Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  283  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93812244--93812279
15
2.4
15
100
0
72
52
27
5
13
1.63
93814021--93814052
5
6.6
5
92
7
57
81
0
0
18
0.70
93814022--93814052
9
3.3
9
95
4
53
80
0
0
19
0.71
93820547--93820600
23
2.4
23
84
6
67
57
7
3
31
1.44
93820550--93820620
3
23.3
3
71
8
54
60
5
2
30
1.34
93821081--93821118
18
2.1
18
85
9
51
52
0
47
0
1.00
93832160--93832223
32
2.0
32
96
0
119
29
3
26
40
1.71
93832828--93832866
10
3.8
10
86
6
51
51
0
5
43
1.24
93845494--93845519
9
2.9
9
100
0
52
46
23
11
19
1.82
93847344--93847554
89
2.4
89
92
4
338
30
22
21
25
1.99
93848462--93848501
12
3.4
12
79
6
55
7
10
10
72
1.28
93850481--93850523
22
1.9
23
85
4
61
48
16
2
32
1.58
93852022--93852072
21
2.6
19
81
9
66
41
3
3
50
1.39
93855042--93855068
12
2.2
12
100
0
54
29
0
18
51
1.46
93855220--93855258
13
3.0
13
76
0
51
25
0
12
61
1.31
93855204--93855282
26
2.9
27
86
5
115
21
6
12
59
1.55
93859848--93859908
21
2.9
21
82
4
79
55
1
1
40
1.19
93867423--93867447
4
6.2
4
100
0
50
0
0
24
76
0.80
93870314--93870517
102
2.0
102
95
0
363
37
13
14
34
1.86
93873593--93873649
28
2.0
28
100
0
114
35
7
17
40
1.77
93880979--93881071
46
2.0
46
100
0
186
19
15
15
50
1.78
93883016--93883101
43
2.0
43
82
13
106
23
17
30
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93884755--93884799
22
2.0
22
83
8
56
28
0
8
62
1.25
93889418--93889477
17
3.3
17
67
24
50
41
25
3
30
1.71
93897960--93898010
17
3.2
17
68
21
56
15
39
33
11
1.84
93897942--93898010
30
2.3
30
97
0
129
18
39
30
11
1.87
93898498--93898548
17
3.0
17
77
8
59
15
11
0
72
1.12
93898479--93898548
33
2.1
34
84
7
90
15
12
1
70
1.25
93898487--93898547
22
2.8
21
75
7
59
16
11
0
72
1.13
93901711--93901744
11
3.0
12
87
12
54
32
0
0
67
0.91
93901869--93901931
30
2.1
31
88
8
94
60
6
4
28
1.42
93901961--93902003
22
2.0
22
90
0
68
58
13
11
16
1.64
93901968--93902008
11
3.7
11
86
0
64
56
12
14
17
1.68
93906165--93906198
17
2.0
17
88
11
52
44
0
0
55
0.99
93906158--93906204
16
3.0
15
77
20
51
46
0
2
51
1.13
93911661--93911688
6
4.7
6
100
0
56
0
14
17
67
1.22
93919811--93919850
17
2.4
17
91
8
64
25
50
0
25
1.50
93922281--93922336
28
2.0
28
89
0
85
30
25
12
32
1.92
93922323--93922457
40
3.4
40
87
0
180
33
25
17
23
1.96
93923660--93923829
83
2.0
85
91
2
281
40
12
11
35
1.78
93924985--93925021
16
2.3
16
90
0
56
81
2
2
13
0.92
93925130--93925165
16
2.2
16
90
0
54
0
50
0
50
1.00
93925887--93925913
11
2.5
11
100
0
54
29
7
7
55
1.55
93927291--93927344
27
2.0
27
100
0
108
37
14
7
40
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93927895--93927928
8
4.4
8
88
3
52
61
0
0
38
0.96
93927892--93927932
13
3.0
13
89
7
55
58
0
0
41
0.98
93927894--93927967
33
2.2
33
81
9
80
56
1
5
36
1.31
93929625--93930243
44
14.4
44
85
6
766
30
27
13
28
1.94
93929646--93930228
301
1.9
301
94
0
1022
30
27
13
28
1.94
93941690--93941743
27
2.0
27
100
0
108
37
14
7
40
1.74
93942294--93942327
8
4.4
8
88
3
52
61
0
0
38
0.96
93942291--93942331
13
3.0
13
89
7
55
58
0
0
41
0.98
93942459--93942518
25
2.4
25
73
15
61
55
1
3
40
1.27
93944661--93944739
30
2.6
29
76
7
86
67
3
6
22
1.30
93944510--93945342
304
2.7
300
90
4
1294
59
7
6
26
1.50
93944510--93945340
153
5.5
149
88
5
1199
59
7
6
26
1.50
93951710--93951765
21
2.8
20
81
10
53
3
32
0
64
1.11
93953908--93953964
22
2.6
21
84
13
71
29
5
3
61
1.35
93954562--93954597
18
2.0
18
94
0
63
5
8
16
69
1.33
93955148--93955203
29
1.9
29
88
0
85
35
0
