genome.fa.s10.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  171  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56690865--56690932	34	2.0	34	88	0	100	42	25	4	27	1.74
56695767--56695800	14	2.5	13	90	9	59	17	8	0	73	1.08
56699451--56699498	16	3.1	16	77	14	55	14	6	0	79	0.92
56708676--56708762	25	3.5	25	82	0	111	16	12	27	43	1.84
56708746--56708883	20	6.9	20	79	0	150	13	20	27	38	1.90
56708886--56708968	26	3.2	26	75	5	87	21	20	21	36	1.96
56709071--56709140	34	2.1	34	83	5	88	24	25	21	28	1.99
56717612--56717734	39	3.2	39	89	0	174	29	2	19	48	1.61
56719965--56719999	15	2.3	15	85	0	52	28	37	22	11	1.89
56724667--56724929	40	6.6	40	87	3	316	24	20	28	26	1.99
56724706--56724964	80	3.3	80	84	3	238	25	20	28	25	1.99
56732628--56732890	40	6.6	40	87	3	316	24	20	28	26	1.99
56732667--56732925	80	3.3	80	84	3	238	25	20	28	25	1.99
56740619--56740646	5	5.6	5	100	0	56	78	0	0	21	0.75
56743135--56743198	31	2.1	31	90	0	101	25	23	15	35	1.94
56743405--56743534	24	5.4	24	94	2	217	27	21	21	29	1.99
56743405--56743534	47	2.7	48	91	3	217	27	21	21	29	1.99
56743591--56743647	9	5.9	9	73	15	51	35	21	8	35	1.84
56743579--56743649	20	3.5	20	94	0	124	32	19	11	36	1.87
56743584--56743638	11	5.4	11	70	16	55	30	20	12	36	1.90
56744891--56744963	27	2.7	27	73	12	78	24	20	20	34	1.97
56745004--56745055	27	1.9	27	88	0	77	38	13	9	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56745096--56745219	27	4.6	27	87	0	176	30	8	19	41	1.82
56745096--56745233	54	2.6	54	86	4	197	31	8	21	39	1.83
56745022--56745260	27	8.8	27	78	6	144	33	8	18	39	1.82
56745211--56745368	27	5.9	27	84	3	192	39	9	22	27	1.85
56759340--56759430	42	2.2	42	81	0	101	23	37	15	24	1.93
56759504--56759586	42	2.0	42	85	0	112	18	31	22	27	1.97
56762046--56762082	14	2.5	15	91	8	67	21	32	32	13	1.92
56762068--56762199	63	2.1	63	84	1	167	21	22	25	31	1.98
56768393--56768659	142	1.9	142	84	3	358	28	19	27	24	1.99
56776097--56776367	49	5.7	48	73	15	204	26	19	29	23	1.98
56776099--56776364	93	2.8	92	80	10	250	27	19	30	23	1.98
56778445--56778617	27	6.4	27	85	0	229	35	19	20	24	1.95
56779264--56779333	31	2.3	31	82	5	88	24	20	20	35	1.96
56783822--56783878	30	1.9	30	85	0	78	14	21	12	52	1.73
56784023--56784120	9	12.3	9	68	27	62	50	0	1	48	1.07
56784021--56784134	39	3.4	31	69	27	90	49	0	0	50	1.06
56784024--56784120	39	2.5	39	86	8	153	50	0	1	48	1.07
56784024--56784125	38	2.7	38	87	6	152	50	0	0	49	1.07
56784042--56784110	18	3.5	19	74	18	70	47	0	1	50	1.09
56786203--56786310	26	4.2	26	93	0	189	32	7	24	36	1.83
56791321--56791381	30	2.0	30	83	0	77	32	21	6	39	1.79
56794753--56794860	26	4.2	26	92	0	180	31	8	24	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56797376--56797551	39	4.5	39	85	5	196	26	20	28	25	1.99
56797329--56797551	78	2.8	78	81	9	222	25	21	28	25	1.99
56797409--56797584	78	2.3	79	83	4	205	26	21	28	23	1.99
56804954--56805125	79	2.2	78	83	7	213	25	22	28	24	1.99
56804901--56805123	40	5.6	39	79	7	207	25	21	27	24	1.99
56804981--56805158	79	2.2	80	82	3	200	25	22	28	23	1.99
56806630--56806699	34	2.0	35	97	2	133	31	7	18	42	1.77
56818204--56818263	19	3.0	21	67	20	56	25	5	25	45	1.73
56818196--56818333	39	3.5	39	88	0	204	27	3	23	45	1.69
56819895--56819972	39	2.0	39	87	5	113	28	5	23	43	1.75
56823618--56823740	42	2.9	42	83	6	142	30	25	14	29	1.95
56833021--56833090	29	2.4	30	80	15	85	57	10	1	31	1.41
56835131--56835394	43	6.1	43	95	0	465	29	34	25	10	1.90
56852547--56852596	18	2.7	18	84	6	55	30	2	12	56	1.47
56854757--56854782	13	2.0	13	100	0	52	23	23	30	23	1.99
56854905--56854948	20	2.1	22	91	8	74	54	22	4	18	1.61
