Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  284  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94109667--94109704
19
2.0
19
100
0
76
21
10
21
47
1.80
94113611--94113657
20
2.3
20
85
7
60
44
19
10
25
1.82
94119582--94119682
27
3.9
27
77
13
122
49
7
16
25
1.73
94119586--94119683
49
2.0
50
91
2
162
47
8
17
26
1.75
94119699--94119766
27
2.5
27
80
4
75
22
25
38
14
1.92
94120258--94120306
17
2.9
17
87
0
71
20
0
6
73
1.04
94120510--94120562
26
2.0
27
92
3
90
24
18
7
49
1.74
94120549--94120583
14
2.6
14
90
4
54
25
5
2
65
1.28
94122021--94122124
53
2.0
53
84
7
140
28
14
25
30
1.95
94122921--94122994
20
3.7
20
90
0
112
21
29
31
17
1.96
94131327--94131438
58
1.9
57
89
5
172
54
1
0
43
1.10
94131463--94131512
24
2.1
23
82
10
57
60
2
2
36
1.20
94134889--94134913
6
4.2
6
100
0
50
16
0
32
52
1.44
94137648--94137765
40
3.0
40
92
0
200
29
28
18
22
1.98
94139819--94139993
46
3.8
47
79
13
209
29
29
19
21
1.98
94139828--94139996
93
1.8
93
92
2
286
28
28
20
21
1.98
94147391--94147523
47
2.8
49
78
14
161
30
27
18
22
1.97
94147943--94148002
30
2.0
30
83
6
77
30
25
8
36
1.85
94151363--94151407
22
2.0
22
83
8
56
22
2
6
68
1.24
94154507--94154535
11
2.5
12
94
5
51
51
0
3
44
1.18
94158929--94160531
630
2.5
631
96
0
2976
32
19
14
33
1.91
94161117--94161275
48
3.3
48
90
1
230
20
14
14
50
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94166275--94166301
3
9.0
3
100
0
54
66
0
0
33
0.92
94166759--94166783
12
2.1
12
100
0
50
52
16
16
16
1.76
94172324--94172357
14
2.4
14
90
9
52
29
8
0
61
1.26
94179386--94179425
20
2.0
20
100
0
80
40
10
25
25
1.86
94181103--94181198
48
2.0
48
95
0
174
43
14
5
36
1.68
94186326--94186351
3
8.7
3
100
0
52
34
0
0
65
0.93
94187829--94187871
18
2.4
18
88
7
61
58
0
0
41
0.98
94189247--94189686
126
3.5
125
81
5
440
33
13
29
23
1.93
94196889--94196942
26
2.1
27
82
6
67
24
14
24
37
1.93
94196906--94196981
26
2.8
27
82
4
82
27
13
22
36
1.91
94198423--94198530
26
4.2
26
91
0
180
36
23
7
33
1.83
94201063--94201109
24
2.0
24
84
16
62
31
0
17
51
1.46
94203252--94203585
41
8.2
41
87
2
449
35
26
19
18
1.95
94203722--94203756
17
2.0
17
88
5
52
20
0
14
65
1.26
94204098--94204160
14
4.4
14
80
4
63
25
1
23
49
1.59
94204098--94204144
7
6.7
7
82
0
58
23
0
27
48
1.51
94204479--94204531
20
2.6
21
78
3
72
11
1
33
52
1.48
94204886--94204979
21
4.5
21
65
24
56
46
1
2
50
1.20
94204888--94204990
32
3.3
32
67
20
92
47
0
1
49
1.19
94204874--94205290
60
7.1
59
72
19
216
47
2
2
48
1.27
94205047--94205091
21
2.1
21
84
8
56
44
0
2
53
1.13
94205109--94205151
21
2.0
21
86
8
61
48
4
2
44
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94205003--94205143
59
2.3
60
83
4
178
46
2
2
48
1.28
94205154--94205239
20
4.3
20
67
15
70
44
2
3
50
1.32
94204881--94205360
147
3.3
147
92
1
820
47
2
2
47
1.27
94205193--94205237
21
2.1
21
88
8
65
42
2
4
51
1.34
94206556--94206613
17
3.6
16
86
6
82
43
46
0
10
1.38
94207689--94207750
23
2.9
21
74
9
61
40
1
0
58
1.08
94207937--94207964
11
2.5
11
100
0
56
35
7
0
57
1.26
94207797--94208359
187
3.0
187
93
2
981
28
7
4
59
1.44
94207797--94208359
186
3.0
185
93
3
961
28
7
4
59
1.44
94208382--94208407
13
2.0
13
100
0
52
38
0
0
61
0.96
94211744--94211903
39
4.1
39
96
0
275
22
30
25
21
1.99
94212927--94212983
9
6.7
9
76
11
66
28
0
10
61
1.29
94212926--94212974
16
3.0
16
90
3
80
30
0
10
59
1.31
94216026--94216053
5
5.6
5
100
0
56
21
0
0
78
0.75
94216032--94216317
103
2.9
98
84
10
391
35
6
3
54
1.43
94216584--94216637
9
6.0
9
75
0
54
48
14
1
35
1.55
