genome.fa.s10.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  135  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45342251--45342380	54	2.4	53	84	7	156	37	18	11	32	1.87
45342225--45342380	81	1.9	80	81	11	185	37	17	12	32	1.87
45342306--45342394	27	3.3	27	78	12	94	39	15	13	31	1.86
45344334--45344373	15	2.4	17	88	12	57	5	17	2	75	1.10
45358255--45358426	93	1.8	93	96	0	317	27	29	21	20	1.98
45358248--45358423	46	3.8	46	79	12	216	28	29	21	20	1.98
45373948--45374075	45	2.8	46	92	3	206	29	29	19	21	1.97
45378226--45378416	78	2.4	80	83	6	255	37	8	23	30	1.85
45378226--45378416	27	7.2	27	82	4	228	37	8	23	30	1.85
45378409--45378562	54	2.9	54	76	4	168	30	11	20	37	1.88
45378410--45378562	27	5.7	26	72	12	96	30	10	20	37	1.87
45383046--45383240	27	7.2	27	86	0	264	38	8	23	29	1.85
45383232--45383365	27	5.0	25	72	11	88	32	11	19	37	1.87
45383233--45383365	54	2.5	53	79	8	142	32	11	19	36	1.87
45388845--45389068	40	5.6	40	85	4	290	23	22	28	25	1.99
45390724--45391457	242	3.0	242	98	0	1425	34	23	14	27	1.94
45391542--45392018	81	5.9	81	80	6	418	33	8	17	40	1.80
45391538--45392039	27	18.7	27	76	7	247	32	8	18	39	1.82
45392356--45392419	28	2.3	28	88	0	92	28	34	15	21	1.94
45393659--45393792	56	2.4	56	82	2	153	30	14	21	32	1.94
45405449--45405829	94	4.1	94	93	1	595	33	12	28	25	1.92
45405450--45405789	47	7.2	47	95	0	599	33	12	28	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45405817--45405985	46	3.7	46	96	0	311	34	8	31	24	1.86
45407917--45408122	27	7.6	27	87	2	288	24	13	18	43	1.86
45407909--45408124	81	2.7	81	88	2	326	25	12	18	43	1.85
45408432--45408480	18	2.7	18	81	6	64	22	20	14	42	1.88
45411863--45411923	30	2.0	30	100	0	122	37	16	9	36	1.82
45414823--45414951	46	2.8	48	81	8	142	20	18	29	31	1.97
45421733--45421765	11	3.0	11	100	0	66	54	18	0	27	1.44
45422241--45422314	27	2.7	27	89	4	105	33	12	13	40	1.82
45422295--45422720	27	15.9	26	78	9	348	33	8	19	38	1.82
45422268--45422720	81	5.6	79	80	6	450	33	8	18	38	1.82
45423391--45423493	6	16.8	6	75	15	77	49	11	18	20	1.78
45423403--45423493	37	2.5	37	85	3	121	48	12	18	20	1.80
45423612--45423671	27	2.3	26	85	2	75	35	20	23	21	1.96
45423710--45423762	27	2.0	26	85	3	70	35	20	26	16	1.94
45423968--45424140	81	2.1	81	88	0	247	43	8	19	29	1.79
45423996--45424177	27	6.7	27	87	0	247	41	5	19	32	1.75
45424169--45424337	54	3.2	53	78	5	187	28	8	21	40	1.82
45424170--45424337	27	6.3	26	75	10	133	28	8	22	41	1.82
45428259--45428648	188	2.1	188	83	3	498	34	7	17	40	1.79
45428222--45428669	27	16.7	27	80	4	386	33	8	18	40	1.80
45428253--45428669	161	2.6	162	81	4	459	33	8	17	40	1.79
45431901--45432070	46	3.7	46	78	7	184	30	30	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45431909--45432080	93	1.8	93	90	2	274	29	29	19	22	1.98
45438055--45438536	27	18.0	27	77	4	384	32	8	19	40	1.81
45438874--45438937	28	2.3	28	86	5	85	29	34	14	21	1.93
45440992--45441123	56	2.4	56	84	2	169	29	15	21	33	1.94
45444755--45444783	14	2.1	14	100	0	58	27	6	24	41	1.80
45449679--45449715	12	3.1	12	84	0	56	48	13	8	29	1.71
45457380--45457417	19	2.0	20	85	15	53	39	23	0	36	1.55
45457646--45457767	46	2.7	46	93	0	199	29	27	21	21	1.98
45457644--45457786	46	3.1	45	84	6	137	29	27	20	21	1.98
45463735--45463830	27	3.5	28	91	2	142	32	29	13	25	1.94
45471746--45471844	27	3.5	28	86	2	110	31	28	13	27	1.94
45477304--45477528	40	5.6	40	81	5	240	26	24	25	23	2.00
45477304--45477564	80	3.3	80	81	3	285	26	24	25	23	2.00
45477304--45477528	120	1.9	121	85	4	312	26	24	25	23	2.00
45485721--45485825	42	2.5	43	87	4	142	33	15	21	29	1.94
