Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  143  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47457302--47457336
15
2.3
15
100
0
70
25
17
37
20
1.94
47457309--47457342
15
2.3
15
89
0
50
20
26
38
14
1.91
47463716--47463827
27
4.1
27
78
7
111
16
23
21
38
1.93
47463716--47463836
54
2.2
54
80
2
136
17
24
21
36
1.94
47465324--47465366
19
2.4
18
85
11
61
44
13
4
37
1.65
47465325--47465376
18
2.8
19
83
11
56
48
13
3
34
1.61
47469749--47469842
42
2.2
43
84
5
120
27
14
25
31
1.95
47474081--47474144
32
2.0
33
84
9
87
28
28
20
23
1.99
47476142--47476176
3
11.7
3
87
0
52
62
0
2
34
1.10
47478128--47478191
33
2.0
33
84
9
87
28
28
20
23
1.99
47502787--47502983
50
3.9
50
83
1
243
27
25
19
26
1.99
47502800--47502983
101
1.8
99
87
2
269
28
25
19
26
1.99
47510948--47510994
22
2.1
22
88
7
69
21
0
29
48
1.50
47512930--47513112
46
4.0
46
91
0
267
25
31
8
34
1.86
47513083--47513417
47
7.1
47
92
0
492
27
29
9
33
1.89
47513129--47513345
22
9.3
21
63
26
66
26
29
11
33
1.91
47523959--47524125
70
2.4
70
89
4
257
29
14
26
29
1.96
47529178--47529348
93
1.8
93
89
2
272
28
29
20
22
1.98
47529170--47529345
46
3.8
46
75
14
182
28
28
19
22
1.98
47531737--47531798
15
4.2
15
78
12
74
58
14
16
11
1.64
47531727--47531791
29
2.3
28
89
2
94
60
13
16
9
1.59
47534690--47534863
46
3.8
45
79
8
190
28
29
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47534698--47534868
92
1.8
93
92
1
290
27
29
21
21
1.98
47538232--47538275
21
2.0
22
86
4
63
31
22
22
22
1.98
47538234--47538292
22
2.8
21
82
5
64
33
25
23
16
1.96
47538442--47538561
41
2.9
41
86
0
168
28
28
20
22
1.99
47538797--47539190
27
14.7
27
80
5
309
30
9
20
39
1.84
47538797--47539190
53
7.4
54
75
9
304
30
9
20
39
1.84
47539182--47539279
27
3.7
26
81
10
112
27
23
17
31
1.97
47542478--47542654
44
3.8
49
77
16
189
29
29
20
20
1.98
47542485--47542654
93
1.8
91
93
5
297
28
29
20
21
1.98
47542481--47542670
46
4.2
46
74
16
164
29
28
20
22
1.98
47550044--47550215
93
1.8
93
91
2
283
29
27
20
22
1.99
47550038--47550212
46
3.8
45
77
14
178
30
26
20
22
1.98
47560011--47560096
40
2.2
40
89
6
131
23
23
27
25
2.00
47563648--47563808
70
2.3
70
83
2
198
30
16
24
28
1.97
47572730--47572994
46
5.7
47
78
10
260
26
20
31
21
1.98
47572730--47572994
140
1.9
139
82
7
331
26
20
31
21
1.98
47576585--47576758
46
3.8
45
76
11
174
29
28
19
22
1.98
47576593--47576763
92
1.8
93
88
3
265
28
29
19
22
1.98
47579149--47579237
30
3.0
30
80
8
101
57
15
16
10
1.65
47579149--47579228
15
5.4
15
80
7
92
58
13
17
10
1.62
47579160--47579237
15
5.2
15
78
9
79
56
15
16
11
1.67
47590747--47590785
14
3.0
13
82
10
53
0
20
2
76
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47594740--47594904
87
1.9
87
87
5
244
37
23
14
24
1.92
47599867--47599922
27
2.1
26
83
3
67
33
21
25
19
1.97
47600659--47600772
54
2.1
54
82
9
135
27
16
22
33
1.96
47600675--47600782
54
2.0
53
91
5
173
25
17
20
37
1.94
47600671--47600789
27
4.4
27
80
2
132
25
17
20
36
1.94
47601751--47601814
31
2.1
31
90
0
101
25
23
15
35
1.94
47602007--47602199
24
8.0
24
90
7
277
27
20
20
30
1.98
47602256--47602321
9
6.9
9
77
13
69
36
22
6
34
1.79
47602252--47602312
20
3.0
20
92
0
104
32
21
9
36
1.86
47602256--47602321
5
13.6
5
74
17
59
36
22
6
34
1.79
47602360--47602407
25
1.9
25
91
0
78
25
14
25
35
1.94
47625089--47625309
40
5.6
40
81
6
254
24
26
23
25
2.00
47628494--47628668
40
4.4
39
85
5
203
23
22
29
24
1.99
47637781--47638001
40
5.6
39
80
8
225
25
25
23
24
2.00
47637781--47638001
80
2.8
79
85
7
263
25
25
23
24
2.00
47640634--47640711
23
3.6
21
74
19
72
65
