genome.fa.s10.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  158  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52362562--52362614	22	2.4	22	83	0	79	22	0	9	67	1.19
52365671--52365729	25	2.4	25	97	0	109	40	23	6	28	1.80
52365942--52365983	19	2.3	19	87	4	59	19	9	2	69	1.28
52368057--52368118	27	2.3	27	82	0	79	30	19	32	17	1.95
52369339--52369432	47	2.0	47	95	2	172	32	11	22	32	1.90
52369556--52369647	17	5.4	18	70	23	58	51	3	3	42	1.34
52375376--52375827	47	9.6	47	91	2	717	29	29	8	32	1.87
52375376--52375827	96	4.8	94	92	2	717	29	29	8	32	1.87
52375376--52375827	143	3.2	142	94	1	755	29	29	8	32	1.87
52377764--52377883	56	2.1	56	98	0	231	22	23	9	45	1.81
52379154--52379481	40	8.1	40	85	7	419	24	27	22	25	2.00
52379371--52379465	48	2.0	48	100	0	190	23	25	25	26	2.00
52381704--52382156	47	9.6	47	93	1	744	29	29	8	32	1.87
52381704--52382156	96	4.8	94	93	2	744	29	29	8	32	1.87
52381704--52382156	143	3.2	143	94	0	766	29	29	8	32	1.87
52384094--52384213	56	2.1	56	98	0	231	22	23	9	45	1.81
52388040--52388077	19	2.0	20	85	15	53	39	23	0	36	1.55
52388307--52388477	93	1.8	93	91	0	279	29	28	20	22	1.98
52388302--52388480	46	3.9	46	75	10	175	29	27	20	22	1.99
52391490--52391517	14	2.0	14	100	0	56	35	0	14	50	1.43
52394410--52394503	39	2.5	35	80	14	91	52	2	3	42	1.29
52394886--52394915	9	3.3	9	90	0	51	40	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52408032--52408219	94	2.0	94	96	0	349	27	21	14	36	1.93
52410726--52410765	21	2.0	20	85	14	55	22	25	35	17	1.95
52415051--52415090	20	2.0	20	85	0	53	15	22	15	47	1.82
52415126--52415198	26	2.9	25	93	4	128	28	12	19	39	1.88
52417319--52417485	40	4.2	40	86	5	216	25	27	23	23	2.00
52417319--52417485	79	2.1	80	85	4	223	25	27	23	23	2.00
52425344--52425528	40	4.7	39	87	4	246	24	28	23	23	2.00
52425337--52425531	79	2.5	80	86	2	268	24	27	23	24	2.00
52431792--52431843	3	17.3	3	84	7	70	34	0	0	65	0.93
52438359--52438565	35	5.6	35	69	13	137	19	17	23	38	1.93
52438328--52438577	75	3.3	75	81	2	322	21	18	21	38	1.93
52438328--52438455	40	3.3	39	73	10	129	18	17	24	39	1.92
52444589--52444813	40	5.7	40	89	3	287	25	20	26	27	1.99
52444589--52444846	120	2.2	119	81	6	292	26	20	26	26	1.99
52449770--52449813	10	4.6	9	81	13	52	77	2	9	11	1.08
52460230--52460411	40	4.6	40	91	6	273	26	26	22	24	2.00
52460230--52460411	80	2.3	80	93	2	305	26	26	22	24	2.00
52466262--52466489	46	5.0	46	91	1	314	38	14	24	22	1.91
52467631--52467694	23	2.8	23	87	0	92	39	18	20	21	1.93
52471421--52471452	16	2.0	16	100	0	64	50	31	6	12	1.65
52473286--52473392	28	3.8	28	92	0	160	30	25	10	33	1.89
52475950--52476061	29	3.9	28	85	2	143	29	12	28	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52483225--52483398	46	3.8	46	77	13	203	20	20	30	28	1.98
52483220--52483391	93	1.8	93	94	0	308	20	20	30	28	1.98
52490179--52490354	46	3.8	46	77	12	207	19	21	30	28	1.98
52490175--52490347	93	1.9	93	96	0	319	20	21	30	27	1.98
52492671--52492822	54	2.8	54	81	2	180	25	20	30	24	1.99
52495052--52495103	20	2.6	19	88	8	77	42	19	11	26	1.85
52495448--52495513	32	2.0	33	91	2	107	34	21	6	37	1.78
52496941--52497078	53	2.6	53	82	2	159	37	20	21	20	1.94
52502580--52502613	3	11.3	3	100	0	68	32	0	35	32	1.58
52504395--52504436	10	3.9	11	82	11	52	52	0	2	45	1.13
52509192--52509301	38	3.1	37	66	26	94	46	6	2	44	1.43
52509141--52509301	67	2.4	68	87	3	218	44	6	4	43	1.52
52509274--52509308	18	1.9	18	88	0	52	51	2	0	45	1.16
52517936--52517961	13	2.0	13	100	0	52	30	15	0	53	1.42
52524311--52524381	21	3.5	20	86	3	90	47	18	19	14	1.82
52524322--52524431	53	2.1	53	89	0	166	50	16	18	14	1.77
