72
9
88
73
3
16
6
1.17
45901921--45902044
57
2.2
57
81
8
137
72
3
16
7
1.20
45902002--45902039
13
2.8
13
82
17
51
73
0
18
7
1.06
45901918--45902043
27
4.7
27
66
19
75
71
3
16
8
1.24
45901999--45902069
33
2.2
33
85
10
92
71
1
18
8
1.18
45902051--45902082
12
2.7
12
95
0
55
59
0
21
18
1.38
45905620--45905680
20
3.0
20
79
9
70
27
22
13
36
1.92
45905620--45905675
10
5.5
10
72
10
51
28
25
14
32
1.94
45918241--45918288
14
3.4
14
85
0
60
43
6
31
18
1.75
45920092--45920160
29
2.4
29
97
0
129
37
14
10
37
1.80
45921938--45922034
30
3.2
30
76
2
97
27
26
16
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45924567--45924612
16
3.1
14
82
14
56
76
2
17
4
1.06
45924698--45924731
12
2.8
12
95
0
59
58
0
26
14
1.36
45924716--45924775
30
2.0
31
83
9
79
58
1
25
15
1.46
45926086--45926130
14
3.3
14
78
6
56
35
0
15
48
1.45
45927108--45927167
29
2.1
29
93
0
102
41
30
0
28
1.56
45927114--45927161
15
3.3
15
73
5
53
43
27
0
29
1.55
45928457--45928553
30
3.2
30
76
2
106
27
27
16
27
1.97
45931007--45931055
20
2.3
20
82
10
53
32
8
14
44
1.74
45934720--45934764
14
3.3
14
78
6
56
35
0
15
48
1.45
45935934--45935982
12
3.8
12
75
19
53
77
2
4
16
1.01
45935935--45935987
28
1.9
28
92
3
90
77
3
3
15
1.06
45939251--45939312
10
5.9
10
74
10
52
33
32
3
30
1.74
45939251--45939313
21
3.0
21
88
2
90
33
33
3
30
1.74
45942866--45942926
10
6.1
10
74
12
54
32
13
24
29
1.93
45942867--45942927
20
3.0
20
83
9
79
32
13
26
27
1.93
45944996--45945030
18
1.9
18
88
11
54
22
20
0
57
1.41
45945903--45945982
28
2.8
27
80
12
81
8
15
5
71
1.28
45945975--45946000
11
2.4
11
100
0
52
15
0
7
76
0.99
45947328--45947388
20
3.0
20
81
9
70
34
11
26
27
1.91
45958478--45958530
23
2.4
22
76
20
56
9
18
1
69
1.25
45959962--45960109
72
2.0
73
81
3
174
29
28
16
25
1.97
45960296--45960327
16
2.0
16
100
0
64
50
25
12
12
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45962360--45962419
18
3.2
18
75
11
66
6
16
3
73
1.18
45963349--45963377
13
2.2
13
100
0
58
13
0
6
79
0.93
45964852--45964883
16
2.0
16
100
0
64
50
25
12
12
1.75
45970436--45970480
14
3.3
14
84
6
56
35
2
13
48
1.54
45973371--45973417
20
2.3
20
81
0
58
23
12
34
29
1.92
45983935--45983993
20
3.0
20
73
9
66
25
28
13
32
1.94
46000550--46000596
20
2.3
20
85
0
67
29
36
12
21
1.91
46003105--46003158
20
2.7
19
85
2
72
25
29
14
29
1.95
46011495--46011530
11
3.3
11
92
7
56
13
2
8
75
1.15
46014906--46014931
12
2.2
12
100
0
52
15
0
7
76
0.99
46020236--46020288
23
2.4
22
76
20
56
9
18
1
69
1.25
46023938--46023972
18
1.9
18
88
11
54
22
20
0
57
1.41
46024905--46024933
13
2.1
14
93
6
51
13
3
6
75
1.13
46030608--46030726
62
1.9
61
91
1
193
20
18
20
41
1.91
46032637--46032719
30
2.8
30
84
12
109
27
18
33
20
1.96
46039971--46040067
42
2.3
42
89
1
142
57
5
22
14
1.57
46040082--46040120
18
2.2
18
90
0
60
56
0
28
15
1.40
46040135--46040173
18
2.1
19
85
4
53
66
2
23
7
1.30
46041752--46041799
20
2.4
21
79
10
64
20
31
18
29
1.97
46044211--46044250
19
2.1
19
85
0
53
25
35
17
22
1.95
46045016--46045043
4
7.0
4
100
0
56
25
0
0
75
0.81
46048126--46048178
23
2.4
22
76
20
56
9
18
1
69
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46056687--46056747
