genome.fa.s10.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  105  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35149891--35150061	93	1.8	93	91	0	279	21	18	28	30	1.97
35150291--35150328	19	2.0	20	85	15	53	36	0	23	39	1.55
35157416--35157588	46	3.7	46	79	13	210	21	20	28	29	1.98
35157413--35157583	93	1.8	93	94	0	306	21	21	29	28	1.98
35157812--35157849	19	2.0	20	85	15	53	36	0	23	39	1.55
35169397--35170054	327	2.0	327	99	0	1289	32	7	19	40	1.79
35177471--35177648	40	4.5	40	88	3	236	25	23	27	23	2.00
35186659--35186839	100	1.8	100	89	3	283	29	24	19	25	1.99
35186614--35186841	49	4.6	49	82	5	273	29	25	19	25	1.98
35203767--35203882	41	2.7	42	82	7	146	31	26	16	25	1.96
35203757--35203884	43	3.0	42	80	8	152	31	27	16	25	1.96
35206994--35207036	21	2.0	21	82	8	52	6	6	46	39	1.58
35207069--35207130	27	2.3	27	88	5	90	17	22	25	33	1.96
35208664--35208710	16	2.9	16	100	0	94	25	12	29	31	1.93
35215045--35215074	14	2.2	14	94	5	53	33	6	20	40	1.78
35224502--35224563	31	2.0	31	96	0	115	29	24	1	45	1.63
35228323--35228352	14	2.1	15	93	6	53	43	10	0	46	1.37
35238617--35238662	21	2.1	23	88	8	69	21	47	19	10	1.80
35240169--35240207	6	6.5	6	90	0	60	15	2	2	79	0.95
35243119--35243151	13	2.6	13	90	4	50	30	3	12	54	1.52
35251729--35251912	40	4.7	40	80	7	198	25	26	22	25	2.00
35251729--35251912	79	2.3	81	80	9	200	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35259133--35259217	17	4.8	16	77	21	73	20	2	0	77	0.88
35259133--35259218	6	15.0	6	78	11	76	19	2	0	77	0.87
35259137--35259218	5	15.8	5	80	16	80	19	2	0	78	0.87
35259137--35259218	26	3.2	26	78	18	91	19	2	0	78	0.87
35264011--35264039	14	2.0	15	93	6	51	51	20	0	27	1.47
35270866--35270919	6	8.8	6	80	11	65	50	14	16	18	1.79
35271321--35271434	27	4.3	27	83	4	133	23	21	20	34	1.97
35271388--35271557	27	6.2	28	73	7	116	27	10	22	39	1.87
35271416--35271559	54	2.6	54	82	3	164	28	8	22	40	1.83
35271538--35271651	27	4.2	27	87	0	165	39	5	22	32	1.77
35271513--35271652	54	2.6	54	82	2	156	38	7	21	32	1.81
35271658--35271752	27	3.5	27	79	0	109	28	6	22	43	1.77
35279855--35279888	17	1.9	18	88	5	52	50	5	5	38	1.51
35284019--35284049	15	2.1	15	94	5	55	3	41	0	54	1.16
35286861--35287064	45	4.5	45	91	1	329	25	20	17	36	1.94
35288834--35288882	24	2.0	24	100	0	98	44	4	8	42	1.53
35294003--35294123	46	2.7	46	88	1	163	17	22	16	43	1.87
35294134--35294301	45	3.7	45	87	1	239	27	20	16	35	1.94
35294133--35294303	90	1.9	90	91	2	281	26	21	16	35	1.95
35297446--35297688	49	4.9	49	83	2	315	25	18	26	28	1.98
35297448--35297677	100	2.3	98	87	2	316	26	18	26	29	1.98
35299524--35299555	16	2.0	16	93	0	55	3	12	0	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35300642--35300689	23	2.1	23	84	7	62	39	4	2	54	1.32
35300690--35300728	19	2.1	18	85	4	51	41	0	5	53	1.23
35305788--35305987	108	1.8	109	87	5	298	35	16	25	23	1.95
35309526--35309698	46	3.7	46	77	13	201	21	20	28	30	1.98
35309523--35309693	93	1.8	93	93	0	297	21	20	29	29	1.98
35309923--35309960	19	2.0	20	85	15	53	39	0	21	39	1.53
35316130--35316381	55	4.8	53	77	6	192	36	16	23	23	1.94
35316134--35316334	108	1.8	110	84	4	273	34	16	23	24	1.95
35320284--35320369	44	2.0	44	92	0	145	31	31	17	19	1.95
35327698--35327967	47	5.8	46	70	13	151	26	20	30	23	1.98
35327703--35328017	94	3.4	92	77	6	285	26	20	29	23	1.99
35334503--35334718	47	4.7	46	73	13	165	26	19	28	25	1.99
35334503--35334770	94	2.9	94	80	7	276	26	20	28	24	1.99
35339425--35339594	46	3.7	46	75	16	179	31	29	17	21	1.96
35339433--35339604	93	1.8	93	88	0	263	30	29	18	22	1.97
35343657--35343786	49	2.7	49	82	3	163	24	23	18	33	1.97
