Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  282  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93517849--93517989
73
1.9
74
89
2
221
29
14
20
34
1.93
93517850--93518039
73
2.5
73
81
5
193
32
14
20
33
1.93
93519566--93519627
30
2.1
30
96
0
115
30
11
3
54
1.51
93519621--93519666
21
2.2
20
84
3
56
34
10
4
50
1.57
93522257--93522299
22
2.0
22
85
0
59
55
9
13
20
1.66
93522360--93522460
51
2.0
51
96
0
184
23
33
23
18
1.97
93528888--93528959
25
2.9
25
85
4
92
40
22
22
15
1.91
93528944--93528994
25
2.0
25
92
0
84
37
13
21
27
1.91
93535062--93535101
21
1.9
21
100
0
80
20
25
15
40
1.90
93538827--93538884
29
2.0
29
100
0
116
34
3
17
44
1.65
93552949--93553011
28
2.2
28
91
0
99
31
30
6
31
1.83
93558223--93558282
28
2.1
28
87
0
84
31
26
6
35
1.82
93558590--93558660
23
3.1
23
79
6
81
56
0
0
43
0.99
93558611--93558644
17
2.0
17
88
11
52
58
0
0
41
0.98
93558599--93558660
23
2.7
24
85
7
83
58
0
0
41
0.98
93559776--93559831
27
2.1
27
83
6
69
28
8
1
60
1.37
93559776--93559832
28
2.1
27
80
9
62
29
8
1
59
1.38
93567281--93567319
15
2.5
15
87
4
51
48
2
0
48
1.15
93588296--93588573
51
5.7
51
72
10
240
34
14
18
32
1.91
93588249--93588640
96
4.1
95
88
0
532
34
14
19
31
1.91
93588249--93588640
191
2.1
190
88
1
570
34
14
19
31
1.91
93588886--93588923
19
2.1
19
85
14
53
76
5
2
15
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93597311--93597348
14
2.6
14
84
15
51
39
0
2
57
1.12
93601640--93601685
21
2.2
21
88
7
67
43
0
2
54
1.12
93608242--93608313
29
2.5
29
93
2
119
47
6
8
37
1.61
93612986--93613015
2
15.0
2
100
0
60
50
0
0
50
1.00
93624040--93624073
17
2.1
17
89
10
54
76
0
20
2
0.92
93626151--93626196
11
4.4
11
83
10
51
78
0
21
0
0.76
93640376--93640423
16
3.1
15
90
6
69
64
2
2
31
1.16
93640372--93640427
24
2.3
24
81
6
69
66
1
1
30
1.12
93640372--93640423
8
6.5
8
82
8
61
65
1
1
30
1.14
93640539--93640592
18
2.8
19
75
8
56
53
5
7
33
1.52
93640653--93640786
25
5.6
25
68
15
77
57
2
4
35
1.34
93640578--93640721
25
5.7
26
72
11
93
54
4
7
33
1.50
93640648--93640734
27
3.3
27
70
13
74
58
2
4
34
1.31
93641256--93641443
27
6.9
28
81
14
207
23
3
46
25
1.69
93641272--93641432
55
3.0
53
86
11
215
24
3
45
25
1.69
93641256--93641443
81
2.3
82
85
9
260
23
3
46
25
1.69
93642199--93642237
14
2.7
15
84
11
55
66
5
12
15
1.41
93642368--93642402
14
2.5
14
90
0
61
60
5
17
17
1.55
93642300--93642475
90
2.0
87
86
3
244
36
19
18
26
1.94
93642206--93643011
163
5.1
158
79
14
746
35
21
16
26
1.95
93642388--93642837
73
5.9
74
77
13
414
32
21
18
27
1.96
93642255--93643228
237
4.2
234
85
7
1223
33
21
16
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93642658--93643068
71
5.5
73
74
15
344
32
21
16
29
1.95
93642836--93642869
14
2.5
14
90
4
52
64
8
8
17
1.47
93642890--93643087
73
2.7
71
84
2
252
32
21
14
31
1.93
93642702--93642995
158
1.9
155
85
6
405
33
21
16
28
1.95
93643079--93643220
72
2.0
73
91
1
232
38
23
15
21
1.92
93643404--93643720
71
4.3
72
84
8
365
35
18
15
30
1.92
93643370--93643703
76
4.5
75
86
6
425
32
20
15
31
1.94
93643409--93643720
147
2.1
148
85
5
436
35
19
15
29
1.92
93643726--93643966
71
3.5
71
85
2
267
34
20
13
31
1.92
93644118--93644997
73
12.8
70
71
18
529
33
20
16
29
1.94
93644124--93644513
65
5.5
72
76
16
343
34
20
16
28
1.94
93644416--93644909
130
3.8
128
76
18
420
33
20
16
29
1.95
93644637--93644997
143
2.5
143
86
8
500
32
19
16
30
1.94
93645000--93645169
67
2.5
69
84
7
199
32
22
15
29
1.94
93653367--93653402
12
3.0
12
95
0
63
41
5
25
27
1.77
93654975--93655022
