genome.fa.s10.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  226  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74462351--74462392	15	2.7	16	82	14	52	52	2	0	45	1.13
74462360--74462508	15	9.9	15	65	23	55	49	2	1	46	1.24
74462349--74462559	107	2.0	108	95	0	379	49	4	1	44	1.32
74462441--74462499	16	3.8	16	72	14	52	52	1	1	44	1.21
74462352--74462615	107	2.5	107	86	6	335	50	4	1	43	1.30
74463359--74463385	13	2.1	13	100	0	54	22	0	29	48	1.51
74466782--74466836	29	1.9	29	96	3	103	30	29	20	20	1.97
74474333--74474359	13	2.1	13	100	0	54	40	22	0	37	1.54
74476186--74476268	40	2.0	42	90	4	134	42	19	12	26	1.86
74477971--74478035	31	2.1	31	91	0	103	32	9	10	47	1.70
74483916--74484103	59	3.2	58	68	10	157	42	3	4	50	1.38
74483905--74484201	119	2.5	120	94	2	508	42	2	5	49	1.38
74484025--74484059	18	2.0	17	88	5	52	45	0	0	54	0.99
74483979--74484161	63	3.1	58	65	25	139	42	2	7	48	1.45
74484158--74484199	15	2.7	16	82	14	52	45	0	2	52	1.13
74484149--74484190	15	2.9	15	82	10	52	47	0	0	52	1.00
74484327--74484431	45	2.5	40	76	18	106	30	30	4	34	1.78
74484344--74484433	45	2.0	44	89	6	137	33	28	5	32	1.80
74484413--74484469	16	3.6	16	97	0	105	22	36	7	33	1.81
74487517--74487591	37	2.1	36	90	9	118	33	8	29	29	1.86
74487908--74487948	21	2.0	21	85	0	55	41	9	9	39	1.71
74494249--74494388	6	23.3	6	100	0	280	50	33	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74494852--74494906	27	2.0	27	100	0	110	34	10	21	32	1.89
74495436--74495521	27	3.2	27	75	6	93	27	5	22	44	1.75
74495436--74495521	9	9.6	9	83	7	77	27	5	22	44	1.75
74500158--74500208	26	2.0	26	84	7	68	13	15	5	64	1.46
74510367--74510689	78	4.1	78	86	4	420	34	14	13	38	1.85
74510283--74510677	155	2.4	157	81	9	447	33	15	12	38	1.85
74510673--74510839	86	1.9	87	92	3	284	37	8	11	42	1.72
74510822--74510944	57	2.1	59	95	3	223	30	11	12	45	1.77
74515269--74515311	15	2.9	15	80	16	54	48	0	6	44	1.29
74515928--74515971	16	2.8	16	80	12	56	43	4	0	52	1.22
74516074--74516118	19	2.4	19	100	0	90	42	8	11	37	1.72
74516146--74516185	20	2.0	21	90	5	64	55	0	0	45	0.99
74521789--74521826	14	2.7	14	88	8	51	65	0	0	34	0.93
74522722--74522770	25	2.0	25	83	0	62	55	4	0	40	1.19
74523275--74523306	11	2.6	13	80	19	50	37	0	31	31	1.58
74523641--74523696	26	2.2	26	80	6	60	39	17	8	33	1.81
74525888--74526050	44	3.8	42	76	9	127	23	17	26	32	1.96
74525934--74526045	41	2.7	41	77	10	111	25	16	25	32	1.97
74538166--74538255	18	5.0	18	81	0	108	35	16	20	27	1.94
74538167--74538255	36	2.5	36	88	0	133	35	16	19	28	1.93
74539234--74539301	9	7.1	9	78	9	55	55	1	1	41	1.18
74539236--74539303	28	2.4	30	85	7	88	55	1	1	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74539357--74539393	19	1.9	19	89	10	58	64	0	5	29	1.15
74540957--74541019	30	2.1	30	90	0	99	57	12	3	26	1.51
74541479--74541505	14	1.9	14	100	0	54	40	7	0	51	1.30
74544581--74545202	308	2.0	308	98	0	1208	25	18	29	27	1.98
74547511--74547548	19	2.0	19	100	0	76	31	21	26	21	1.98
74563177--74563276	37	2.7	36	77	10	103	28	16	20	36	1.93
74565746--74565896	71	2.1	72	91	2	243	30	29	16	23	1.96
74565816--74566037	103	2.2	103	93	1	374	31	31	18	18	1.95
74565909--74565959	26	2.0	26	96	0	93	29	35	23	11	1.90
74566366--74566429	30	2.2	29	81	10	76	29	28	6	35	1.82
74566373--74566429	30	1.9	30	85	3	80	29	24	7	38	1.82
74573366--74573592	104	2.2	104	92	2	377	31	31	18	18	1.95
74573921--74573984	30	2.2	29	81	10	76	29	28	6	35	1.82
74573928--74573984	30	1.9	30	85	3	80	29	24	7	38	1.82
74576678--74576734	28	2.0	28	100	0	114	47	14	10	28	1.76
74580783--74580814	15	2.0	17	88	11	50	43	31	0	25	1.55