5
58
1.21
93956440--93956477
18
2.2
18
85
4
51
73
2
15
7
1.17
93956661--93956710
25
1.9
25
84
8
64
64
4
24
8
1.38
93957333--93957401
35
2.0
35
97
0
129
17
49
11
21
1.78
93958246--93958283
3
12.3
3
88
5
58
34
0
0
65
0.93
93958583--93958637
22
2.5
23
77
13
62
43
0
3
52
1.18
93958578--93958639
25
2.7
23
75
14
65
41
0
3
54
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93973144--93973228
31
2.7
31
83
7
109
32
20
3
43
1.68
93981634--93981663
11
2.8
11
95
5
53
16
10
0
73
1.09
93982917--93982961
22
2.0
22
91
0
72
33
2
15
48
1.57
93994641--93995359
74
9.6
74
88
3
937
32
15
20
31
1.94
93995552--93995650
44
2.2
45
80
3
103
38
15
15
31
1.88
93996840--93996877
3
12.3
3
88
5
58
34
0
0
65
0.93
93996976--93997005
3
10.0
3
100
0
60
33
0
0
66
0.92
93997182--93997236
22
2.5
23
77
13
62
43
0
3
52
1.18
94001183--94001226
23
1.9
23
85
0
61
54
4
0
40
1.21
94002602--94002645
23
2.0
22
82
13
54
65
2
0
31
1.05
94002618--94002661
23
2.0
23
86
4
63
65
0
0
34
0.93
94013711--94013735
7
3.6
7
100
0
50
28
28
28
16
1.97
94016790--94016876
3
29.0
3
75
13
72
42
26
0
31
1.56
94017945--94018015
8
8.1
8
75
18
54
59
2
1
36
1.21
94017943--94018039
37
2.6
37
85
10
121
55
2
1
41
1.18
94019337--94019451
39
2.9
39
98
0
221
38
25
5
31
1.78
94022137--94022166
6
5.0
6
95
0
51
16
3
16
63
1.44
94022187--94022220
18
1.9
17
88
5
50
26
5
11
55
1.58
94022359--94022809
62
7.2
62
93
1
589
25
13
13
47
1.79
94023093--94023137
15
3.0
15
93
0
81
15
6
40
37
1.74
94024774--94024951
43
4.2
43
89
2
256
27
8
20
43
1.80
94024774--94024951
83
2.1
85
88
4
263
27
8
20
43
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94025570--94025617
21
2.3
21
88
0
69
37
31
22
8
1.84
94026557--94026671
27
4.3
26
87
5
149
36
23
23
16
1.94
94026557--94026671
54
2.1
54
88
3
169
36
23
23
16
1.94
94028287--94028422
26
5.2
26
96
0
227
36
24
5
33
1.80
94029154--94029265
56
2.0
56
91
3
181
30
19
10
39
1.86
94029322--94029380
30
2.0
30
83
6
77
49
20
5
25
1.69
94029824--94029877
3
18.3
3
81
11
67
0
37
1
61
1.07
94038671--94038701
16
1.9
16
93
0
53
29
22
12
35
1.91
94044195--94044228
16
2.2
15
94
5
59
64
0
0
35
0.94
94044670--94044721
23
2.3
24
80
12
65
50
1
5
42
1.37
94045320--94045359
20
2.0
20
100
0
80
25
25
5
45
1.73
94054092--94054290
9
21.0
9
65
20
77
35
3
3
58
1.29
94054079--94054156
20
4.1
19
80
9
88
30
2
2
64
1.21
94054092--94054249
19
8.3
18
70
14
68
34
2
3
59
1.27
94054092--94054165
38
2.0
38
89
2
114
33
2
1
62
1.18
94054150--94054210
21
2.9
22
83
9
65
42
3
1
52
1.27
94054177--94054223
20
2.4
20
82
10
53
40
2
2
55
1.24
94057207--94057370
83
2.0
83
85
0
220
32
6
15
45
1.70
94057293--94057463
93
1.8
93
86
7
249
31
7
17
43
1.76
94059271--94059315
22
2.0
22
100
0
90
40
26
0
33
1.57
94070483--94070555
36
2.0
36
97
0
137
26
8
6
58
1.52
94071391--94071436
18
2.8
17
78
15
53
30
41
28
0
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94074640--94074726
21
4.0
23
72
15
85
39
25
20
14
1.91
94075098--94075155
15
3.8
15
86
2
80
53
12
0
34
1.38
94076426--94076457
5
6.4
5
92
0
55
59
0
3
37
1.13
94080382--94080411
16
1.9
16
93
6
53
63
3
0
33
1.11
94085772--94085812
5
8.2
5
100
0
82
60
0
0
39
0.96
94104868--94104919
24
2.1
25
85
3
70
67
3
0
28
1.08
94106303--94106346
10
4.4
10
83
11
54
65
6
0
27
1.17
94106275--94106317
19
2.2
20
84
12
54
60
2
2
34
1.22
94108617--94108697
42
1.9
42
94
0
144
46
16
14
22
1.83
94109658--94109717
19
2.8
22
78
19
72
26
10
16
46
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343