16
3.1
15
90
6
69
64
2
2
31
1.16
93654971--93655026
24
2.3
24
81
6
69
66
1
1
30
1.12
93654971--93655022
8
6.5
8
82
8
61
65
1
1
30
1.14
93655138--93655194
19
2.8
20
73
7
62
56
5
7
31
1.49
93655173--93655265
25
3.8
24
77
9
82
53
5
7
33
1.52
93655226--93655295
28
2.4
29
83
6
81
58
4
4
32
1.37
93655345--93655390
25
1.9
25
86
8
69
60
0
4
34
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93655254--93655390
45
2.7
51
74
18
128
56
2
4
36
1.34
93655877--93655937
30
2.0
30
87
6
88
22
3
47
26
1.67
93657143--93657409
104
2.6
104
91
3
439
19
20
29
29
1.97
93658617--93658764
30
5.0
30
92
1
244
24
3
47
25
1.67
93658617--93658764
59
2.5
60
92
1
244
24
3
47
25
1.67
93661192--93661247
24
2.4
24
88
5
80
46
1
0
51
1.11
93661225--93661261
14
2.5
15
86
8
58
48
0
0
51
1.00
93661202--93661273
36
1.9
39
86
8
105
48
0
0
51
1.00
93671724--93671779
29
1.9
29
96
0
103
39
10
7
42
1.67
93671788--93671847
18
3.4
18
83
4
68
33
15
11
40
1.83
93671806--93671893
18
5.1
18
72
13
76
35
12
10
42
1.77
93671806--93671898
33
2.7
33
72
11
80
36
11
9
41
1.75
93673464--93673497
4
8.0
4
87
12
50
23
2
0
73
0.97
93673464--93673497
9
4.0
8
92
7
50
23
2
0
73
0.97
93673463--93673497
13
2.7
13
86
13
54
22
5
0
71
1.07
93675950--93675980
14
2.3
14
94
5
55
12
6
0
80
0.89
93676388--93676422
18
2.0
18
88
5
54
25
11
40
22
1.88
93679586--93679731
40
3.7
40
83
0
166
28
15
24
31
1.95
93688553--93688597
21
2.1
21
95
0
81
33
17
4
44
1.69
93695634--93695664
16
1.9
16
93
0
53
74
0
0
25
0.82
93695634--93695667
17
2.1
16
88
5
50
73
0
0
26
0.83
93695855--93695923
35
2.0
35
94
0
120
47
14
1
36
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93697656--93697721
31
2.1
31
91
0
105
31
13
15
39
1.86
93701837--93701884
19
2.6
18
83
9
53
2
27
2
68
1.11
93703351--93703404
20
2.7
19
72
8
54
33
0
1
64
1.04
93710205--93710291
5
16.6
5
69
9
57
36
5
21
35
1.78
93711106--93711142
18
2.1
18
94
0
65
70
2
16
10
1.27
93712131--93712694
152
3.7
151
95
2
1010
28
5
7
57
1.50
93712136--93712694
300
1.9
301
94
2
899
28
5
7
57
1.51
93712696--93713066
150
2.5
149
89
3
575
56
6
7
30
1.51
93713173--93713215
16
2.6
16
81
7
50
58
0
0
41
0.98
93713173--93713210
16
2.3
17
86
4
51
60
0
0
39
0.97
93716552--93716589
14
2.7
14
91
0
58
47
10
0
42
1.38
93741451--93741475
8
3.1
8
100
0
50
88
0
12
0
0.53
93745231--93745273
20
2.1
20
83
12
52
65
0
6
27
1.18
93746353--93746391
16
2.4
16
87
12
53
25
5
7
61
1.44
93748290--93748315
13
2.0
13
100
0
52
61
0
0
38
0.96
93748748--93748781
10
3.3
10
92
8
59
26
0
2
70
1.01
93750351--93750384
3
11.3
3
93
0
59
0
29
0
70
0.87
93751574--93751631
28
2.1
27
84
9
73
60
1
1
36
1.17
93752029--93752060
3
10.7
3
100
0
64
65
0
0
34
0.93
93755860--93756030
68
2.5
68
81
4
195
23
22
15
38
1.92
93758057--93758089
17
2.0
16
94
5
57
48
24
0
27
1.51
93759916--93759946
5
6.2
5
100
0
62
80
0
19
0
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93791778--93791828
26
2.0
26
88
7
77
27
13
7
50
1.69
93796821--93797011
102
1.9
102
85
0
265
39
15
12
32
1.85
93797609--93797658
25
2.0
25
100
0
100
36
4
20
40
1.71
93799251--93799289
14
2.8
14
84
0
60
12
17
0
69
1.19
93803719--93803771
18
2.8
19
85
5
81
67
3
0
28
1.07
93803715--93803770
9
6.2
9
78
13
62
66
3
0
30
1.09
93803835--93803895
31
2.0
31
81
12
72
49
1
1
47
1.21
93807547--93807632
39
2.2
39
89
0
127
20
22
27
29
1.99
93809558--93809589
5
6.6
5
92
7
57
81
0
0
18
0.70
93809559--93809589
9
3.3
9
95
4
53
80
0
0
19
0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343