35343757--35343930	46	3.7	45	80	5	168	24	24	18	32	1.97
35343754--35343931	92	1.9	95	82	5	229	24	24	18	33	1.97
35344580--35344630	20	2.7	18	82	14	59	37	21	0	41	1.54
35348023--35348056	18	1.9	18	88	5	52	41	5	8	44	1.60
35348102--35348139	18	2.1	19	85	5	51	42	13	0	44	1.43
35357283--35357330	23	2.1	23	85	11	64	35	2	4	58	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35357282--35357330	22	2.1	24	78	17	59	34	2	4	59	1.28
35361844--35361908	28	2.5	25	75	22	62	49	0	1	49	1.10
35364919--35364962	23	2.0	21	86	8	61	63	6	2	27	1.31
35364950--35364983	16	2.1	16	94	0	59	50	8	2	38	1.49
35369932--35369973	19	2.2	19	91	0	66	23	33	28	14	1.94
35370138--35370189	19	2.7	19	96	0	95	25	38	25	11	1.89
35373974--35374125	43	3.5	44	83	5	170	28	15	23	32	1.95
35376413--35376532	58	2.1	58	98	0	231	27	20	24	27	1.99
35376494--35376674	48	3.9	48	72	10	176	28	25	20	25	1.99
35376959--35377017	30	2.0	30	83	6	75	35	25	3	35	1.73
35383471--35383730	40	6.6	40	88	2	339	22	27	22	26	1.99
35386624--35386752	28	4.5	28	88	2	177	32	25	12	29	1.92
35386624--35386752	29	4.5	29	86	4	165	32	25	12	29	1.92
35386624--35386752	57	2.3	57	89	2	188	32	25	12	29	1.92
35392411--35392538	29	4.5	28	88	2	175	32	25	12	28	1.92
35392410--35392538	57	2.3	57	87	2	188	32	26	12	28	1.92
35400631--35400890	40	6.6	40	91	2	393	23	27	23	26	2.00
35400631--35400886	79	3.2	80	89	3	394	23	28	23	25	2.00
35400664--35400890	119	1.9	119	94	0	400	24	27	22	25	2.00
35417108--35417285	52	3.5	51	87	6	247	28	15	28	28	1.96
35424046--35424394	49	7.2	49	94	2	611	32	8	28	30	1.87
35424046--35424394	145	2.4	145	97	0	653	32	8	28	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35424046--35424394	96	3.6	96	95	3	607	32	8	28	30	1.87
35426756--35426780	10	2.5	10	100	0	50	40	28	0	32	1.57
35427535--35427609	26	2.9	26	85	0	105	37	24	21	17	1.94
35427590--35427650	25	2.3	27	83	5	72	36	21	24	18	1.95
35427762--35427813	27	1.9	27	84	7	70	30	19	21	28	1.97
35439478--35439659	49	3.7	49	82	2	229	28	26	19	24	1.99
35439461--35439657	100	2.0	100	91	0	322	29	25	19	24	1.99
35439905--35439958	27	2.0	27	85	0	72	38	14	7	38	1.75
35442405--35442469	29	2.3	29	86	2	87	44	3	24	27	1.68
35443014--35443142	46	2.8	48	76	10	131	22	17	25	34	1.95
35445746--35445908	42	3.7	45	79	8	174	32	28	18	20	1.96
35451421--35451460	18	2.2	18	86	0	53	57	15	5	22	1.57
35451421--35451447	12	2.2	12	100	0	54	59	14	0	25	1.36
35455801--35455852	21	2.5	20	82	11	61	32	1	21	44	1.63
35462080--35462188	43	2.5	42	85	7	139	29	22	15	32	1.95
35467066--35467113	20	2.4	20	96	0	87	47	14	31	6	1.69
35476908--35476943	18	2.0	18	100	0	72	38	16	5	38	1.72
35477405--35477431	14	1.9	14	100	0	54	59	11	7	22	1.56
35496756--35496814	26	2.3	27	82	8	77	25	13	20	40	1.89
35504082--35504127	22	2.1	22	100	0	92	28	13	8	50	1.70
35509854--35510175	47	6.7	49	76	13	206	22	31	18	27	1.97
35509851--35510214	47	7.7	46	74	14	179	23	30	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35509952--35510214	142	1.8	142	84	8	356	23	29	18	28	1.98
35509851--35510218	94	3.9	94	76	11	325	23	30	18	27	1.98
35510886--35510910	13	1.9	13	100	0	50	64	16	4	16	1.44
35516387--35516430	22	2.0	22	91	4	72	27	27	36	9	1.87
35516391--35516448	22	2.6	22	86	0	71	31	29	27	12	1.92
35517548--35517870	47	6.8	47	73	11	205	24	30	17	27	1.97
35517552--35517868	95	3.3	94	75	13	247	23	30	17	27	1.97
35519811--35519884	20	3.7	20	73	10	62	43	18	24	13	1.86
35520197--35520230	16	2.1	16	94	0	59	50	41	0	8	1.34
35525573--35525597	13	1.9	13	100	0	50	24	4	0	72	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343