genome.fa.s10.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  96  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32024648--32024832	40	4.6	40	81	8	191	25	27	22	24	2.00
32024648--32024832	79	2.3	81	80	6	207	25	27	22	24	2.00
32032723--32032902	39	4.6	39	82	6	195	25	28	21	24	1.99
32039801--32039911	25	4.4	25	87	4	154	27	23	19	28	1.98
32039958--32040032	20	3.8	20	87	6	102	33	18	10	37	1.86
32039958--32040011	11	5.3	11	70	17	53	31	20	11	37	1.88
32042407--32042432	5	5.2	5	100	0	52	80	0	0	19	0.71
32048044--32048394	46	7.4	48	76	10	273	28	19	28	23	1.98
32048080--32048401	100	3.4	94	80	12	306	28	18	29	23	1.98
32051310--32051360	22	2.3	22	100	0	102	35	17	7	39	1.79
32053317--32053347	15	2.1	15	93	0	53	54	25	0	19	1.44
32058109--32058138	7	4.3	7	91	0	51	40	26	0	33	1.57
32058313--32058350	20	1.9	20	88	0	58	36	31	13	18	1.89
32065107--32065138	13	2.4	14	94	5	57	50	21	6	21	1.71
32067663--32067835	93	1.9	93	93	0	301	27	29	21	21	1.99
32067656--32067831	46	3.8	46	78	12	198	28	28	21	21	1.98
32067707--32067850	46	3.1	45	73	18	127	29	27	20	22	1.98
32070804--32070855	23	2.3	23	89	0	86	42	36	9	11	1.74
32072553--32072601	22	2.2	22	96	0	89	40	24	6	28	1.79
32072984--32073037	25	2.2	25	82	0	63	24	14	27	33	1.94
32080563--32080738	46	3.8	44	76	10	156	21	30	20	28	1.98
32083993--32084210	46	4.7	46	79	12	191	28	21	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32083993--32084251	92	2.8	94	77	11	262	29	20	27	23	1.98
32085254--32085311	28	2.0	28	87	9	82	20	22	41	15	1.90
32085585--32085630	23	2.0	23	100	0	92	43	8	13	34	1.74
32089586--32089783	50	4.0	50	82	1	218	28	26	19	25	1.99
32096286--32096508	119	1.9	120	83	6	292	25	27	21	24	1.99
32096284--32096508	40	5.7	40	84	6	278	25	28	21	24	1.99
32104308--32104532	40	5.7	40	85	6	269	25	27	21	24	1.99
32104310--32104525	119	1.8	120	83	7	287	25	27	21	25	1.99
32109752--32109936	40	4.6	40	93	1	309	23	23	27	25	2.00
32109748--32109968	80	2.8	80	89	3	331	26	22	25	25	2.00
32111988--32112158	46	3.7	46	82	10	183	21	28	20	29	1.98
32113891--32113949	25	2.3	26	85	8	77	27	28	16	27	1.97
32118860--32118898	19	2.1	19	95	0	69	15	23	10	51	1.73
32121289--32121351	30	2.1	30	96	0	117	57	15	3	23	1.53
32123956--32124195	49	4.8	49	79	3	273	29	26	18	26	1.98
32123964--32124195	100	2.3	99	85	2	313	29	26	17	26	1.98
32128538--32128624	20	4.3	21	72	17	67	25	2	3	68	1.16
32128538--32128640	29	3.5	29	75	11	95	23	1	2	71	1.09
32128538--32128625	11	8.7	10	73	18	58	25	2	3	69	1.16
32129145--32129189	19	2.4	18	85	3	54	33	2	4	60	1.29
32129220--32129279	23	2.8	21	74	18	68	38	1	1	58	1.18
32135314--32135405	32	3.2	31	62	28	76	28	8	5	57	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32135292--32135412	54	2.2	54	95	0	215	28	8	6	57	1.53
32139393--32139419	2	13.5	2	100	0	54	51	0	0	48	1.00
32139537--32139743	28	7.4	28	93	1	326	26	11	28	34	1.91
32144628--32144678	26	2.0	26	88	0	75	52	0	15	31	1.43
32146955--32147240	39	7.3	39	82	6	301	26	31	30	11	1.92
32146955--32147240	78	3.7	79	82	5	339	26	31	30	11	1.92
32146957--32147241	117	2.4	116	84	3	358	26	31	30	11	1.92
32153323--32153400	40	2.0	40	86	0	111	29	23	16	30	1.96
32161037--32161218	27	6.7	26	70	17	93	28	15	25	30	1.96
32161148--32161247	26	3.5	28	78	12	98	27	13	27	33	1.93
32177331--32177533	27	7.6	27	85	5	241	29	28	14	27	1.95
32183880--32184091	57	3.7	57	72	5	203	34	19	15	31	1.92
32183876--32184132	57	4.5	57	71	6	178	33	19	16	29	1.94
32183876--32184134	115	2.3	115	92	0	419	33	19	16	30	1.94
32184950--32185013	31	2.1	31	93	0	110	26	26	6	40	1.79
