Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  329  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105621877--105621940
11
5.7
11
81
3
65
81
0
18
0
0.70
105622084--105622121
16
2.3
17
86
4
51
23
0
2
73
0.95
105622275--105622797
17
29.8
17
67
22
180
33
11
11
43
1.77
105622285--105622338
16
3.2
16
75
14
56
35
14
9
40
1.78
105622284--105622458
38
4.8
38
73
17
131
35
13
9
41
1.77
105622331--105622470
74
1.9
74
82
2
174
39
12
8
40
1.73
105622569--105622754
99
1.9
99
83
6
243
35
7
10
46
1.67
105622776--105622828
20
2.6
20
78
3
70
43
9
7
39
1.65
105624034--105624250
118
1.8
118
90
0
353
28
30
18
23
1.97
105625194--105625255
7
8.9
7
80
15
58
77
0
3
19
0.90
105625184--105625251
27
2.5
27
81
13
77
77
0
2
19
0.89
105630476--105630559
26
3.2
26
96
0
150
33
4
25
36
1.77
105632054--105632106
26
2.0
25
82
13
63
41
22
11
24
1.86
105635279--105635323
3
15.0
3
85
0
63
62
2
4
31
1.27
105635407--105635483
23
3.2
24
81
15
81
61
2
5
31
1.32
105635402--105635639
3
79.7
3
65
17
59
61
5
7
25
1.44
105636771--105636800
6
5.0
6
100
0
60
0
16
0
83
0.65
105637705--105637847
68
2.1
69
98
1
279
25
15
41
18
1.89
105642511--105642544
13
2.6
13
90
0
50
23
14
0
61
1.33
105646028--105646093
31
2.1
31
86
5
89
27
13
10
48
1.75
105646577--105646634
27
2.2
25
80
17
64
29
5
3
62
1.33
105647180--105647264
39
2.2
39
87
4
118
35
10
11
42
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105652257--105652436
84
2.1
84
82
4
220
50
10
7
31
1.64
105653195--105653360
47
3.5
47
77
6
181
33
22
4
39
1.73
105653221--105653367
49
3.0
49
79
7
201
33
21
4
40
1.72
105653927--105653956
15
1.9
16
93
6
53
40
0
3
56
1.16
105660105--105660150
22
2.1
22
100
0
92
21
17
17
43
1.88
105661119--105661164
22
2.1
22
91
0
74
50
4
10
34
1.57
105663188--105663237
23
2.3
20
80
16
55
64
0
4
32
1.12
105680055--105680097
3
14.3
3
100
0
86
67
0
32
0
0.91
105681489--105681723
119
2.0
119
97
0
443
40
17
16
25
1.90
105687469--105687531
29
2.1
31
82
11
78
31
7
11
49
1.67
105700517--105700584
32
2.1
32
86
0
91
33
8
10
47
1.69
105702190--105702261
32
2.2
33
78
11
78
43
19
9
27
1.82
105702243--105702286
23
1.9
23
95
0
79
40
20
13
25
1.89
105703237--105703278
22
1.9
22
95
0
75
35
9
11
42
1.74
105704305--105704385
40
2.0
40
100
0
162
33
12
17
37
1.87
105706094--105706246
51
3.0
51
90
0
243
33
26
9
29
1.89
105706374--105706443
33
2.1
33
86
0
95
24
38
2
34
1.70
105707105--105707315
117
1.8
117
87
2
316
43
26
6
23
1.78
105707484--105707519
16
2.2
16
90
0
54
30
2
27
38
1.71
105708272--105708882
318
1.9
323
89
3
957
25
21
17
34
1.95
105710204--105710528
124
2.5
128
87
4
442
36
11
20
32
1.87
105713399--105713431
2
16.5
2
100
0
66
0
48
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105715075--105715142
29
2.3
31
79
5
77
41
17
8
32
1.80
105715501--105715559
29
2.0
29
100
0
118
42
13
16
27
1.86
105718842--105718866
2
12.5
2
100
0
50
52
0
0
48
1.00
105726882--105726928
21
2.2
22
92
3
78
21
38
19
21
1.94
105733698--105733739
20
2.2
20
87
8
61
64
0
4
30
1.14
105734446--105734485
20
2.0
20
85
5
53
65
5
2
27
1.27
105734474--105734513
20
2.0
21
90
5
64
62
2
5
30
1.29
105735574--105735605
16
2.0
16
100
0
64
62
0
6
31
1.20
105736147--105736195
13
3.8
13
78
5
55
48
0
12
38
1.41
105741283--105741322
19
2.1
19
86
9
55
40
2
0
57
1.12
105741433--105741474
21
2.0
21
86
4
59
59
0
0
40
0.97
105743733--105743778
21
2.1
21
84
8
56
52
4
8
34
1.52
105745724--105745811
41
2.2
40
86
6
117
39
3
5
51
1.43
105748121--105748185
27
2.4
27
80
14
73
30
4
0
64
1.14
105748117--105748167
21
2.5
21
90
3
77
31
5
0
62
1.19
105748627--105748671
18
2.6
18
85
3
56
33
8
6
51
