genome.fa.s10.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  159  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52680842--52680892	26	2.0	26	96	0	93	11	23	35	29	1.90
52680764--52680985	103	2.2	103	93	1	374	18	18	31	31	1.95
52680905--52681055	71	2.1	72	91	2	243	23	16	29	30	1.96
52688395--52688445	26	2.0	26	96	0	93	11	23	35	29	1.90
52688317--52688539	103	2.2	104	92	2	369	17	18	31	31	1.95
52688458--52688609	71	2.1	72	92	1	252	23	17	29	30	1.97
52689860--52690065	46	4.5	46	74	13	149	24	29	18	26	1.98
52697940--52697999	10	5.9	10	82	2	57	26	5	1	66	1.21
52697944--52697997	20	2.7	19	86	8	81	25	5	1	66	1.23
52699294--52699513	49	4.6	48	75	11	195	25	27	20	26	1.99
52699248--52699465	98	2.3	91	81	6	238	26	27	19	26	1.99
52699295--52699513	93	2.3	94	80	9	232	26	27	20	26	1.99
52700861--52700975	49	2.3	49	81	8	119	27	20	26	26	1.99
52702459--52702579	48	2.6	47	80	8	149	21	22	22	33	1.97
52705753--52705802	26	1.9	26	95	0	91	16	24	12	48	1.79
52713947--52714025	27	2.9	27	80	0	95	20	29	13	36	1.91
52714102--52714268	45	3.8	43	76	11	162	20	22	16	41	1.90
52719026--52719070	22	2.0	22	87	8	65	31	4	26	37	1.76
52722481--52722527	20	2.3	20	96	0	85	27	12	14	44	1.82
52726787--52727335	47	11.6	47	92	1	873	29	29	8	32	1.87
52726787--52727335	239	2.3	239	93	1	926	29	29	8	32	1.87
52726787--52727335	96	5.8	95	90	3	811	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52731912--52732077	46	3.6	47	83	6	196	30	28	8	33	1.87
52732295--52732433	39	3.6	39	74	11	124	23	27	23	25	2.00
52742775--52742880	28	3.8	28	88	2	142	35	10	23	30	1.88
52742775--52742880	55	1.9	56	86	1	151	35	10	23	30	1.88
52744852--52745004	29	5.5	28	73	4	130	16	18	34	29	1.94
52744850--52745034	57	3.2	56	91	3	282	17	17	35	29	1.93
52744878--52745034	29	5.4	29	71	4	129	17	17	36	29	1.92
52749351--52749452	28	3.6	28	91	0	150	37	10	22	29	1.88
52751424--52751608	57	3.2	57	87	1	273	20	18	33	27	1.96
52751426--52751580	28	5.5	28	70	3	112	20	20	32	27	1.97
52751454--52751555	29	3.6	29	74	2	107	18	16	36	28	1.93
52751784--52751920	46	3.0	46	89	0	202	25	31	8	34	1.86
52751894--52752178	47	6.0	47	88	3	399	26	28	11	33	1.91
52752010--52752084	23	3.2	23	65	29	59	28	29	10	32	1.90
52758818--52758905	34	2.6	34	79	0	113	27	20	23	28	1.99
52767641--52767705	35	2.0	32	82	14	80	24	21	23	30	1.99
52776455--52776518	32	2.0	32	100	0	128	31	21	15	31	1.95
52779755--52779781	13	2.1	13	100	0	54	14	40	22	22	1.90
52780827--52781052	48	4.7	48	80	7	228	23	28	19	29	1.98
52780827--52781058	96	2.4	94	81	5	259	23	28	18	28	1.98
52784728--52784890	45	3.6	44	79	4	146	22	19	13	44	1.86
52788124--52788669	47	11.6	47	92	2	846	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52788124--52788669	96	5.8	94	92	2	864	29	29	8	32	1.87
52793639--52793869	40	5.8	40	93	2	367	22	29	24	24	1.99
52801728--52801949	40	5.6	40	94	1	365	22	27	25	24	2.00
52802759--52802851	46	2.0	46	97	0	177	32	26	5	35	1.79
52806341--52806383	15	2.8	16	78	7	52	39	20	0	39	1.53
52806474--52806516	13	3.3	13	93	0	77	32	23	4	39	1.75
52810520--52810575	11	5.5	11	71	16	57	35	12	19	32	1.89
52810509--52810575	20	3.3	20	93	0	116	34	11	20	32	1.90
52810626--52810745	23	5.1	23	90	4	195	29	21	20	28	1.98
52810625--52810752	24	5.4	23	89	5	193	29	21	21	27	1.98
52810624--52810745	47	2.6	47	96	0	226	30	21	20	27	1.98
52810960--52811023	31	2.1	31	87	0	92	37	15	21	25	1.93
52811848--52812070	46	4.7	48	78	15	195	25	31	17	25	1.97
52825552--52825793	43	5.6	43	91	1	376	12	24	31	31	1.93
52829988--52830165	27	6.6	27	85	3	133	29	28	14	26	1.95