32189127--32189169	21	2.0	22	90	4	70	44	0	2	53	1.13
32202426--32202450	12	2.1	12	100	0	50	0	44	0	56	0.99
32202570--32202651	26	3.2	26	92	0	128	37	23	4	34	1.76
32206575--32206633	24	2.5	24	85	0	82	32	32	18	16	1.94
32206776--32206835	24	2.5	24	88	0	93	33	33	16	16	1.92
32206674--32207267	171	3.4	171	90	2	861	32	27	21	18	1.96
32206947--32207006	24	2.5	24	88	0	93	35	31	16	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32208461--32208501	18	2.2	19	86	4	57	65	0	4	29	1.13
32211447--32211496	24	2.1	24	84	0	64	0	34	0	66	0.92
32211462--32211513	18	2.8	18	85	14	70	1	28	0	69	0.99
32214077--32214181	31	3.4	30	69	12	88	56	7	2	33	1.43
32214069--32214186	61	2.0	61	89	1	184	54	9	2	33	1.46
32218842--32218943	37	2.8	36	79	7	107	44	32	8	14	1.76
32220457--32220490	16	2.1	16	100	0	68	52	0	11	35	1.38
32224692--32224812	47	2.7	46	78	5	120	27	31	17	23	1.97
32224736--32224855	47	2.5	47	81	11	122	24	32	17	25	1.97
32224780--32224953	94	1.9	94	89	4	271	22	29	20	27	1.99
32231691--32231811	47	2.6	47	95	0	215	28	28	7	34	1.84
32234544--32234604	30	2.0	30	87	6	88	26	32	21	19	1.97
32238162--32238223	27	2.3	27	88	0	88	24	19	12	43	1.86
32242959--32243000	18	2.4	18	84	4	59	69	0	9	21	1.17
32252766--32252923	76	2.1	76	93	0	271	46	18	7	27	1.76
32253016--32253376	158	2.3	156	80	7	383	31	14	14	38	1.87
32265682--32265826	76	1.9	76	80	5	168	48	10	12	28	1.74
32266329--32266430	42	2.4	42	86	3	132	25	50	1	22	1.60
32274731--32274792	29	2.1	29	87	0	88	14	22	38	24	1.91
32284925--32284996	28	2.6	28	84	6	85	59	1	5	33	1.29
32285120--32285330	23	9.3	21	66	22	81	54	4	6	34	1.46
32285400--32285567	3	55.0	3	66	19	57	60	4	3	31	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32285457--32285543	28	3.4	25	71	25	67	57	4	2	35	1.32
32285468--32285507	20	2.0	21	85	14	57	57	5	0	37	1.21
32285447--32285542	26	4.0	23	72	21	56	56	6	2	35	1.36
32285510--32285565	28	2.0	29	85	3	78	64	5	0	30	1.16
32287342--32287738	80	5.0	80	73	12	302	33	20	16	29	1.94
32287520--32287750	73	3.2	72	83	3	300	34	20	15	29	1.94
32299729--32299769	15	2.9	13	83	16	55	60	7	0	31	1.24
32299735--32299775	15	2.7	15	100	0	82	58	7	0	34	1.26
32300634--32300678	24	2.0	24	86	8	67	57	4	2	35	1.31
32300641--32300726	28	3.4	25	72	24	65	56	4	2	36	1.33
32300652--32300691	20	2.0	21	85	14	57	57	5	0	37	1.21
32300631--32300726	23	4.0	23	72	21	72	56	5	2	36	1.34
32300694--32300749	28	2.0	29	82	10	71	62	5	1	30	1.28
32300810--32300855	18	2.6	18	82	6	58	56	0	6	36	1.25
32301454--32301508	22	2.6	20	76	20	58	70	1	14	12	1.24
32303167--32303342	46	3.8	46	76	12	180	21	19	28	29	1.98
32303163--32303333	93	1.8	93	91	0	279	21	19	29	28	1.98
32307840--32307900	29	2.1	30	90	3	97	26	1	13	59	1.44
32311654--32311746	46	2.0	46	89	4	143	37	8	8	45	1.66
32314893--32315034	48	3.0	48	85	2	178	39	33	9	16	1.82
32314943--32315290	177	2.0	177	90	0	552	41	33	12	12	1.81
32315106--32315210	48	2.2	47	83	6	122	38	33	13	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32316076--32316100	2	12.5	2	100	0	50	52	0	0	48	1.00
32317628--32317673	21	2.2	21	84	0	56	23	4	8	63	1.42
32323773--32323826	27	2.0	27	100	0	108	25	33	18	22	1.97
32325208--32325284	22	3.5	22	76	13	68	35	9	18	37	1.82
32325587--32325695	36	3.1	36	72	6	96	23	22	20	33	1.97
32325616--32325702	35	2.4	36	79	5	106	21	24	21	32	1.98
32325550--32325705	72	2.2	73	82	4	192	23	21	19	35	1.96
32327822--32327873	23	2.3	23	100	0	104	23	9	13	53	1.68
32331065--32331188	36	3.5	35	75	8	115	24	22	18	34	1.96
32331376--32331909	228	2.4	226	84	5	713	38	11	7	42	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343