genome.fa.s10.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  153  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50826006--50826186	79	2.3	78	79	12	208	26	19	27	26	1.99
50832705--50832750	25	1.9	23	86	8	65	73	0	19	6	1.04
50833339--50833426	37	2.4	37	100	0	176	29	14	22	32	1.94
50834023--50834205	79	2.3	81	84	7	232	24	22	27	25	2.00
50834024--50834207	40	4.6	40	83	9	216	23	22	28	25	2.00
50834076--50834240	79	2.1	79	84	6	210	25	21	27	25	1.99
50835607--50835634	12	2.3	12	100	0	56	28	21	39	10	1.87
50839457--50839495	21	1.9	20	85	15	53	20	25	35	17	1.95
50840597--50840714	40	2.9	40	94	1	200	33	24	16	24	1.96
50843672--50843849	27	6.6	27	83	3	205	26	15	28	29	1.96
50843673--50843828	82	1.9	81	88	3	233	26	15	28	29	1.96
50843669--50843849	82	2.2	81	83	2	229	27	15	27	29	1.96
50854084--50854261	27	6.6	27	83	3	205	26	15	28	29	1.96
50854085--50854240	82	1.9	81	88	3	233	26	15	28	29	1.96
50854081--50854261	82	2.2	81	83	2	229	27	15	27	29	1.96
50855847--50855890	23	1.9	24	90	9	74	54	0	20	25	1.45
50858991--50859029	10	3.8	10	93	6	69	33	17	17	30	1.94
50858990--50859029	21	1.9	21	100	0	80	35	17	17	30	1.93
50859074--50859143	25	2.8	25	91	0	104	27	24	22	25	2.00
50859099--50859170	25	3.0	24	78	13	67	29	20	22	27	1.99
50859357--50859415	31	1.9	30	82	6	73	32	18	20	28	1.96
50867097--50867293	50	4.0	49	85	1	250	25	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50869457--50869506	21	2.4	21	100	0	100	34	18	18	30	1.94
50869456--50869506	11	4.8	11	92	7	88	35	17	17	29	1.93
50869551--50869617	25	2.7	25	92	0	107	31	26	19	22	1.98
50869551--50869627	25	3.1	25	88	1	84	35	23	16	24	1.95
50870821--50870846	8	3.2	8	100	0	52	88	0	0	11	0.52
50888536--50888713	51	3.5	51	87	4	236	28	29	14	27	1.95
50890749--50890816	27	2.5	27	78	2	73	26	8	14	50	1.72
50892723--50892781	27	2.2	27	93	3	102	32	13	23	30	1.93
50894232--50894305	28	2.7	26	71	21	62	43	21	17	17	1.88
50902712--50902785	29	2.6	28	83	8	96	29	36	12	21	1.90
50906104--50906328	40	5.6	40	80	5	231	27	23	25	23	2.00
50906104--50906328	120	1.9	121	82	2	283	27	23	25	23	2.00
50906104--50906328	80	2.8	79	80	2	261	27	23	25	23	2.00
50911979--50912011	17	2.1	17	88	11	52	30	0	0	69	0.88
50912493--50912524	7	4.7	7	96	3	57	15	9	0	75	1.05
50913031--50913094	22	3.0	22	79	9	60	40	20	0	39	1.52
50914464--50914527	32	2.0	32	100	0	128	43	3	15	37	1.63
50920877--50920916	21	2.0	20	90	5	62	22	25	40	12	1.89
50922173--50922292	48	2.4	50	80	5	138	25	29	17	27	1.98
50922271--50922476	46	4.5	46	77	8	188	24	29	19	26	1.98
50922271--50922484	94	2.3	92	81	8	249	25	29	19	25	1.98
50931620--50931644	13	1.9	13	100	0	50	32	0	20	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50937600--50937679	27	3.0	27	86	0	115	27	15	16	41	1.88
50939029--50939253	48	4.7	48	90	0	333	28	17	31	23	1.97
50939063--50939187	25	5.2	24	61	21	55	29	16	29	24	1.96
50939031--50939299	96	2.8	95	86	3	333	27	18	30	23	1.98
50939029--50939300	48	5.7	46	88	5	267	27	18	30	23	1.97
50939029--50939300	144	1.9	144	83	3	350	27	18	30	23	1.97
50944823--50945007	40	4.7	40	82	6	216	25	27	23	24	2.00
50944823--50945007	79	2.3	81	80	8	209	25	27	23	24	2.00
50952898--50953081	40	4.6	40	80	10	207	25	28	22	23	1.99
50952898--50953082	79	2.3	81	81	8	218	25	28	22	23	1.99
50962797--50962844	21	2.3	21	92	0	78	25	18	54	2	1.55
50963138--50963460	43	7.5	43	82	4	355	26	19	21	32	1.97
50966300--50966420	43	2.9	42	78	11	147	28	17	24	28	1.97
50968494--50968693	27	7.4	27	84	0	256	35	18	21	25	1.95
50969337--50969388	27	2.0	26	84	3	68	17	26	21	34	1.95
50969318--50969475	71	2.3	68	85	4	210	17	28	22	31	1.97