45485777--45485913	57	2.4	56	81	4	150	29	13	21	35	1.92
45494257--45494378	45	2.7	45	93	2	201	27	27	22	23	1.99
45495192--45495287	47	2.0	47	92	4	158	44	12	12	30	1.79
45501741--45501899	45	3.6	45	84	3	198	28	27	20	24	1.99
45502705--45502796	47	2.0	47	89	4	141	43	11	14	30	1.81
45515216--45515383	93	1.8	91	91	5	275	29	29	19	22	1.98
45515215--45515377	46	3.6	45	76	19	167	29	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45522106--45522131	12	2.2	12	100	0	52	42	0	30	26	1.56
45536048--45536087	12	3.1	14	75	17	50	72	5	7	15	1.24
45536057--45536098	11	3.8	11	87	6	59	76	2	4	16	1.07
45536057--45536102	21	2.1	21	92	8	74	73	4	6	15	1.19
45543556--45543615	29	2.1	29	90	0	93	41	28	0	30	1.56
45543562--45543609	15	3.3	15	73	5	53	43	25	0	31	1.55
45545765--45545820	30	1.9	28	85	7	76	12	30	3	53	1.55
45547420--45547453	4	9.0	4	93	6	54	79	0	0	20	0.73
45548793--45548844	23	2.3	22	75	21	54	9	23	1	65	1.32
45548802--45548856	12	4.6	12	73	15	51	12	23	0	63	1.29
45548838--45548875	17	2.2	18	85	4	51	10	23	2	63	1.39
45551621--45551655	19	1.9	19	88	11	56	14	5	11	68	1.37
45551660--45551694	9	3.9	9	100	0	70	0	11	8	80	0.92
45559781--45559817	19	1.9	19	94	0	65	56	13	8	21	1.63
45559961--45560002	20	2.0	21	90	4	68	40	14	23	21	1.90
45562763--45562805	11	3.6	11	80	17	50	76	4	6	11	1.13
45562763--45562805	12	3.5	12	84	6	59	76	4	6	11	1.13
45564192--45564237	20	2.3	20	84	0	56	23	19	17	39	1.92
45564184--45564257	30	2.5	30	84	8	80	22	20	18	37	1.94
45565848--45565872	12	2.1	12	100	0	50	68	0	8	24	1.16
45565889--45565948	26	2.3	26	85	8	77	75	5	15	5	1.15
45566985--45567043	18	3.3	18	85	0	82	72	6	15	5	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45566981--45567073	6	15.3	6	70	5	62	72	4	18	5	1.21
45567076--45567138	33	1.9	33	84	12	85	55	6	25	12	1.60
45568922--45568967	20	2.3	20	84	0	56	23	19	17	39	1.92
45568915--45568987	30	2.5	30	86	6	96	21	20	19	38	1.94
45572152--45572198	20	2.3	20	85	0	67	29	36	12	21	1.91
45573843--45573930	30	2.9	30	79	0	104	28	26	15	29	1.96
45574775--45574818	22	2.0	22	95	0	79	34	4	36	25	1.76
45578881--45578925	19	2.3	20	84	7	65	6	11	2	80	0.99
45581389--45581432	22	2.0	22	95	0	79	34	4	36	25	1.76
45589878--45590055	27	6.6	27	74	6	119	28	16	26	29	1.97
45589875--45590055	82	2.2	81	81	4	204	28	16	25	29	1.97
45596414--45596471	20	3.1	18	72	7	53	65	0	1	32	1.03
45596707--45596796	24	3.5	24	70	20	67	57	2	0	40	1.11
45596738--45596779	18	2.4	18	88	4	59	54	4	0	40	1.21
45596738--45596788	18	2.9	19	80	13	56	56	3	0	39	1.18
45597008--45597061	12	4.6	12	74	19	51	70	1	0	27	0.98
45596972--45597061	22	4.2	22	72	17	57	71	1	1	26	1.00
45597174--45597228	27	2.0	28	86	10	78	50	0	0	49	1.00
45597371--45597420	20	2.5	20	81	12	50	68	4	0	28	1.08
45597599--45597658	27	2.3	26	80	8	68	53	5	3	38	1.39
45597654--45597709	22	2.5	22	82	8	69	44	0	0	55	0.99
45597754--45597913	12	14.2	11	66	25	59	62	3	0	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45597855--45597920	33	2.0	33	85	5	89	69	3	0	27	1.03
45598549--45598625	20	3.6	20	74	16	73	74	5	9	11	1.22
45599524--45599594	37	1.9	37	86	11	101	76	1	18	4	1.03
45599534--45599583	6	8.2	6	83	14	50	76	2	20	2	0.99
45599644--45599674	12	2.6	12	94	0	53	45	12	12	29	1.80
45599670--45599704	12	2.8	13	87	12	56	77	0	17	5	0.96
45599677--45599708	12	2.8	12	95	4	57	78	0	15	6	0.95
45601827--45601923	30	3.2	30	73	2	97	26	26	17	28	1.98
45603693--45603901	77	2.7	77	88	0	310	32	28	18	21	1.97
45604281--45604316	18	1.9	18	88	5	54	27	19	8	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343