56855604--56855629	13	2.0	13	100	0	52	38	15	7	38	1.76
56862516--56862728	42	5.1	41	82	7	252	27	23	21	27	1.99
56862515--56862728	84	2.5	83	84	4	295	27	23	21	27	1.99
56867555--56867724	46	3.7	46	78	10	193	23	21	27	27	1.99
56867555--56867725	93	1.8	93	89	0	270	23	21	28	26	1.99
56880202--56880351	75	2.0	75	94	0	264	30	12	29	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56886286--56886548	136	1.9	138	86	1	377	46	6	7	40	1.57
56886457--56886636	88	2.1	86	88	2	261	46	6	6	41	1.53
56887512--56887619	37	2.9	37	91	0	162	25	31	19	23	1.98
56887738--56888506	47	16.3	47	94	0	1322	29	28	8	33	1.87
56888510--56888812	48	6.3	48	92	0	480	32	27	5	34	1.81
56888511--56888814	145	2.1	146	91	0	493	32	26	5	34	1.81
56894476--56894726	39	6.4	39	83	0	259	32	17	30	20	1.95
56894509--56894572	19	3.3	19	71	4	65	32	18	34	14	1.91
56894528--56894592	20	3.3	20	73	4	69	29	18	35	16	1.93
56894520--56894581	19	3.2	19	69	13	54	35	17	30	16	1.92
56894476--56894718	78	3.1	78	85	0	315	32	16	30	20	1.95
56894476--56894711	117	2.0	117	87	0	337	32	16	30	20	1.95
56898624--56898702	29	2.7	29	86	5	106	27	32	15	24	1.95
56910292--56910511	91	2.3	95	79	9	238	26	27	17	28	1.98
56915450--56915513	30	2.2	29	94	2	110	34	21	17	26	1.95
56921480--56921519	20	2.0	20	85	9	55	47	25	0	27	1.52
56929485--56929705	48	4.7	47	83	5	252	25	29	17	27	1.97
56929490--56929705	96	2.3	93	86	4	281	26	29	17	26	1.97
56931560--56931616	30	1.9	30	92	0	96	26	21	28	24	1.99
56938117--56938262	48	3.0	48	88	0	211	28	23	19	27	1.99
56940989--56941205	40	5.5	40	91	3	334	24	27	23	23	2.00
56940989--56941202	79	2.7	78	91	4	324	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56940989--56941205	119	1.8	119	90	4	348	24	27	23	23	2.00
56949283--56949498	40	5.5	40	92	4	334	24	28	23	24	2.00
56951449--56951613	43	3.9	41	74	7	132	23	17	27	31	1.97
56952310--56952355	23	2.0	22	87	4	65	13	0	23	63	1.30
56952939--56952991	27	2.0	27	92	7	90	32	20	13	33	1.91
56959162--56959267	27	3.9	27	79	4	124	26	20	11	41	1.86
56971430--56971588	43	3.7	42	78	5	133	23	17	25	33	1.96
56971446--56971536	42	2.1	44	86	8	125	20	16	28	34	1.95
56971454--56971572	42	2.8	44	77	8	120	25	18	23	32	1.97
56975622--56976908	641	2.0	641	97	0	2421	30	13	22	32	1.93
56979730--56979892	43	3.8	42	78	11	170	22	19	26	31	1.98
56984174--56984335	43	3.8	42	86	9	231	12	24	32	29	1.93
56984174--56984335	85	1.9	84	87	8	240	12	24	32	29	1.93
56987594--56987769	27	6.6	27	77	8	162	27	14	27	30	1.95
56995576--56995753	27	6.6	27	83	3	205	26	15	28	29	1.96
56995577--56995732	82	1.9	81	88	3	233	26	15	28	29	1.96
56995573--56995753	82	2.2	81	83	2	229	27	15	27	29	1.96
57001225--57001304	38	2.1	38	85	0	106	21	22	26	30	1.99
57001327--57001384	27	2.1	27	93	0	98	10	24	32	32	1.89
57001297--57001427	70	1.9	70	91	0	217	11	25	32	30	1.91
57001349--57001448	43	2.3	43	91	0	164	13	25	33	29	1.93
57001765--57001872	45	2.5	42	83	8	119	24	24	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57009011--57009082	33	2.2	32	82	7	83	19	25	18	37	1.94
57020762--57020804	21	2.0	21	100	0	86	41	23	9	25	1.84
57028428--57028558	38	3.2	38	75	17	136	31	24	15	29	1.95
57028468--57028601	48	2.8	48	86	1	189	32	22	14	30	1.94
57035686--57035716	16	1.9	16	93	0	53	35	0	32	32	1.58
57049327--57049424	18	5.4	18	86	2	117	75	5	5	14	1.15
57049327--57049424	12	8.2	12	83	0	106	75	5	5	14	1.15
57049327--57049412	36	2.4	36	94	3	147	76	4	4	13	1.10
57051052--57051114	21	2.9	21	81	9	65	73	1	12	12	1.18
57068045--57068506	47	9.7	47	91	2	655	27	30	9	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343