10
6.1
10
74
12
54
32
13
24
29
1.93
46056688--46056748
20
3.0
20
83
9
79
32
13
26
27
1.93
46062994--46063024
13
2.4
13
100
0
62
22
6
16
54
1.64
46065571--46065599
12
2.3
13
94
5
51
24
0
0
75
0.80
46069301--46069360
29
2.1
29
93
0
102
41
30
0
28
1.56
46069307--46069354
15
3.3
15
73
5
53
43
27
0
29
1.55
46070099--46070138
20
2.0
20
85
9
55
17
5
5
72
1.21
46077017--46077104
30
2.9
30
75
0
104
27
28
17
27
1.97
46079713--46079769
11
5.5
10
73
22
55
77
1
17
3
1.00
46079702--46079769
21
3.2
20
80
12
66
76
2
17
2
1.04
46079713--46079769
5
11.0
5
77
17
55
77
1
17
3
1.00
46079713--46079769
16
3.7
14
80
17
60
77
1
17
3
1.00
46079824--46079856
12
2.8
12
95
0
57
45
12
12
30
1.78
46082139--46082186
15
3.3
15
73
5
53
29
0
27
43
1.55
46082135--46082192
29
2.0
29
93
0
98
27
0
29
43
1.55
46083616--46083703
30
2.9
30
70
0
86
29
28
14
27
1.95
46088039--46088123
30
2.8
30
78
0
107
28
16
25
29
1.97
46088741--46088860
43
2.8
42
76
10
127
25
20
27
27
1.99
46088741--46088904
85
1.9
85
80
4
188
26
19
26
28
1.99
46090589--46090732
49
2.9
49
84
4
200
26
27
20
25
1.99
46092727--46092854
64
2.0
65
96
1
240
29
21
25
22
1.99
46094402--46094498
30
3.2
31
73
5
101
27
28
15
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46094591--46094663
36
2.0
36
100
0
146
38
10
8
42
1.70
46095430--46095454
6
4.2
6
100
0
50
68
16
0
16
1.22
46104707--46104769
5
12.0
5
79
15
58
76
3
17
3
1.05
46104707--46104769
11
6.0
10
74
20
58
76
3
17
3
1.05
46104844--46104899
18
3.1
18
79
5
60
67
3
19
8
1.32
46104850--46104931
30
2.7
31
78
12
89
62
2
21
13
1.43
46107034--46107130
30
3.2
30
76
2
97
27
28
15
27
1.96
46132956--46133005
14
3.4
14
76
10
55
16
6
4
74
1.17
46132956--46133014
17
4.5
13
75
20
52
15
5
5
74
1.17
46143911--46144007
30
3.2
30
77
2
106
28
15
26
28
1.96
46144680--46144728
21
2.4
20
89
3
71
14
18
22
44
1.85
46144951--46144975
13
1.9
13
100
0
50
28
0
8
64
1.22
46145699--46145742
22
2.0
22
95
0
79
34
4
36
25
1.76
46149283--46149329
20
2.3
20
85
0
67
29
36
12
21
1.91
46152063--46152159
42
2.3
42
89
1
151
59
3
22
14
1.49
46152163--46152215
18
2.9
18
74
0
61
56
0
30
13
1.37
46152154--46152240
36
2.4
36
80
0
102
64
2
22
10
1.36
46161910--46161954
10
4.4
10
83
5
54
48
22
15
13
1.79
46161910--46161957
21
2.3
21
89
3
71
50
22
14
12
1.77
46162525--46162589
10
6.5
10
71
13
53
24
21
15
38
1.92
46162525--46162578
20
2.7
20
85
0
72
25
20
16
37
1.93
46162525--46162598
30
2.5
30
84
8
80
22
20
17
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46162525--46162589
20
3.2
20
73
16
62
24
21
15
38
1.92
46164760--46164802
17
2.6
16
78
10
50
72
2
0
25
0.97
46164769--46164804
18
2.0
18
89
10
56
75
2
0
22
0.94
46171218--46171277
22
2.7
23
73
19
63
66
6
0
26
1.16
46171227--46171260
4
8.0
4
90
9
50
73
2
0
23
0.97
46175439--46175482
22
2.0
22
95
0
79
25
36
4
34
1.76
46177648--46177703
30
1.9
28
85
7
76
12
30
3
53
1.55
46178768--46178793
10
2.6
10
100
0
52
23
0
7
69
1.14
46178767--46178795
10
2.7
11
89
10
51
24
0
6
68
1.13
46181766--46181829
31
2.1
31
100
0
128
39
25
17
18
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343