genome.fa.s10.2.7.7.80.10.50.1000.342.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  342  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109652725--109652805	40	2.0	40	100	0	162	37	12	4	45	1.63
109658156--109658185	13	2.3	13	94	0	51	50	6	13	30	1.67
109659746--109659780	18	2.0	18	94	5	63	42	0	0	57	0.99
109659753--109659798	18	2.8	17	83	9	51	45	0	0	54	0.99
109659765--109659821	26	2.2	25	81	3	69	40	0	3	56	1.17
109659866--109660027	22	7.8	20	71	13	87	41	1	2	54	1.21
109659868--109659903	18	2.0	18	100	0	72	33	0	0	66	0.92
109659870--109659911	18	2.3	18	91	0	66	38	0	0	61	0.96
109659669--109659976	121	2.6	120	93	1	510	40	1	4	52	1.31
109660157--109660247	45	2.0	44	85	2	119	35	28	5	30	1.80
109660226--109660295	16	4.4	16	90	0	113	31	35	1	31	1.67
109662532--109662591	31	1.9	31	96	0	111	43	11	15	30	1.82
109664178--109664268	44	2.1	44	100	0	182	40	9	24	25	1.85
109666348--109666559	106	2.0	105	97	0	397	36	11	14	37	1.83
109670318--109670345	8	3.5	8	100	0	56	35	0	0	64	0.94
109672888--109672920	15	2.1	17	88	11	52	30	0	6	63	1.18
109673520--109673564	17	2.6	18	89	10	76	31	8	8	51	1.64
109683524--109683843	86	3.8	86	78	8	241	30	15	20	33	1.93
109683933--109684049	58	2.0	59	88	1	173	25	18	23	31	1.98
109683991--109684513	72	6.9	72	76	14	455	30	16	20	32	1.95
109683687--109685232	430	3.5	423	80	12	1222	30	16	20	32	1.95
109684360--109684513	73	2.1	73	85	7	213	31	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109684530--109685227	72	9.5	71	89	4	946	30	16	20	31	1.95
109687109--109687140	15	2.0	17	88	11	50	31	0	6	62	1.20
109687744--109687789	17	2.7	17	83	12	67	30	8	13	47	1.72
109688269--109688323	18	3.2	18	71	10	51	43	12	3	40	1.60
109688247--109688333	34	2.6	34	74	17	81	43	13	4	37	1.65
109694285--109694336	23	2.3	23	100	0	104	61	7	11	19	1.53
109697891--109697965	28	2.5	30	81	14	84	37	6	5	50	1.51
109698850--109699033	92	2.0	92	89	0	278	28	13	28	28	1.94
109703166--109703239	35	2.1	35	89	0	112	21	5	20	52	1.66
109712260--109712341	26	3.2	26	96	0	155	36	26	6	30	1.81
109715999--109716039	16	2.6	16	88	3	57	41	0	7	51	1.30
109724129--109724209	40	2.0	40	100	0	162	17	17	22	43	1.88
109724980--109725016	11	3.5	11	85	7	58	67	8	0	24	1.17
109724974--109725024	21	2.4	21	75	12	68	68	5	0	25	1.12
109729774--109729864	30	3.0	31	73	10	89	38	15	13	32	1.86
109731402--109731447	18	2.8	17	78	15	53	30	41	28	0	1.56
109733413--109733533	45	2.6	48	80	7	133	31	33	9	25	1.89
109738146--109738206	22	2.7	23	68	14	54	39	6	11	42	1.67
109738481--109738545	34	1.9	34	84	6	87	43	6	1	49	1.37
109744733--109744794	16	3.8	15	83	12	70	64	1	1	32	1.13
109744729--109744794	8	8.0	8	78	10	62	65	1	1	31	1.11
109744728--109744789	24	2.5	24	79	7	72	64	1	3	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109744941--109745005	25	2.7	25	88	6	91	52	4	7	35	1.51
109745112--109745157	25	1.9	25	86	8	69	60	0	4	34	1.16
109745644--109745818	30	5.8	30	92	0	287	22	3	48	25	1.66
109745644--109745818	60	2.9	60	97	0	323	22	3	48	25	1.66
109746566--109746615	14	3.6	14	81	7	57	64	4	12	20	1.43
109746595--109746839	76	3.3	75	82	4	289	34	20	17	28	1.95
109746826--109746853	14	2.0	14	100	0	56	57	7	21	14	1.61
109746968--109747017	14	3.6	14	81	7	57	64	4	12	20	1.43
109746827--109747351	180	3.0	172	85	8	556	39	19	16	24	1.91
109747147--109747197	14	3.5	15	84	7	61	64	3	11	19	1.41
109746928--109747351	180	2.3	182	90	4	696	39	18	15	25	1.91
109747177--109747418	78	3.2	75	83	8	266	36	20	16	26	1.93
109747220--109747582	71	4.8	73	77	15	285	35	19	15	29	1.93
109747299--109747666	155	2.3	158	83	9	448	35	18	15	29	1.92
109747710--109747993	77	3.8	74	83	6	351	33	21	14	30	1.93
