genome.fa.s10.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  129  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43477562--43477971	27	15.2	27	81	3	441	42	6	20	30	1.78
43477562--43477971	81	5.1	81	87	0	536	42	6	20	30	1.78
43477923--43478144	27	8.2	27	86	5	218	31	9	20	38	1.84
43477571--43478069	81	6.2	80	83	3	341	39	7	20	32	1.80
43477896--43478144	54	4.6	54	80	5	216	32	8	21	37	1.83
43477960--43478196	81	2.9	82	77	7	227	30	12	20	36	1.90
43478139--43478205	27	2.5	27	90	2	100	28	23	16	31	1.96
43478126--43478205	26	3.0	27	85	3	108	27	21	18	32	1.97
43480275--43480326	27	1.9	27	84	0	68	32	21	23	23	1.98
43480662--43481065	27	15.1	27	79	3	368	41	7	21	29	1.79
43480662--43481065	54	7.5	54	83	3	406	41	7	21	29	1.79
43480662--43481065	80	5.0	78	82	6	364	41	7	21	29	1.79
43481045--43481214	27	6.3	27	77	7	103	31	9	21	37	1.85
43480662--43481065	134	3.0	134	89	2	571	41	7	21	29	1.79
43481196--43481278	27	3.1	27	82	0	94	27	21	18	32	1.96
43490987--43491170	67	2.8	64	77	10	196	28	17	30	22	1.97
43491272--43491320	23	2.1	23	100	0	98	32	8	26	32	1.86
43497573--43498084	129	4.0	127	84	6	613	25	17	26	30	1.97
43497573--43498084	43	11.9	43	81	6	549	25	17	26	30	1.97
43501885--43501976	27	3.4	27	90	0	148	28	27	7	36	1.84
43501860--43502069	54	3.9	52	77	8	161	34	23	10	32	1.88
43501939--43502105	54	3.1	54	80	7	171	38	22	8	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43501975--43502105	54	2.4	55	87	2	176	40	20	9	29	1.85
43501980--43502163	54	3.4	55	81	6	169	40	19	9	30	1.83
43501980--43502167	27	6.9	27	75	9	121	39	19	9	31	1.83
43503069--43503151	25	3.4	25	88	1	105	32	22	20	24	1.98
43505429--43505673	49	4.9	49	81	4	294	29	26	17	26	1.98
43508364--43508402	15	2.5	15	91	4	60	56	15	12	15	1.68
43513121--43513217	48	2.0	48	93	0	167	31	6	29	31	1.82
43515115--43515333	43	5.1	43	93	0	366	12	23	32	31	1.91
43515512--43515594	28	2.9	28	75	7	87	25	20	27	26	1.99
43518982--43519089	48	2.2	50	88	3	157	36	4	25	34	1.77
43520591--43520829	49	4.8	48	82	6	271	29	26	17	25	1.98
43528081--43528124	22	2.0	22	82	8	54	38	13	18	29	1.89
43528351--43528572	40	5.6	40	87	3	306	27	25	22	23	2.00
43535613--43535656	22	2.0	22	82	8	54	40	13	15	29	1.86
43535883--43536104	40	5.6	40	89	3	317	28	26	21	23	1.99
43537598--43538121	261	2.0	261	95	0	949	39	8	21	30	1.83
43538301--43538432	45	3.0	45	89	3	196	22	19	27	30	1.98
43540998--43541198	27	7.4	27	86	3	251	30	27	14	27	1.95
43545147--43545347	27	7.4	27	86	3	251	30	27	14	27	1.95
43549839--43549888	19	2.6	19	90	0	82	44	8	22	26	1.80
43549808--43549863	25	2.2	25	90	0	85	41	14	26	17	1.88
43549808--43549922	25	4.6	25	71	12	83	43	13	22	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43550428--43550859	81	5.4	81	85	1	496	41	7	19	31	1.80
43550453--43550832	27	14.1	27	84	1	458	42	7	19	30	1.79
43550784--43551005	27	8.2	27	81	4	169	31	10	20	37	1.86
43550994--43551070	27	2.9	27	88	0	109	27	23	18	31	1.97
43553419--43553591	46	3.7	46	79	10	208	21	20	27	29	1.98
43553416--43553586	93	1.8	93	93	0	297	21	21	28	28	1.98
43560997--43561169	46	3.7	46	79	10	208	21	20	27	29	1.98
43560994--43561164	93	1.8	93	93	0	297	21	21	28	28	1.98
43561394--43561431	19	2.0	20	85	15	53	36	0	23	39	1.55
43570236--43570382	40	3.7	40	92	0	240	31	28	20	19	1.97
43577946--43578168	40	5.6	40	93	0	383	32	29	19	18	1.96
43581838--43581970	53	2.5	54	81	2	162	27	15	33	24	1.95
43584037--43584072	18	2.0	18	88	0	54	30	8	33	27	1.86
43588395--43588906	43	11.9	43	79	6	520	26	18	25	29	1.98
43592670--43592758	27	3.3	27	88	0	142	26	23	8	40	1.84
43592642--43592772	54	2.4	53	79	8	165	32	21	9	36	1.86