50973743--50973785	17	2.5	17	81	7	52	48	11	13	25	1.77
50973895--50973933	18	2.2	18	86	9	53	61	0	7	30	1.24
50989986--50990145	43	3.8	42	76	16	132	34	25	16	23	1.96
50989987--50990143	85	1.8	85	82	5	201	33	24	17	24	1.96
50993162--50993265	27	3.8	28	83	7	126	33	20	24	22	1.97
50998885--50998987	25	4.1	25	79	9	102	32	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51001969--51002028	27	2.3	26	85	2	75	35	20	23	21	1.96
51001990--51002053	33	2.0	32	87	3	92	34	20	25	20	1.96
51017447--51017805	181	2.0	180	96	1	666	25	13	21	39	1.90
51020165--51020224	27	2.2	28	85	8	79	25	26	11	36	1.90
51022092--51022220	39	3.3	39	87	0	177	25	25	17	31	1.97
51025614--51025668	23	2.5	22	82	14	60	74	1	18	5	1.10
51025623--51025668	25	1.9	23	86	8	65	76	2	17	4	1.06
51026260--51026347	37	2.4	37	100	0	176	29	14	22	32	1.94
51029401--51029488	37	2.4	37	100	0	176	29	14	22	32	1.94
51031894--51031948	23	2.5	22	82	14	60	74	1	18	5	1.10
51031903--51031948	25	1.9	23	86	8	65	76	2	17	4	1.06
51032543--51032632	37	2.4	37	98	0	171	30	13	22	34	1.92
51033229--51033413	40	4.7	40	80	7	191	25	22	27	25	2.00
51033282--51033436	79	2.0	79	84	7	208	26	21	26	25	1.99
51036336--51036423	6	14.3	6	72	13	72	50	14	15	19	1.79
51036336--51036423	19	4.8	18	72	13	72	50	14	15	19	1.79
51036344--51036423	37	2.2	36	82	8	90	50	13	16	20	1.78
51036345--51036423	31	2.5	31	83	0	104	50	13	16	18	1.78
51036839--51037149	27	11.5	27	84	1	390	26	18	18	36	1.94
51037137--51037162	13	2.0	13	100	0	52	30	30	0	38	1.58
51037112--51037189	40	2.0	40	94	0	138	25	24	14	35	1.93
51037150--51037208	27	2.2	27	93	0	100	25	18	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51037193--51037513	27	11.9	27	84	0	399	31	9	19	39	1.83
51037190--51037507	54	5.9	54	89	0	474	31	9	19	39	1.83
51042245--51042333	39	2.3	39	86	0	124	23	29	16	30	1.97
51045794--51045831	17	2.2	18	85	4	51	28	0	26	44	1.54
51047288--51047326	18	2.2	18	90	0	60	74	2	12	10	1.17
51049636--51049713	40	2.0	40	89	0	120	23	17	28	30	1.97
51054762--51054864	42	2.4	43	79	6	111	29	21	18	31	1.97
51075074--51075164	26	3.5	26	76	11	87	18	19	24	37	1.94
51076597--51076727	40	3.3	40	86	0	172	33	23	17	25	1.96
51079633--51079852	79	2.8	79	80	6	205	26	27	20	24	1.99
51079670--51079852	40	4.6	40	80	8	187	27	27	20	24	1.99
51087506--51087668	40	4.1	39	79	9	100	25	28	22	24	1.99
51087565--51087747	40	4.6	39	81	8	192	27	27	20	24	1.99
51087568--51087747	79	2.3	80	83	8	217	27	27	21	23	1.99
51099664--51099716	24	2.2	24	82	0	70	71	0	11	16	1.13
51102787--51103046	86	3.0	86	99	0	511	34	6	21	37	1.80
51103420--51103541	47	2.6	47	97	0	226	35	14	25	24	1.94
51103522--51103727	53	3.8	54	80	4	227	34	17	24	23	1.96
51104191--51104272	41	2.0	41	95	0	146	30	23	26	19	1.98
51114067--51114333	40	6.7	40	95	0	480	29	20	28	21	1.98
51122879--51123147	40	6.7	40	94	1	466	29	20	28	21	1.98
51128260--51128341	26	3.1	26	78	7	85	26	17	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51128263--51128418	54	2.9	53	73	8	154	27	11	16	44	1.81
51128263--51128420	27	5.9	26	77	10	113	27	12	15	44	1.83
51128361--51128427	27	2.6	27	88	4	93	25	14	13	46	1.82
51141790--51141818	10	2.9	10	100	0	58	20	0	0	79	0.74
51143052--51143145	40	2.3	40	82	12	113	34	15	22	27	1.95
51145562--51145778	45	4.8	45	94	1	355	25	26	23	23	2.00
51153313--51153352	7	5.7	7	87	0	62	32	0	50	17	1.47
51154971--51155028	29	2.0	29	100	0	116	44	20	10	24	1.82
51157401--51157529	46	2.8	46	95	0	222	29	29	21	19	1.98
51157409--51157548	46	3.0	45	88	4	140	28	29	21	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343