1.59
105748642--105748724
3
27.0
3
71
9
51
30
9
3
56
1.48
105748684--105748724
9
4.7
9
87
6
57
34
7
0
58
1.26
105754208--105754246
21
1.9
21
84
5
53
41
0
0
58
0.98
105754864--105754940
38
2.0
38
100
0
154
24
28
12
33
1.93
105758939--105758973
18
1.9
18
88
11
54
62
0
0
37
0.95
105762106--105762156
3
17.3
3
81
4
59
25
0
39
35
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105763216--105763259
21
2.0
22
83
16
56
50
2
4
43
1.35
105764550--105764608
29
2.0
29
100
0
118
35
30
3
30
1.74
105770272--105770314
15
2.9
14
80
13
50
20
4
2
72
1.14
105771404--105771437
17
2.0
17
94
0
59
44
50
0
5
1.26
105776033--105776066
17
2.0
17
94
0
59
44
50
0
5
1.26
105782608--105782639
16
1.9
17
93
6
57
43
9
6
40
1.62
105782609--105782650
16
2.7
16
85
10
52
50
7
4
38
1.51
105783308--105783341
5
6.8
5
100
0
68
79
0
0
20
0.73
105786847--105786888
12
3.4
12
80
6
57
73
9
2
14
1.18
105786847--105786900
24
2.2
25
93
6
94
70
11
3
14
1.29
105786859--105786899
12
3.4
12
80
12
57
70
12
4
12
1.31
105791687--105791727
21
2.0
21
90
0
64
29
21
29
19
1.98
105796643--105796687
22
2.0
22
100
0
90
42
17
8
31
1.80
105798859--105798886
3
9.3
3
100
0
56
67
0
0
32
0.91
105798994--105799038
15
3.0
15
86
0
63
55
0
13
31
1.38
105802223--105802278
28
2.0
29
82
3
69
62
0
10
26
1.28
105806730--105807037
127
2.4
127
80
1
357
35
21
17
25
1.95
105808903--105809012
26
4.2
26
94
2
177
34
4
24
36
1.76
105810624--105810736
27
4.2
27
85
3
129
16
23
23
36
1.94
105810622--105810736
54
2.1
54
88
3
169
16
23
23
36
1.94
105812159--105812184
8
3.2
8
100
0
52
34
0
65
0
0.93
105820488--105820868
131
2.9
131
88
0
539
30
18
18
33
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105821718--105821760
16
2.8
15
75
6
50
39
18
0
41
1.51
105824231--105824374
64
2.3
63
91
1
225
43
13
17
25
1.85
105827691--105827757
23
2.8
24
82
10
68
46
31
0
22
1.52
105828935--105829272
118
2.8
120
80
12
383
28
6
7
57
1.51
105829293--105829319
3
9.0
3
100
0
54
33
0
0
66
0.92
105829508--105829568
3
21.3
3
75
9
56
27
3
0
68
1.05
105829490--105829554
28
2.2
28
79
15
71
26
3
0
70
1.01
105829507--105829551
17
2.5
19
85
7
58
24
2
0
73
0.95
105830035--105830060
3
8.7
3
100
0
52
30
0
0
69
0.89
105835918--105835974
30
1.9
29
86
10
80
40
35
10
14
1.80
105837220--105837252
12
2.8
12
82
17
50
36
0
0
63
0.95
105837218--105837250
16
2.1
15
94
5
57
36
0
0
63
0.95
105837268--105837416
7
21.4
7
67
20
57
35
5
0
59
1.21
105837380--105837446
27
2.5
28
81
11
77
37
5
0
56
1.24
105837356--105837471
17
6.7
17
64
14
51
36
4
0
58
1.24
105841340--105841382
15
2.9
15
80
16
54
25
25
9
39
1.85
105843535--105844532
500
2.0
499
95
0
1784
31
18
22
26
1.97
105852689--105852798
26
4.2
26
96
0
184
36
23
6
33
1.80
105853823--105853879
30
1.9
29
86
10
80
40
35
10
14
1.80
105855122--105855154
16
2.1
15
94
5
57
36
0
0
63
0.95
105855172--105855316
7
21.4
7
64
23
53
36
5
0
57
1.22
105861128--105861169
19
2.3
19
87
4
59
54
0
2
42
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105861127--105861223
52
1.9
51
85
4
133
53
2
6
38
1.38
105862355--105862379
13
1.9
13
100
0
50
24
24
32
20
1.98
105865192--105865239
24
1.9
26
84
16
66
58
6
0
35
1.23
105866202--105866231
11
2.7
11
100
0
60
10
43
30
16
1.81
105867498--105867800
88
3.5
85
80
12
337
34
20
17
28
1.95
105867722--105868053
75
4.3
75
74
12
269
33
21
18
26
1.96
105867808--105867977
89
1.9
89
91
2
279
31
21
18
28
1.97
105868033--105868067
14
2.5
14
95
0
61
60
8
14
17
1.58
105867641--105868304
161
4.1
161
87
6
930
33
21
18
26
1.96
105868047--105868196
73
2.0
75
88
2
223
31
21
19
28
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343