Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  325  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104679877--104679956
41
2.0
41
97
0
151
32
18
10
38
1.84
104680134--104680176
22
1.9
23
85
4
61
62
4
2
30
1.28
104684480--104684515
9
4.0
9
89
10
56
63
0
0
36
0.94
104684623--104684647
13
1.9
13
100
0
50
64
12
0
24
1.27
104684611--104684667
29
2.0
29
82
0
69
61
8
1
28
1.36
104689910--104689952
19
2.3
19
84
8
52
44
2
0
53
1.13
104691045--104691079
16
2.1
17
89
5
54
68
0
0
31
0.90
104693026--104693061
15
2.4
15
90
0
54
41
16
8
33
1.78
104697945--104698064
51
2.4
51
89
0
177
39
12
21
26
1.89
104703678--104703707
12
2.5
12
100
0
60
76
0
0
23
0.78
104706535--104706907
133
2.8
131
76
8
355
35
13
12
37
1.83
104708779--104708840
20
3.3
17
75
18
52
66
1
6
25
1.25
104708787--104708840
19
2.8
19
75
10
56
66
1
7
24
1.27
104708826--104708881
29
2.0
27
83
13
69
64
0
5
30
1.16
104709023--104709055
3
11.0
3
87
12
50
63
3
0
33
1.10
104711080--104711385
88
3.5
87
88
2
454
26
22
23
27
2.00
104711379--104712276
86
10.4
86
85
3
1094
22
23
21
32
1.98
104712116--104712267
44
3.5
44
72
5
155
18
26
22
32
1.97
104713600--104713634
10
3.5
10
84
0
52
0
14
0
85
0.59
104714273--104714317
11
3.9
11
80
11
54
35
0
2
62
1.08
104716449--104716811
46
7.9
46
88
0
458
40
14
23
21
1.90
104717097--104717129
17
2.0
17
94
5
59
48
0
12
39
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104719866--104719951
31
2.7
32
77
17
81
39
0
4
55
1.20
104719907--104719951
11
3.9
11
80
11
54
35
0
2
62
1.08
104722052--104722279
46
5.0
46
90
1
314
40
14
23
20
1.90
104726339--104726384
19
2.4
19
89
7
67
45
10
21
21
1.82
104728640--104728700
18
3.3
18
79
20
72
67
1
6
24
1.24
104728716--104728768
27
2.0
27
81
7
63
64
1
9
24
1.34
104728827--104728921
3
31.7
3
75
12
88
60
5
3
31
1.35
104731554--104731591
20
1.9
20
88
0
58
18
15
10
55
1.68
104733614--104733692
35
2.3
34
79
12
90
68
1
1
29
1.05
104733599--104733710
27
4.2
25
80
11
98
67
1
0
29
1.06
104733642--104733710
26
2.6
26
82
13
86
66
1
0
31
1.00
104733598--104733710
9
12.4
9
70
22
76
68
1
0
29
1.06
104734427--104734482
9
6.0
9
75
8
58
32
1
3
62
1.23
104741007--104741066
7
8.6
7
96
0
93
30
10
33
26
1.89
104742728--104742868
70
2.0
70
98
0
273
26
3
27
41
1.72
104748024--104748078
25
2.2
25
87
6
76
25
27
14
32
1.95
104748242--104748442
40
5.0
40
94
0
330
25
30
24
19
1.98
104753607--104753661
25
2.2
25
87
6
76
25
27
14
32
1.95
104753824--104754024
40
5.0
40
92
0
312
25
29
24
19
1.99
104769315--104769368
27
2.0
27
100
0
108
33
22
22
22
1.97
104785978--104786025
10
4.8
10
82
10
53
66
2
6
25
1.26
104785976--104786035
20
3.0
19
76
9
66
66
1
6
25
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104786623--104786655
4
8.5
4
86
6
50
42
0
0
57
0.98
104787879--104787931
22
2.3
21
84
15
61
77
0
1
20
0.87
104787877--104787931
20
2.6
21
86
11
69
78
0
1
20
0.85
104787877--104787934
6
8.8
6
82
14
62
77
0
1
20
0.86
104791796--104792132
131
2.6
131
91
0
541
27
16
21
35
1.94
104796453--104796489
13
2.8
13
87
4
56
43
13
0
43
1.44
104801572--104801614
18
2.5
17
75
20
52
58
0
2
39
1.11
104802260--104802287
14
2.0
14
100
0
56
42
0
0
57
0.99
104804199--104804260
19
3.1
19
70
20
63
17
17
17
46
1.84
104804183--104804260
41
1.9
41
94
0
138
17
16
20
44
1.86
104812850--104812891
18
2.3
18
84
8
50
59
11
4
23
1.51
104813092--104813252
3
54.3
3
73
11
111
65
1
3
30
1.16
104813094--104813252
26
5.9
26
68
20
103
65
1
3
30
1.16
104815317--104815362
21
2.1
22
84
4
58
26
0
4
69
1.07
104821097--104821128
5
6.6
5
92
7
57
81
0
0
18
0.70
104821098--104821128
14
2.2
14
100
0
62
80
0
0
19
0.71
104827853--104827905