52525931--52526009	24	3.5	22	81	11	88	24	21	21	32	1.98
52527109--52527156	24	2.0	24	91	0	78	29	27	27	16	1.97
52530366--52530422	15	3.9	15	88	2	89	35	0	12	52	1.39
52530795--52530881	21	4.0	23	77	11	83	16	21	24	37	1.93
52530807--52530856	21	2.3	22	93	6	84	12	26	28	34	1.92
52531980--52532020	15	2.7	15	84	0	55	31	2	14	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52537302--52537335	12	2.8	12	90	4	50	67	0	29	2	1.05
52538091--52538199	45	2.4	45	86	6	157	24	16	23	34	1.95
52545245--52545301	24	2.5	22	76	20	71	24	21	17	36	1.94
52545259--52545324	24	2.7	24	86	6	80	28	22	16	31	1.96
52545818--52545857	18	2.2	18	90	0	71	37	5	27	30	1.78
52546941--52546972	4	8.0	4	92	0	55	28	0	0	71	0.86
52551552--52551726	47	3.7	48	80	10	157	27	18	29	24	1.98
52551504--52551677	94	1.9	94	84	4	235	27	18	29	24	1.98
52551552--52551726	94	1.9	95	83	6	230	27	18	29	24	1.98
52555177--52555346	47	3.7	45	82	12	186	28	18	30	22	1.97
52555174--52555346	94	1.8	94	90	2	276	28	18	30	23	1.98
52570258--52570578	47	6.7	48	74	11	223	29	21	28	21	1.98
52570258--52570578	94	3.4	93	80	9	317	29	21	28	21	1.98
52570302--52570577	146	1.9	144	82	5	342	29	20	28	21	1.98
52570304--52570579	47	5.8	48	74	10	224	29	21	28	21	1.98
52570779--52570824	22	2.0	23	95	4	85	19	13	17	50	1.78
52577171--52577195	13	1.9	13	100	0	50	16	4	16	64	1.44
52577865--52578185	94	3.4	95	81	7	330	28	21	29	21	1.98
52577864--52578188	47	6.8	48	72	11	197	28	21	29	21	1.98
52577911--52578186	47	5.8	48	73	10	215	28	21	29	21	1.98
52578389--52578430	22	1.9	22	100	0	84	19	14	16	50	1.79
52584101--52584324	101	2.2	101	81	5	274	32	16	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52584585--52584618	16	2.1	16	88	5	50	52	0	14	32	1.42
52588366--52588669	47	6.4	47	91	1	428	27	29	8	34	1.86
52597498--52597692	33	5.8	34	73	11	123	34	15	23	27	1.94
52597496--52597691	101	1.9	101	91	0	320	34	15	22	27	1.94
52597630--52597707	33	2.4	32	78	6	84	35	17	23	23	1.95
52598671--52598714	23	1.9	23	85	0	61	43	4	13	38	1.65
52602765--52602811	14	3.3	14	72	16	51	46	12	0	40	1.42
52605797--52605885	40	2.2	39	82	11	101	30	15	25	28	1.96
52621925--52622141	46	4.7	44	71	14	125	27	17	29	25	1.98
52633030--52633066	18	2.1	18	100	0	74	48	10	16	24	1.77
52634517--52634597	34	2.4	34	75	6	85	29	0	3	66	1.09
52640010--52640059	26	1.9	26	95	0	91	34	26	24	16	1.95
52642783--52643259	48	9.9	48	78	0	452	26	27	17	28	1.97
52642783--52643259	96	5.0	96	85	0	569	26	27	17	28	1.97
52642783--52643259	144	3.3	144	80	1	528	26	27	17	28	1.97
52643255--52643350	48	2.0	48	100	0	192	29	20	14	35	1.93
52644814--52644869	25	2.2	25	83	0	67	35	17	25	21	1.95
52645668--52645713	21	2.1	23	84	15	62	67	0	26	6	1.15
52645957--52646000	22	2.0	22	82	8	54	34	6	22	36	1.81
52648215--52648290	26	2.9	25	75	7	71	17	22	22	38	1.93
52648230--52648297	26	2.7	26	83	2	84	17	20	23	38	1.93
52648309--52648354	24	2.0	23	86	4	65	15	19	21	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52652685--52652713	15	2.0	15	93	6	51	20	6	3	68	1.27
52653273--52653306	16	2.1	16	88	0	50	58	0	11	29	1.33
52656281--52656334	29	2.0	29	86	13	80	48	0	0	51	1.00
52666624--52666753	49	2.7	49	87	0	188	26	26	19	28	1.99
52666771--52666892	48	2.6	48	86	1	183	25	27	18	29	1.98
52667452--52667490	20	2.0	20	85	10	53	35	20	0	43	1.52
52675354--52675499	37	3.9	37	96	0	247	26	30	19	23	1.98
52675706--52676239	47	11.1	47	87	5	726	26	30	12	30	1.93
52675706--52676239	145	3.7	144	89	5	783	26	30	12	30	1.93
52678420--52678598	85	2.1	85	98	0	349	26	27	8	37	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343