genome.fa.s10.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  168  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55624153--55624211	22	2.8	22	74	5	59	27	0	0	72	0.84
55639584--55639662	39	2.0	39	100	0	158	27	7	26	37	1.83
55643249--55643654	47	8.6	47	90	2	616	32	8	29	29	1.87
55643249--55643654	96	4.3	96	92	3	664	32	8	29	29	1.87
55643249--55643654	143	2.9	142	89	4	631	32	8	29	29	1.87
55648800--55648825	4	6.5	4	100	0	52	73	0	26	0	0.84
55650253--55650295	20	2.2	20	100	0	86	39	20	16	23	1.92
55652306--55652521	40	5.4	40	90	1	301	24	23	27	25	2.00
55662626--55662734	54	2.0	55	85	5	150	29	18	10	42	1.83
55665875--55665904	15	2.1	14	93	6	51	66	0	26	6	1.16
55675597--55675673	29	2.7	29	91	0	127	29	27	15	27	1.96
55677234--55677357	46	2.6	47	86	6	162	29	18	27	25	1.98
55682392--55682426	18	2.0	17	88	5	52	45	0	0	54	0.99
55682536--55682570	18	2.0	17	88	5	52	45	0	0	54	0.99
55682732--55682826	45	2.1	45	88	1	138	32	27	5	34	1.79
55682805--55682837	16	2.1	16	94	0	57	30	36	0	33	1.58
55682818--55682860	21	2.0	21	95	0	77	34	37	0	27	1.57
55684727--55684902	46	3.8	46	76	12	189	18	18	31	31	1.95
55684726--55684895	93	1.8	93	94	0	304	19	18	31	30	1.96
55690421--55690535	27	4.3	26	84	9	142	19	22	22	35	1.96
55697961--55698018	26	2.2	26	84	3	71	39	27	8	24	1.84
55698123--55698212	28	3.3	28	87	7	123	20	22	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55698129--55698232	27	3.8	26	83	9	111	20	23	20	36	1.95
55701733--55701765	12	2.6	13	85	4	50	33	0	9	57	1.30
55701837--55701904	29	2.3	29	84	0	82	38	11	27	22	1.89
55703645--55703764	63	1.9	63	89	3	188	33	26	17	22	1.96
55705072--55705270	29	6.9	29	76	6	154	35	13	24	26	1.92
55705072--55705168	28	3.4	28	81	5	106	34	9	25	30	1.88
55712055--55712150	44	2.2	42	81	7	113	27	16	27	29	1.97
55717190--55717331	40	3.6	40	89	2	207	27	23	27	21	1.99
55725404--55725446	15	2.7	15	89	7	59	32	4	0	62	1.15
55726648--55726716	23	3.0	23	93	0	111	14	2	39	43	1.60
55726675--55726772	29	3.6	28	76	9	80	16	1	34	47	1.53
55727370--55727436	11	6.5	11	78	13	72	44	1	0	53	1.09
55727370--55727436	20	3.3	20	85	8	82	44	1	0	53	1.09
55727376--55727453	30	2.6	30	91	4	122	43	3	0	52	1.19
55727370--55727447	9	7.8	10	76	15	72	44	2	0	52	1.14
55729468--55729524	30	2.0	30	86	6	82	47	0	22	29	1.52
55730325--55730386	31	2.0	31	96	0	115	24	9	24	41	1.84
55733474--55733534	29	2.1	29	90	0	95	27	14	29	27	1.95
55741221--55741367	29	5.2	29	78	6	124	28	14	31	24	1.95
55742063--55742555	245	2.0	245	98	0	950	31	12	22	33	1.92
55744982--55745413	48	9.0	48	92	0	693	35	6	26	31	1.81
55744982--55745413	144	3.0	144	96	0	801	35	6	26	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55745458--55745565	37	2.9	37	90	0	171	23	18	33	25	1.97
55748295--55748324	15	1.9	16	93	6	53	73	6	6	13	1.24
55748391--55748450	3	20.7	3	81	6	52	58	0	5	36	1.20
55749307--55749342	17	2.1	18	94	5	65	83	2	8	5	0.89
55750004--55750111	26	4.2	26	97	0	207	31	7	25	35	1.84
55752766--55752824	29	2.0	29	90	6	93	45	1	13	38	1.54
55757792--55757960	46	3.6	45	80	10	189	28	20	27	23	1.99
55757792--55758104	47	6.7	48	78	10	249	29	19	28	23	1.98
55757792--55758056	140	1.9	141	82	6	331	29	19	27	23	1.98
55768011--55768035	11	2.3	11	100	0	50	56	8	12	24	1.62
55768430--55768500	30	2.4	30	95	0	124	19	36	25	18	1.94
55769844--55769896	26	2.0	26	100	0	106	39	18	7	33	1.79
55771323--55771437	54	2.1	55	79	7	128	24	19	31	25	1.98
55772820--55772894	38	2.0	38	84	5	98	64	8	26	1	1.30
55780940--55780987	22	2.1	22	85	11	62	45	2	22	29	1.64
55781899--55781928	4	7.5	4	100	0	60	76	0	0	23	0.78