26
2.0
26
82
7
63
24
15
20
39
1.91
104829392--104829499
26
4.2
26
89
2
164
38
24
4
32
1.76
104829392--104829499
52
2.1
52
94
0
189
38
24
4
32
1.76
104833105--104833178
24
3.4
24
75
17
81
35
2
0
62
1.10
104833108--104833186
17
5.3
15
72
22
60
35
2
0
62
1.09
104833105--104833178
21
3.4
22
75
17
75
35
2
0
62
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104835940--104835986
24
1.9
25
82
4
60
44
6
14
34
1.71
104836479--104836524
11
4.3
11
80
5
58
19
41
6
32
1.77
104837063--104837130
18
3.8
18
88
0
82
33
20
10
35
1.87
104837057--104837135
36
2.2
36
90
0
122
31
20
13
34
1.92
104844164--104844238
6
12.7
6
81
8
82
18
2
0
78
0.86
104844346--104844436
43
2.1
42
84
6
112
32
34
12
20
1.90
104845086--104845140
21
2.6
21
79
2
74
38
7
9
45
1.64
104845119--104845547
17
24.8
17
71
13
218
44
11
10
33
1.75
104845119--104845241
52
2.4
50
81
7
126
43
13
8
34
1.75
104845117--104845537
35
12.1
34
71
16
192
43
11
10
34
1.75
104845255--104845547
71
4.1
73
75
10
225
44
11
11
32
1.77
104846127--104846153
11
2.5
11
100
0
54
22
7
0
70
1.12
104846151--104846204
10
5.2
10
80
14
56
0
22
0
77
0.76
104846149--104846201
14
3.8
13
85
14
63
0
20
0
79
0.74
104846754--104846869
29
3.9
29
74
9
83
46
3
20
29
1.67
104846769--104846869
30
3.4
30
82
4
116
46
3
20
28
1.69
104846865--104846899
14
2.4
15
90
4
54
25
0
2
71
1.00
104847455--104847685
118
2.0
118
90
0
363
23
17
30
29
1.97
104853250--104853295
11
4.3
11
86
5
67
19
43
6
30
1.76
104853240--104853294
22
2.5
22
82
8
69
20
43
3
32
1.69
104854011--104854058
19
2.6
18
78
15
53
22
2
6
68
1.23
104858815--104858861
21
2.2
22
92
3
78
21
19
38
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104863481--104863529
21
2.3
23
82
13
68
55
2
0
42
1.11
104866558--104866638
41
2.0
41
92
0
135
20
9
9
59
1.58
104870235--104870261
13
2.1
13
100
0
54
70
7
0
22
1.12
104870728--104870773
20
2.3
20
81
3
58
28
0
8
63
1.24
104874921--104874969
21
2.3
23
79
13
59
55
4
0
40
1.19
104881847--104881955
54
2.0
54
89
0
164
31
28
13
26
1.94
104893495--104893534
20
2.0
20
95
0
71
35
10
22
32
1.87
104895962--104896045
26
3.2
26
96
0
150
33
4
25
36
1.77
104898937--104898964
6
4.7
6
100
0
56
50
14
0
35
1.43
104900294--104900339
18
2.5
19
80
16
60
28
10
0
60
1.30
104904565--104904596
14
2.4
13
90
10
55
90
6
0
3
0.53
104906797--104908143
75
16.9
75
74
16
984
28
15
20
35
1.93
104906929--104906956
12
2.3
12
100
0
56
14
7
7
71
1.29
104906851--104907115
85
3.0
87
83
5
324
26
15
19
38
1.91
104907045--104907563
74
6.9
73
74
13
313
30
16
20
33
1.94
104907434--104907557
66
1.9
66
89
0
194
31
16
24
28
1.96
104907120--104907650
151
3.4
151
82
9
613
29
15
20
34
1.94
104907498--104907835
88
3.8
88
84
6
477
28
15
19
36
1.92
104907191--104908478
250
5.3
238
80
11
1247
28
16
20
34
1.94
104907893--104907925
16
2.1
16
94
0
57
15
9
6
69
1.34
104907819--104907998
89
2.0
88
89
1
270
25
15
18
41
1.89
104907909--104908398
164
3.1
149
81
13
563
27
18
20
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104907188--104908478
489
2.6
479
83
9
1503
28
16
20
34
1.94
104908149--104908315
75
2.2
73
82
8
194
28
20
18
32
1.96
104908296--104908322
14
1.9
14
100
0
54
14
18
7
59
1.58
104908221--104908625
88
4.6
87
81
8
394
27
17
19
35
1.94
104910497--104910542
19
2.4
19
89
7
67
58
4
6
30
1.43
104910731--104910776
17
2.7
18
86
6
69
54
6
0
39
1.26
104911161--104911204
22
1.9
22
86
9
61
65
4
25
4
1.30
104911454--104911516
18
3.7
17
71
14
58
4
3
17
74
1.12
104912284--104913359
146
7.3
147
82
9
1124
31
21
16
30
1.95
104912279--104913226
368
2.5
370
87
6
1359
31
20
16
31
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343