109747676--109747975	77	4.0	77	83	7	350	32	21	16	30	1.95
109747298--109748054	416	1.8	417	82	7	998	35	19	16	28	1.93
109747717--109748140	161	2.7	158	82	9	478	34	21	15	28	1.94
109748280--109748618	75	4.5	76	87	6	433	32	20	15	32	1.94
109748280--109748636	147	2.4	147	82	7	427	34	19	14	31	1.92
109748636--109748810	70	2.5	70	85	4	212	33	22	14	29	1.94
109757113--109757152	16	2.5	16	92	8	64	65	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109757113--109757175	8	7.4	8	79	13	56	63	1	3	31	1.19
109757306--109757368	25	2.7	23	83	9	67	55	3	7	33	1.45
109757306--109757394	25	3.8	22	75	20	65	56	3	7	32	1.45
109757455--109757505	22	2.3	23	82	3	59	56	3	3	35	1.36
109757777--109757823	16	2.8	17	80	3	60	46	27	4	21	1.69
109770624--109770654	11	2.8	11	95	0	53	19	48	3	29	1.64
109771201--109771293	18	5.2	18	88	0	141	27	23	16	32	1.96
109775346--109775376	11	2.8	11	95	0	53	19	48	3	29	1.64
109775880--109776205	103	3.2	103	92	0	510	31	14	12	41	1.83
109782893--109783066	30	5.8	30	89	2	237	27	48	4	20	1.67
109783537--109783653	25	5.0	23	66	19	64	35	5	3	56	1.38
109783601--109783741	25	5.5	26	73	11	78	34	6	4	55	1.45
109783618--109783708	26	3.3	26	72	13	76	31	5	5	57	1.45
109783904--109783943	8	5.3	7	88	8	53	32	0	2	65	1.06
109783904--109783947	23	1.9	23	86	9	63	31	0	2	65	1.05
109783897--109783943	16	3.1	15	87	9	60	31	2	2	63	1.18
109790881--109791054	69	2.5	68	81	5	181	31	13	22	32	1.93
109791072--109791766	72	9.5	74	73	12	406	32	14	19	33	1.92
109791058--109791766	147	4.9	147	78	11	780	32	14	19	33	1.92
109791272--109791382	53	2.0	54	82	6	134	29	12	17	40	1.86
109790881--109791574	276	2.6	276	92	2	1120	31	14	19	33	1.92
109791205--109791611	128	3.0	129	76	14	397	32	14	18	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109791347--109791766	76	5.5	75	87	6	524	32	15	19	32	1.93
109791789--109791975	75	2.5	75	89	5	272	26	19	22	31	1.98
109793908--109794005	23	4.3	23	90	2	162	31	26	21	20	1.98
109793915--109794003	45	2.0	45	95	0	160	31	26	22	19	1.97
109794129--109794175	23	2.1	23	96	4	87	25	21	8	44	1.80
109795348--109795411	30	2.1	30	91	5	103	29	50	4	15	1.65
109795903--109796030	23	5.5	23	71	14	77	35	4	2	57	1.33
109795977--109796117	25	5.6	26	72	12	80	35	6	4	53	1.46
109795983--109796062	30	2.7	29	84	3	79	35	5	3	56	1.39
109796271--109796318	16	3.1	15	90	6	69	31	2	2	64	1.16
109796271--109796322	8	6.5	8	82	8	61	30	1	1	65	1.14
109799660--109799899	129	1.9	129	92	1	410	33	13	19	33	1.91
109800441--109800480	16	2.5	17	84	15	59	65	0	0	35	0.93
109800441--109800483	15	2.8	16	86	10	54	62	0	0	37	0.95
109809566--109809597	16	1.9	17	93	6	57	59	0	0	40	0.97
109810201--109810242	14	2.8	15	89	7	59	35	2	2	59	1.23
109810953--109811678	266	2.8	258	78	7	737	39	22	8	29	1.84
109812020--109812053	9	3.8	9	88	0	50	32	47	0	20	1.51
109820154--109820219	21	3.2	21	80	4	80	34	16	6	42	1.73
109820167--109820219	20	2.6	21	82	11	74	37	16	3	41	1.67
109821088--109821137	21	2.4	21	93	0	82	44	0	6	50	1.26
109824334--109824479	32	4.7	30	76	12	109	44	6	10	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109824334--109824485	31	4.9	30	75	11	112	44	5	11	38	1.66
109824364--109824480	61	1.9	63	85	3	166	45	5	8	41	1.57
109824354--109824480	31	4.1	30	76	11	114	43	5	11	40	1.63
109829862--109830069	104	2.0	104	97	0	389	37	12	9	39	1.77
109840859--109840933	27	2.6	28	81	10	80	56	9	0	34	1.32
109843193--109843538	53	6.7	52	82	7	425	29	15	6	49	1.68
109844127--109844164	4	9.5	4	94	0	67	50	26	0	23	1.50
109854145--109854202	22	2.5	22	78	10	55	70	0	18	10	1.15
109860840--109860933	39	2.4	38	80	5	100	24	28	23	23	1.99
109860990--109861182	96	2.0	96	98	0	377	27	30	11	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343