94216584--94216637
18
3.0
18
77
0
63
48
14
1
35
1.55
94221713--94221741
14
2.1
14
93
6
51
34
0
10
55
1.34
94221711--94221750
15
2.8
15
85
11
57
32
0
15
52
1.43
94225122--94225175
21
2.6
21
90
0
90
29
20
50
0
1.49
94225412--94225492
31
2.5
33
84
8
112
11
6
22
60
1.52
94230575--94230691
51
2.3
51
92
0
189
35
16
23
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94235170--94235277
51
2.1
51
92
0
180
31
17
25
25
1.97
94238338--94238448
42
2.6
43
80
4
127
31
25
16
27
1.96
94242314--94242347
17
2.0
17
94
0
59
32
5
11
50
1.63
94243724--94243865
66
2.1
65
80
12
148
23
30
24
21
1.99
94247119--94247182
31
2.1
31
87
0
92
25
21
14
39
1.91
94247376--94247472
25
4.0
24
81
9
117
29
21
19
28
1.98
94247521--94247587
20
3.3
20
89
0
107
32
20
13
32
1.92
94256565--94256591
6
4.5
6
100
0
54
48
14
18
18
1.82
94257466--94257514
19
2.5
19
78
15
55
8
14
0
77
0.98
94258224--94258282
29
2.1
29
87
3
84
33
23
16
25
1.96
94260707--94260769
31
2.0
32
96
3
119
50
6
20
22
1.70
94264749--94264787
20
1.9
20
84
5
51
46
7
15
30
1.74
94278492--94278550
23
2.6
23
81
10
75
45
3
11
38
1.58
94279095--94279153
24
2.5
24
78
10
66
57
0
6
35
1.25
94279168--94279201
3
11.0
3
87
6
50
64
2
2
29
1.22
94279267--94279404
3
45.0
3
75
11
120
59
2
5
32
1.33
94279267--94279454
21
9.3
19
70
20
80
60
3
4
31
1.33
94279428--94279460
16
2.1
16
88
5
50
66
0
0
33
0.92
94282574--94282652
36
2.2
35
82
6
88
34
26
8
30
1.87
94293501--94293706
38
4.9
38
75
18
169
30
25
15
29
1.96
94293541--94293679
48
2.9
48
90
1
217
30
23
15
30
1.95
94295593--94295617
13
1.9
13
100
0
50
48
0
8
44
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94297256--94297373
54
2.2
54
96
0
218
25
15
27
32
1.95
94297511--94297557
22
2.1
22
92
0
76
12
10
27
48
1.74
94303301--94303433
49
2.7
49
90
0
194
30
21
15
32
1.94
94303583--94303743
44
3.6
44
73
6
137
19
22
21
36
1.95
94303580--94303783
44
4.7
43
70
10
117
20
22
21
36
1.95
94303580--94304135
89
6.4
87
75
10
397
20
20
21
37
1.94
94303666--94303794
43
3.0
44
70
5
118
19
18
22
39
1.92
94303796--94303959
86
1.9
85
83
7
215
21
20
20
37
1.94
94303977--94304149
45
3.9
45
68
14
135
19
19
20
39
1.92
94303577--94304215
89
7.3
88
75
9
393
20
20
20
37
1.94
94303567--94304215
349
1.9
349
94
0
1145
20
20
20
37
1.94
94316823--94316876
3
18.0
3
100
0
108
66
0
0
33
0.92
94326570--94327024
47
9.7
47
96
2
826
31
8
29
30
1.87
94327142--94327219
36
2.1
37
90
2
122
24
19
30
25
1.98
94329106--94329205
43
2.4
43
95
5
179
23
15
35
27
1.94
94329187--94329260
29
2.6
29
89
4
105
25
16
32
25
1.96
94329649--94329835
79
2.4
76
84
2
239
24
22
27
25
2.00
94329570--94329825
40
6.5
40
80
8
260
24
23
28
24
2.00
94332304--94333027
77
9.4
76
75
16
464
32
15
20
31
1.94
94334944--94335027
31
2.7
31
85
5
116
33
20
3
42
1.69
94341864--94341893
15
2.0
15
100
0
60
20
33
0
46
1.51
94344748--94344792
22
2.0
22
91
0
72
33
2
15
48
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94348916--94348960
22
2.0
22
91
0
72
33
2
15
48
1.57
94363121--94363172
20
2.6
20
81
6
61
53
1
3
40
1.30
94363139--94363211
19
3.8
19
74
18
55
60
1
4
34
1.24
94363394--94363490
9
10.1
9
70
17
63
32
4
2
60
1.27
94365198--94365346
63
2.4
63
82
0
172
27
20
26
25
1.99
94367060--94367084
13
1.9
13
100
0
50
40
8
20
32
1.81
94370328--94370408
22
3.6
21
73
15
56
9
9
2
77
1.07
94370356--94370408
22
2.4
22
81
6
63
9
15
1
73
1.17
94377971--94378004
17
2.0
17
100
0
68
35
11
11
41
1.78
94386101--94386147
25
2.0
25
83
8
62
27
14
4
53
1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343