0
32
2
1.06
47641601--47641694
42
2.2
42
83
3
109
14
30
27
26
1.95
47644462--47644505
22
2.0
22
100
0
88
27
18
13
40
1.88
47646539--47646567
13
2.2
13
100
0
58
37
27
20
13
1.91
47649499--47649550
26
2.0
26
100
0
104
42
0
23
34
1.54
47654138--47654189
14
3.8
13
76
14
52
1
19
0
78
0.84
47667884--47667940
28
2.0
28
86
0
78
22
15
35
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47668267--47668490
27
8.3
27
81
6
258
39
17
10
32
1.84
47668455--47668533
27
2.9
27
86
0
95
37
17
16
27
1.91
47675566--47675600
16
2.2
16
94
0
61
57
22
14
5
1.59
47679324--47679531
41
5.1
40
74
9
136
33
15
28
22
1.94
47679501--47679565
34
1.9
34
93
0
112
35
15
27
21
1.94
47679535--47679626
41
2.2
41
88
3
114
32
13
29
25
1.93
47684178--47684522
176
2.0
176
98
0
672
31
18
24
26
1.98
47685672--47685843
49
3.5
49
77
5
161
22
27
21
27
1.99
47685670--47685850
98
1.9
97
84
3
247
22
28
20
28
1.99
47689840--47689881
22
2.0
21
90
4
66
30
0
7
61
1.22
47689845--47689895
22
2.3
23
80
10
61
27
0
9
62
1.26
47696252--47696293
20
2.1
20
100
0
84
40
19
4
35
1.72
47697513--47697738
47
4.9
46
82
11
209
28
27
20
23
1.99
47697567--47697689
47
2.6
47
100
0
246
28
27
20
23
1.99
47701864--47701920
9
5.9
9
73
15
51
35
8
21
35
1.84
47701862--47701932
20
3.5
20
94
0
124
35
11
21
32
1.89
47701873--47701927
11
5.4
11
70
16
55
36
12
20
30
1.90
47701977--47702143
24
7.0
24
85
9
218
28
22
21
26
1.99
47701977--47702143
47
3.5
47
85
9
216
28
22
21
26
1.99
47701977--47702143
71
2.3
70
89
7
248
28
22
21
26
1.99
47703797--47703846
22
2.3
22
86
6
66
26
0
8
66
1.19
47705618--47705896
49
5.6
49
74
7
220
31
25
16
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47705612--47705896
150
1.9
149
84
5
387
31
25
16
25
1.97
47706625--47706663
16
2.4
17
86
4
53
51
28
5
15
1.64
47707934--47707986
16
3.3
16
83
0
61
52
16
18
11
1.73
47707926--47707992
16
4.2
16
82
0
53
53
20
14
10
1.70
47708206--47708271
28
2.3
28
84
7
89
27
13
27
31
1.94
47714299--47714330
16
2.0
16
100
0
64
18
25
6
50
1.70
47725652--47725925
49
5.5
49
77
7
219
29
27
18
23
1.98
47725649--47725927
101
2.8
101
80
3
296
30
26
18
24
1.98
47735167--47735437
47
5.8
45
76
11
210
23
30
17
28
1.97
47741715--47741740
11
2.4
11
100
0
52
53
19
0
26
1.45
47742131--47742219
27
3.3
27
88
3
117
29
15
15
39
1.89
47742171--47742538
27
13.7
27
79
6
354
32
8
19
39
1.82
47742844--47742917
28
2.6
28
89
2
103
27
35
16
21
1.94
47751635--47751796
47
3.5
47
74
17
176
22
17
29
30
1.97
47751579--47751843
92
2.9
93
91
3
428
21
18
30
29
1.97
47770651--47770718
3
22.7
3
78
0
64
29
10
0
60
1.30
47775701--47775733
15
2.2
16
89
10
52
54
21
0
24
1.45
47776119--47776187
22
3.1
22
91
0
111
46
18
20
14
1.84
47780767--47780882
60
1.9
60
81
6
137
30
22
21
25
1.99
47781002--47781054
22
2.4
22
87
0
70
28
24
32
15
1.95
47781304--47781360
27
2.1
27
93
0
96
28
19
21
31
1.97
47783125--47783240
60
1.9
60
81
6
137
30
22
21
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47783360--47783412
22
2.4
22
87
0
70
28
24
32
15
1.95
47783662--47783718
27
2.1
27
90
0
87
29
19
19
31
1.96
47785481--47785596
60
1.9
60
81
6
137
30
22
21
25
1.99
47785716--47785768
22
2.4
22
87
0
70
28
24
32
15
1.95
47786018--47786074
27
2.1
27
93
0
96
28
19
21
31
1.97
47787841--47787956
60
1.9
60
81
6
137
30
22
21
25
1.99
47788076--47788128
22
2.4
22
87
0
70
28
24
32
15
1.95
47788378--47788434
27
2.1
27
93
0
96
28
19
21
31
1.97
47790200--47790315
60
1.9
60
81
6
137
30
22
21
25
1.99
47790435--47790487
22
2.4
22
87
0
70
28
24
32
15
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343