55782719--55782778	30	2.0	30	96	0	111	33	21	20	25	1.97
55789215--55789275	30	1.9	34	83	12	85	14	13	11	60	1.59
55789388--55789464	35	2.4	34	89	10	117	38	18	11	31	1.86
55790141--55790197	22	2.6	22	85	0	78	22	35	29	12	1.91
55804500--55804563	33	2.0	32	84	3	83	35	20	23	20	1.96
55804541--55804582	21	2.0	22	85	4	59	30	21	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55807143--55807178	18	2.0	18	100	0	72	44	11	27	16	1.82
55807146--55807185	18	2.2	18	86	0	53	50	15	17	17	1.79
55809496--55809908	48	8.6	48	77	3	400	25	28	19	26	1.99
55809595--55809927	96	3.5	96	91	0	513	26	28	19	25	1.99
55809496--55809908	144	2.9	144	83	3	481	25	28	19	26	1.99
55813690--55813714	9	2.8	9	100	0	50	0	0	60	40	0.97
55818927--55819031	52	2.0	52	98	0	201	38	20	15	26	1.92
55820867--55820899	17	1.9	17	93	0	57	39	0	6	54	1.25
55823835--55824526	138	5.0	138	88	1	1003	45	6	7	40	1.59
55823835--55824524	275	2.5	273	87	2	977	45	6	7	40	1.59
55836280--55836840	138	4.0	138	86	5	804	45	6	7	40	1.57
55836816--55836964	74	2.0	75	88	1	219	32	14	7	46	1.72
55837956--55838108	42	3.6	42	78	1	137	37	17	14	30	1.90
55838912--55838949	19	2.0	19	100	0	76	36	10	21	31	1.87
55841236--55841345	26	4.2	26	91	2	168	34	5	24	35	1.79
55842931--55843046	27	4.3	27	87	1	160	19	23	23	33	1.97
55842931--55843070	54	2.6	55	86	4	178	19	22	22	35	1.96
55846658--55846767	26	4.2	26	94	2	177	34	4	24	36	1.76
55848380--55848495	27	4.3	27	91	1	178	18	24	24	33	1.97
55848380--55848518	54	2.6	54	88	3	192	17	23	23	35	1.96
55858519--55858579	30	2.0	30	87	0	86	31	24	3	40	1.71
55866787--55866846	30	2.0	30	93	0	102	58	15	1	25	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55868622--55868656	18	1.9	18	100	0	70	51	5	28	14	1.65
55877051--55877156	40	2.6	40	92	1	176	24	20	26	28	1.99
55881577--55881748	93	1.8	93	95	2	310	28	29	20	20	1.98
55881570--55881745	46	3.8	46	79	14	209	29	29	20	20	1.98
55889132--55889309	46	3.8	46	78	11	211	29	28	20	21	1.98
55889139--55889310	93	1.8	93	93	2	301	28	29	20	21	1.98
55896216--55896431	46	4.6	46	82	7	240	28	20	28	22	1.98
55896216--55896431	94	2.3	94	83	12	259	28	20	28	22	1.98
55903339--55903376	18	2.2	18	86	9	53	63	2	10	23	1.39
55908442--55908675	116	2.0	115	99	0	459	23	15	19	42	1.89
55909295--55909338	21	2.0	22	86	4	63	22	0	4	72	1.02
55912384--55912436	21	2.7	19	78	16	54	45	0	3	50	1.19
55913067--55913099	12	2.8	12	90	9	50	51	3	3	42	1.32
55915499--55915546	25	1.9	25	100	0	96	58	0	0	41	0.98
55915555--55915603	17	2.8	18	84	6	73	34	2	0	63	1.06
55922772--55922814	17	2.6	16	88	3	59	41	4	0	53	1.21
55924628--55924680	26	2.1	24	89	6	79	54	1	0	43	1.11
55925384--55925416	16	2.1	16	94	0	57	33	12	39	15	1.84
55929317--55929493	45	4.0	45	90	1	259	25	22	27	25	2.00
55932515--55932547	15	2.2	15	100	0	66	12	39	6	42	1.67
55949497--55949527	3	10.3	3	100	0	62	0	32	0	67	0.91
55950318--55950362	8	5.5	8	86	5	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55950318--55950366	25	1.9	26	87	4	73	67	0	0	32	0.91
55950319--55950359	17	2.4	17	83	4	55	65	0	0	34	0.93
55953605--55953707	43	2.4	43	85	6	129	29	16	20	33	1.94
55962458--55962495	19	2.0	19	100	0	76	31	31	10	26	1.90
55971586--55971616	14	2.2	14	100	0	62	38	25	0	35	1.56
55974988--55975113	43	3.0	42	74	6	137	29	27	15	27	1.96
55984240--55984318	39	2.0	39	100	0	158	27	20	15	36	1.92
55987595--55987813	94	2.4	91	80	5	235	26	19	28	26	1.99
55987688--55987810	44	2.7	47	87	9	175	26	17	26	29	1.98
55995075--55995424	47	7.4	46	71	15	180	26	20	30	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343