52829988--52830164	54	3.3	54	83	5	214	29	28	14	26	1.95
52830009--52830164	81	1.9	82	88	3	235	29	28	14	26	1.95
52837905--52838081	27	6.6	27	84	2	203	29	28	15	27	1.96
52837926--52838080	81	1.9	81	88	2	231	29	28	15	27	1.96
52839544--52839824	148	1.9	155	80	12	343	29	24	18	27	1.98
52850899--52851000	25	4.0	26	86	7	138	34	5	23	36	1.79
52850899--52851000	50	2.0	51	88	5	154	34	5	23	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52857837--52857944	26	4.2	26	93	0	189	32	7	24	36	1.83
52859410--52859461	25	2.0	26	85	3	70	38	23	13	25	1.91
52863704--52863852	77	1.9	77	94	0	262	32	8	27	32	1.86
52863781--52863877	47	2.1	47	92	0	158	32	6	28	31	1.82
52867614--52867656	20	2.2	20	100	0	86	34	18	11	34	1.87
52870215--52870373	45	3.6	44	71	10	117	33	29	15	22	1.94
52870493--52870540	24	2.0	24	95	0	87	25	31	16	27	1.97
52870590--52870628	14	2.6	16	88	8	55	35	20	2	41	1.66
52871358--52871382	12	2.1	12	100	0	50	68	0	24	8	1.16
52872935--52873103	46	3.7	46	79	10	200	22	18	27	30	1.98
52872928--52873098	93	1.8	93	92	0	288	22	19	28	29	1.98
52873328--52873365	19	2.0	20	85	15	53	36	0	23	39	1.55
52875753--52875792	21	1.9	21	94	0	71	37	10	12	40	1.77
52875845--52875925	35	2.3	35	86	0	108	32	12	13	41	1.82
52876007--52876051	19	2.4	19	85	7	56	24	2	20	53	1.57
52876016--52876052	9	3.9	10	82	10	51	24	0	18	56	1.41
52876668--52876760	48	1.9	48	91	0	150	22	18	15	44	1.87
52877237--52877294	28	2.1	28	100	0	116	44	3	20	31	1.68
52890298--52890544	27	9.1	27	90	0	359	35	19	20	24	1.95
52890298--52890577	81	3.5	81	86	2	294	35	19	20	24	1.96
52890710--52890738	10	2.9	10	100	0	58	20	37	10	31	1.86
52891212--52891263	27	2.0	26	84	3	68	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52894371--52894395	11	2.3	11	100	0	50	28	0	0	72	0.86
52899719--52899773	26	2.1	26	100	0	110	29	10	3	56	1.51
52899815--52899855	17	2.3	18	87	4	57	24	24	0	51	1.49
52903234--52903347	42	2.7	42	78	5	106	28	24	14	31	1.95
52903848--52903899	26	2.0	25	85	14	70	30	26	3	38	1.74
52910926--52910979	24	2.2	24	84	12	67	29	37	16	16	1.91
52918864--52918917	24	2.2	24	84	12	67	29	37	16	16	1.91
52925697--52925761	33	2.0	33	84	0	85	24	21	24	29	1.99
52925912--52925966	27	2.1	26	82	3	65	43	18	18	20	1.88
52929360--52929393	17	2.0	17	100	0	68	64	5	0	29	1.17
52942972--52943178	53	3.8	54	79	1	236	21	23	17	37	1.94
52946019--52946180	81	2.0	81	96	0	297	32	16	11	39	1.85
52951444--52951522	28	2.8	28	80	0	86	36	11	22	29	1.89
52951932--52951972	21	1.9	22	85	5	57	39	4	24	31	1.76
52954513--52954655	55	2.6	55	75	7	137	13	27	28	30	1.95
52970801--52970878	28	2.8	28	80	7	86	33	12	25	28	1.93
52985290--52985375	43	2.0	43	82	13	106	26	30	19	23	1.98
52988254--52988320	35	1.9	35	100	0	134	50	11	8	28	1.69
52988455--52988586	53	2.5	53	80	5	140	19	25	19	35	1.95
52994556--52994600	22	2.0	22	83	8	56	57	0	0	42	0.98
52996906--52996943	19	2.0	20	85	15	53	39	23	0	36	1.55
52997712--52997771	30	2.0	30	86	0	84	33	25	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53004430--53004467	19	2.0	20	85	15	53	39	23	0	36	1.55
53004697--53004867	93	1.8	93	93	0	297	28	28	21	21	1.98
53004692--53004864	46	3.7	46	79	10	208	29	27	20	21	1.98
53007240--53007425	96	1.9	97	88	1	284	35	18	33	12	1.89
53008844--53008882	21	2.0	20	90	10	62	33	5	0	61	1.18
53008862--53008898	9	4.1	9	89	0	56	43	2	0	54	1.14
53010249--53010281	6	5.5	6	100	0	66	84	0	0	15	0.61
53013366--53013421	18	3.1	18	94	0	103	21	28	23	26	1.99
53018347--53018396	19	2.5	21	84	15	63	28	2	2	68	1.12
53019113--53019165	26	2.0	26	100	0	106	37	15	7	39	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343