genome.fa.s10.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  186  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61729745--61729922	27	6.6	27	83	3	205	26	15	28	29	1.96
61729746--61729901	82	1.9	81	88	3	233	26	15	28	29	1.96
61729742--61729922	82	2.2	81	83	2	229	27	15	27	29	1.96
61737771--61737948	27	6.6	27	83	3	205	26	15	28	29	1.96
61737772--61737927	82	1.9	81	88	3	233	26	15	28	29	1.96
61737768--61737948	82	2.2	81	83	2	229	27	15	27	29	1.96
61739296--61739419	49	2.5	51	89	2	180	29	26	19	25	1.98
61739671--61739724	27	2.0	27	85	0	72	38	14	7	38	1.75
61743924--61743966	7	6.1	7	78	10	52	44	41	0	13	1.44
61750363--61750722	47	7.6	47	91	2	567	31	9	30	28	1.88
61750841--61750919	37	2.1	37	86	4	106	25	18	29	26	1.98
61756680--61756709	15	2.1	15	93	6	53	20	10	30	40	1.85
61764149--61764275	27	4.7	27	84	0	164	23	18	19	38	1.93
61765388--61765533	27	5.4	27	84	0	184	25	20	19	34	1.96
61777460--61777548	28	3.1	28	83	3	115	28	14	31	25	1.95
61777460--61777534	29	2.6	28	87	4	105	28	14	32	25	1.95
61785426--61785501	29	2.7	28	83	4	89	30	13	32	23	1.93
61785434--61785513	29	2.8	28	81	3	88	27	13	35	23	1.93
61799444--61799513	18	3.9	18	83	3	88	47	12	18	21	1.82
61799446--61799509	24	2.7	23	77	15	60	46	12	18	21	1.82
61799828--61799906	26	3.0	27	88	3	115	37	17	15	29	1.90
61799914--61799999	27	3.2	27	86	6	129	36	19	13	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61799845--61799976	70	1.9	69	85	4	185	37	22	11	28	1.89
61803650--61803775	28	4.5	28	95	1	209	26	13	28	31	1.94
61811792--61811917	28	4.5	28	95	1	209	26	13	28	31	1.94
61814558--61814593	18	2.0	18	100	0	72	44	11	0	44	1.39
61816075--61816129	26	2.2	25	84	12	69	41	1	9	47	1.46
61818344--61818424	27	3.0	27	72	0	81	27	17	18	37	1.93
61820270--61820311	17	2.5	17	100	0	84	28	23	11	35	1.91
61826486--61826558	28	2.6	29	82	4	87	27	13	30	28	1.94
61833445--61833546	31	3.1	31	84	9	105	27	22	12	37	1.91
61833427--61833529	38	2.7	38	95	0	179	26	23	12	37	1.90
61833755--61833862	50	2.2	48	85	8	137	29	22	19	28	1.98
61833755--61833862	25	4.4	25	84	5	114	29	22	19	28	1.98
61833910--61833956	20	2.3	20	89	7	69	36	19	10	34	1.86
61841425--61841488	31	2.1	31	87	0	92	25	23	12	39	1.90
61841697--61841779	25	3.4	24	86	8	105	25	22	22	28	1.99
61841827--61841873	20	2.3	20	89	7	69	34	17	10	38	1.84
61872853--61872945	45	2.1	45	89	0	141	29	31	12	26	1.93
61877183--61877397	47	4.6	47	79	13	223	31	27	18	22	1.97
61877175--61877430	46	5.5	45	77	14	245	30	28	18	22	1.97
61877183--61877447	93	2.8	93	91	0	413	30	27	18	22	1.98
61879829--61879891	15	4.2	15	78	8	74	60	15	12	11	1.59
61879828--61879887	30	2.0	30	90	6	95	61	16	11	10	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61882868--61883042	46	3.8	46	75	13	187	29	29	20	20	1.98
61882922--61883096	47	3.7	47	78	10	214	29	29	19	22	1.98
61882875--61883086	93	2.3	93	94	0	370	28	29	19	21	1.98
61885486--61885518	16	2.1	16	94	0	57	39	15	24	21	1.91
61894281--61894420	43	3.3	41	80	9	138	31	25	13	30	1.94
61913671--61913733	6	10.3	6	74	16	58	49	14	19	17	1.80
61913851--61914013	28	6.0	27	82	6	161	36	22	22	19	1.95
61913851--61914013	55	3.0	54	81	6	161	36	22	22	19	1.95
61914175--61914236	22	2.8	22	78	9	72	32	22	25	19	1.97
61914590--61914648	27	2.2	27	84	0	73	32	15	22	30	1.94
61914599--61914741	27	5.3	27	84	5	173	27	18	18	35	1.94
61914761--61915038	27	10.3	27	81	5	233	29	9	21	39	1.85
61914726--61914881	81	1.9	80	81	3	188	28	8	25	38	1.84
61914774--61914958	80	2.3	80	81	4	203	28	9	23	38	1.86
61922251--61922444	40	4.8	40	90	0	271	26	22	27	23	1.99