74584549--74584649	41	2.5	41	98	0	193	24	29	22	22	1.99
74585613--74585637	13	1.9	13	100	0	50	32	4	24	40	1.73
74586724--74586851	44	3.0	41	79	10	132	23	15	26	34	1.95
74587945--74588142	41	4.8	41	97	0	360	29	22	19	27	1.98
74599237--74599263	13	2.1	13	100	0	54	55	0	14	29	1.40
74604256--74604313	17	3.5	15	82	17	71	75	5	1	17	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74604256--74604313	5	10.6	5	82	17	71	75	5	1	17	1.06
74624044--74624104	30	2.0	30	84	6	79	27	24	8	39	1.84
74627707--74627739	17	2.0	17	94	5	59	12	24	0	63	1.28
74628801--74628911	27	4.1	26	86	4	123	20	22	21	35	1.96
74632258--74632346	42	2.1	42	95	0	160	51	14	5	28	1.65
74632371--74632410	19	2.2	18	95	4	71	42	17	0	40	1.49
74639368--74639425	30	1.9	30	96	0	107	36	24	6	32	1.82
74639183--74639611	215	2.0	215	90	0	678	26	22	8	41	1.82
74639398--74639939	187	2.9	185	86	2	728	25	23	8	42	1.83
74643217--74643269	23	2.3	23	86	3	70	39	9	7	43	1.65
74644978--74645051	31	2.5	30	78	8	80	48	4	2	44	1.35
74645317--74645373	26	2.2	26	81	6	62	70	0	5	24	1.08
74645598--74645677	23	3.2	23	66	27	63	36	2	1	60	1.18
74646023--74646064	21	2.0	21	90	0	66	30	26	11	30	1.92
74659584--74659621	20	2.0	20	89	5	60	39	2	13	44	1.57
74659789--74659828	17	2.3	17	91	4	62	60	0	5	35	1.19
74659790--74659856	8	8.4	8	75	17	59	58	0	4	37	1.19
74659859--74659900	18	2.3	19	79	8	50	71	0	16	11	1.14
74659864--74659911	22	2.1	23	81	11	55	70	2	16	10	1.24
74661316--74661348	16	1.9	18	88	11	52	27	9	9	54	1.62
74663768--74663989	6	37.5	6	89	5	274	80	13	3	2	0.95
74663761--74663928	1	168.0	1	68	0	102	84	13	0	2	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74664101--74664134	17	2.1	16	88	5	50	23	23	29	23	1.99
74670227--74670444	47	4.7	47	75	8	187	29	19	28	22	1.98
74670226--74670397	94	1.8	94	87	2	256	29	19	28	22	1.98
74670227--74670436	94	2.2	94	82	5	246	30	19	28	22	1.98
74676899--74676928	16	1.9	15	93	6	51	26	3	10	60	1.45
74679637--74679744	26	4.2	26	87	0	162	37	25	7	30	1.83
74683816--74683846	8	3.8	8	95	4	53	19	3	0	77	0.90
74690004--74690068	32	2.0	32	84	0	85	44	4	27	23	1.73
74694045--74694103	22	2.6	22	76	15	66	61	3	1	33	1.23
74694123--74694261	42	3.3	43	81	5	176	24	17	28	30	1.97
74695761--74695800	20	1.9	22	90	10	66	35	10	15	40	1.80
74703027--74703073	25	2.0	25	83	8	62	27	14	4	53	1.60
74703334--74703598	46	5.9	46	84	7	323	21	24	15	38	1.92
74703516--74703588	38	1.9	38	100	0	146	23	26	17	32	1.97
74711180--74711211	16	2.0	16	100	0	64	25	6	25	43	1.77
74723394--74723433	7	5.7	7	82	11	55	30	2	25	42	1.68
74727131--74727181	22	2.3	22	96	0	93	25	29	33	11	1.91
74729081--74729350	46	5.7	47	75	13	200	23	30	19	26	1.98
74739207--74739597	196	2.0	196	94	0	692	43	4	16	35	1.69
74752927--74753096	45	3.8	44	78	5	135	22	20	14	43	1.87
74753085--74753233	45	3.3	45	71	5	122	22	16	18	42	1.88
74758392--74758439	25	1.9	25	82	0	60	31	27	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74763138--74763181	8	5.5	8	77	0	52	47	15	25	11	1.79
74763130--74763181	16	3.2	16	94	0	77	48	15	25	11	1.78
74763115--74763173	24	2.5	24	80	5	66	47	15	23	13	1.81
74767253--74767295	16	2.7	16	85	0	59	48	16	23	11	1.78
74767518--74767625	29	3.8	29	84	6	112	28	15	25	29	1.96
74768625--74768669	22	2.0	22	82	0	54	26	0	13	60	1.34
74769915--74770025	48	2.3	48	87	0	159	36	27	14	21	1.93
74771779--74771845	34	2.0	34	93	0	116	20	26	26	25	1.99
74780400--74780551	48	3.2	48	85	1	207	32	29	17	20	1.96
74780414--74780576	48	3.4	48	84	5	206	33	28	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343