43592791--43593026	27	8.7	27	77	7	192	39	20	8	31	1.83
43592757--43592913	54	2.9	55	83	6	169	40	20	10	29	1.85
43592748--43592914	81	2.1	80	81	7	194	38	22	10	28	1.86
43592791--43592940	81	1.9	81	87	5	223	42	21	8	28	1.81
43595985--43596063	37	2.1	37	88	4	115	25	30	18	25	1.98
43596182--43596893	47	15.1	47	94	1	1232	29	30	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43600122--43600302	40	4.5	39	91	4	249	24	27	22	26	2.00
43600126--43600384	40	6.5	40	83	6	142	24	27	22	26	2.00
43600109--43600384	80	3.5	79	81	6	283	24	27	21	26	1.99
43600123--43600384	120	2.2	120	79	9	277	24	27	22	26	2.00
43600700--43600770	29	2.4	29	88	4	99	26	30	15	26	1.96
43600752--43600897	43	3.4	43	99	0	283	26	34	15	23	1.94
43602748--43602824	36	2.1	36	88	4	111	25	28	19	25	1.99
43602942--43603745	47	17.1	47	95	1	1416	29	30	8	31	1.88
43607724--43607968	49	4.9	49	79	3	274	29	26	17	26	1.98
43610717--43610755	15	2.5	15	91	4	60	56	15	12	15	1.68
43613462--43613706	49	4.9	49	83	3	310	28	26	18	25	1.98
43613475--43613706	100	2.3	98	85	2	311	29	27	18	25	1.98
43614354--43614413	30	2.0	30	87	6	86	28	26	8	36	1.85
43616946--43616991	20	2.3	20	96	0	83	34	15	19	30	1.93
43620056--43620579	261	2.0	261	98	0	1003	39	8	20	31	1.82
43620760--43620892	45	3.0	45	92	0	221	23	21	27	27	1.99
43626906--43627378	47	10.1	47	92	1	716	35	10	28	25	1.90
43627352--43627488	46	3.0	46	84	4	177	35	8	32	24	1.84
43629974--43630040	30	2.4	29	79	16	70	52	4	17	25	1.64
43630543--43630699	43	3.7	43	77	10	187	23	18	28	29	1.98
43634014--43634080	30	2.4	29	79	16	70	52	4	17	25	1.64
43634237--43634295	25	2.4	25	100	0	118	32	0	18	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43634243--43634289	15	3.5	15	67	27	50	31	0	19	48	1.49
43634596--43634764	43	4.0	43	78	10	195	23	17	27	31	1.97
43636443--43636666	46	4.8	46	75	5	227	25	19	25	29	1.98
43636489--43636657	93	1.8	93	88	0	257	25	18	25	30	1.98
43637976--43638390	81	5.1	82	86	3	509	33	23	17	25	1.96
43637975--43638390	122	3.4	122	85	4	527	33	23	17	25	1.96
43637975--43638390	41	10.2	41	82	4	502	33	23	17	25	1.96
43640067--43640146	37	2.1	40	84	13	107	3	30	0	66	1.09
43640927--43640956	8	3.8	8	90	0	51	53	20	26	0	1.46
43642628--43642667	21	1.9	21	84	0	53	55	22	0	22	1.44
43642825--43642901	40	2.0	39	84	5	102	29	2	24	42	1.68
43643985--43644062	40	2.0	40	86	0	111	34	14	24	26	1.93
43647463--43647794	47	7.1	47	91	1	522	32	10	29	27	1.90
43647532--43647606	22	3.3	22	69	10	60	33	9	30	26	1.88
43647463--43647840	94	4.0	94	89	2	411	33	10	29	26	1.90
43647463--43647840	141	2.7	141	87	2	456	33	10	29	26	1.90
43653463--43653638	46	3.8	46	78	12	207	20	20	29	29	1.98
43653460--43653631	93	1.8	93	94	0	308	20	20	29	28	1.98
43660347--43660425	40	2.0	39	97	2	149	37	17	16	27	1.91
43666253--43666295	22	2.0	22	85	0	59	67	2	9	20	1.30
43668544--43668729	40	4.7	40	88	5	243	26	27	21	24	1.99
43793557--43793582	13	2.0	13	100	0	52	15	38	30	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43800094--43800831	47	15.6	47	94	1	1251	33	8	29	29	1.87
43800094--43800831	331	2.2	331	95	0	1305	33	8	29	29	1.87
43800954--43801050	37	2.6	37	93	0	158	23	19	29	26	1.98
43802092--43802123	16	2.0	16	93	0	55	34	37	9	18	1.83
43803727--43803764	19	2.0	20	85	15	53	39	23	0	36	1.55
43803993--43804114	46	2.7	46	92	0	190	30	27	20	21	1.98
43806415--43806514	43	2.4	44	83	11	129	35	24	14	27	1.93
43808522--43808560	14	2.6	16	88	8	55	38	2	20	38	1.66
43808774--43808864	45	2.0	45	91	0	146	24	9	29	36	1.88
43808782--43808896	45	2.6	45	83	2	142	20	14	31	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343