61930277--61930430	40	3.8	40	90	0	227	27	23	26	22	2.00
61944012--61944162	71	2.1	71	91	2	241	30	29	17	23	1.97
61944082--61944303	103	2.2	103	91	3	358	31	31	18	18	1.95
61944012--61944200	71	2.6	70	86	7	227	30	30	17	21	1.96
61944175--61944225	26	2.0	26	96	0	93	29	35	23	11	1.90
61944632--61944695	30	2.2	29	81	10	76	29	28	6	35	1.82
61944639--61944695	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61951553--61951604	26	2.0	26	92	0	86	28	34	21	15	1.94
61951565--61951715	72	2.1	71	91	2	241	30	29	16	23	1.96
61951634--61951857	104	2.2	104	93	1	378	31	31	19	17	1.95
61952186--61952249	30	2.2	29	81	10	76	29	28	6	35	1.82
61952193--61952249	30	1.9	30	85	3	80	29	24	7	38	1.82
61959753--61959907	66	2.3	67	83	5	181	19	29	16	34	1.94
61959880--61960006	68	1.9	68	81	6	159	22	28	16	33	1.95
61961998--61962026	12	2.3	13	94	5	51	20	6	6	65	1.40
61965190--61965365	46	3.8	46	79	14	209	20	20	29	29	1.98
61965187--61965358	93	1.8	93	95	2	310	20	20	29	28	1.98
61987003--61987052	24	2.3	20	83	16	57	36	6	8	50	1.57
61987010--61987062	24	2.2	24	100	0	106	41	7	11	39	1.69
61992511--61992695	40	4.6	40	93	1	300	24	23	26	25	2.00
61992507--61992727	80	2.8	79	87	4	302	26	21	25	26	2.00
61992954--61992997	22	2.0	21	83	16	54	31	18	13	36	1.90
61995384--61995461	6	13.0	6	83	5	86	74	2	3	19	1.09
61997302--61997437	55	2.5	55	81	0	146	17	26	27	28	1.98
62003521--62003686	46	3.6	46	78	8	140	28	18	29	22	1.98
62015086--62015342	46	5.5	46	77	12	190	28	17	30	24	1.97
62015086--62015401	94	3.3	94	78	11	267	26	18	30	24	1.98
62015265--62015401	49	2.8	49	79	7	161	24	18	30	26	1.98
62017549--62017698	28	5.4	28	90	3	115	25	14	28	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62017574--62017699	28	4.5	28	94	1	209	25	14	28	31	1.95
62022017--62022177	87	1.9	87	89	2	252	42	14	10	32	1.80
62029469--62029540	24	3.0	24	87	0	117	50	6	6	36	1.57
62032181--62032240	27	2.3	26	85	2	75	35	20	23	21	1.96
62041856--62041966	27	4.1	26	81	7	123	18	22	22	36	1.94
62041856--62041966	54	2.1	54	86	3	152	18	22	22	36	1.94
62044646--62044709	34	1.9	33	84	9	85	28	26	18	26	1.98
62058589--62058660	36	2.0	36	91	0	117	38	20	6	33	1.80
62059584--62059627	20	2.2	20	100	0	88	13	29	9	47	1.74
62062604--62062635	16	2.0	16	93	0	55	31	18	3	46	1.65
62064403--62064949	47	11.6	47	93	1	869	29	28	8	33	1.87
62064403--62064949	143	3.9	143	92	1	888	29	28	8	33	1.87
62067474--62067861	50	7.7	51	80	3	419	30	25	17	26	1.98
62067469--62067861	151	2.6	152	91	0	628	30	25	17	26	1.98
62067474--62067858	101	3.8	100	80	2	421	29	25	17	26	1.98
62069134--62069166	17	1.9	18	88	11	52	39	21	9	30	1.84
62075709--62075952	40	6.1	40	83	6	273	25	27	21	25	1.99
62083737--62083960	40	5.7	40	84	6	278	25	27	22	25	2.00
62089215--62089244	15	1.9	16	93	6	53	30	6	16	46	1.73
62090743--62090808	34	2.0	33	82	8	80	24	24	24	27	2.00
62095448--62097673	492	4.6	486	83	5	2627	35	16	19	28	1.93
62101931--62102246	46	6.8	47	72	12	192	23	28	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62102074--62102244	93	1.9	91	84	7	229	22	27	19	30	1.98
62104348--62104564	54	4.0	53	77	8	204	37	16	25	20	1.93
62104348--62104531	55	3.4	54	79	5	201	37	17	25	20	1.93
62106194--62106263	28	2.4	29	97	2	133	30	28	10	31	1.89
62109387--62109505	23	5.1	23	96	1	211	30	21	21	26	1.98
62109556--62109622	20	3.3	20	91	0	107	32	22	11	32	1.90
62113660--62113778	23	5.1	23	96	1	211	30	21	21	26	1.98
62113835--62113889	20	2.8	20	94	0	101	34	20	10	34	1.87
62124165--62124373	28	7.5	28	93	2	314	26	11	27	34	1.91
62126456--62126516	30	2.0	30	83	0	77	31	22	8	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343