genome.fa.s10.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  113  of  343  ( 41150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38096191--38096215	13	1.9	13	100	0	50	76	16	0	8	1.02
38099089--38099272	101	1.8	99	83	2	242	28	27	18	25	1.98
38104817--38105000	101	1.8	98	83	6	244	29	25	19	26	1.98
38110530--38110669	51	2.8	50	80	3	174	29	26	19	25	1.98
38136240--38136369	50	2.6	49	91	1	197	24	16	28	30	1.96
38136187--38136381	50	3.9	49	80	4	185	25	17	27	29	1.97
38139167--38139248	28	2.9	28	96	0	146	46	24	10	18	1.81
38146445--38146522	27	2.8	28	86	3	104	48	20	8	21	1.77
38152542--38152635	6	15.3	6	71	16	68	51	14	13	20	1.77
38152553--38152635	19	4.5	18	79	8	80	51	14	13	20	1.75
38152562--38152632	19	3.8	19	83	5	92	50	15	14	19	1.77
38153049--38153221	27	6.4	27	84	1	159	26	17	17	37	1.93
38153149--38153545	27	14.7	26	78	4	114	32	7	21	37	1.82
38153203--38153576	54	6.9	54	79	0	246	33	7	21	36	1.82
38153238--38153413	81	2.2	81	83	0	226	40	6	19	34	1.77
38153266--38153423	81	2.0	81	87	2	228	41	6	20	32	1.77
38153430--38153569	27	5.2	26	78	7	120	28	10	22	38	1.87
38162846--38162921	23	3.3	23	90	3	118	21	28	35	14	1.92
38168383--38168461	39	2.0	39	90	2	122	26	21	26	25	1.99
38175084--38175267	39	4.6	41	81	11	197	25	22	27	25	2.00
38175084--38175267	79	2.3	80	82	8	216	25	22	27	25	2.00
38175137--38175299	78	2.1	78	81	7	188	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38180208--38180448	49	4.9	49	79	3	266	29	26	19	25	1.98
38180208--38180448	100	2.4	99	82	2	286	29	26	19	25	1.98
38190609--38190753	53	2.7	55	81	4	170	20	24	17	37	1.94
38193074--38193195	29	4.2	29	82	4	165	37	15	24	22	1.93
38199949--38200120	94	1.8	94	88	0	263	22	22	28	27	1.99
38200349--38200386	19	2.0	20	85	15	53	36	0	23	39	1.55
38206720--38206762	16	2.7	16	81	0	50	55	13	16	13	1.69
38206967--38207055	28	3.1	28	85	7	126	28	12	28	31	1.93
38210577--38210873	27	11.0	27	86	0	389	36	19	20	23	1.95
38211276--38211354	31	2.5	31	83	0	95	17	20	15	46	1.83
38213235--38213324	29	3.1	28	84	7	119	28	14	27	28	1.95
38214880--38215052	46	3.7	46	79	10	208	22	20	27	30	1.98
38214877--38215047	93	1.8	93	93	0	297	22	20	28	29	1.98
38218725--38218753	15	1.9	15	100	0	58	31	0	13	55	1.39
38219067--38219221	43	3.7	42	72	11	138	27	18	27	27	1.98
38231769--38231861	48	1.9	48	86	4	134	30	17	25	26	1.97
38236269--38236989	47	15.1	47	92	4	1131	32	9	29	28	1.89
38236269--38236989	143	5.0	143	91	4	1166	32	9	29	28	1.89
38237108--38237186	37	2.1	37	90	0	122	24	18	31	25	1.98
38240767--38240842	40	1.9	40	84	10	102	23	14	27	34	1.94
38240865--38240935	28	2.5	28	79	0	79	28	8	30	32	1.87
38253159--38253185	11	2.5	11	100	0	54	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38255451--38255600	39	3.8	39	92	1	248	30	29	21	19	1.97
38255940--38256152	110	1.9	110	97	0	399	24	20	8	46	1.78
38260644--38260691	25	1.9	25	86	0	69	35	22	14	27	1.93
38260728--38260794	20	3.3	20	91	0	107	32	11	22	32	1.90
38260845--38260962	23	5.1	23	92	3	193	27	20	21	30	1.98
38261177--38261240	31	2.1	31	87	0	92	37	15	21	25	1.93
38266660--38266807	70	2.1	70	90	3	228	30	28	17	23	1.97
38266728--38266935	104	2.0	101	92	4	346	31	29	20	18	1.96
38267070--38267108	10	3.9	10	83	12	53	56	15	0	28	1.40
38273006--38273176	27	6.3	27	84	4	193	30	28	14	26	1.95
38273006--38273176	55	3.2	54	83	4	202	30	28	14	26	1.95
38273026--38273176	82	1.9	81	87	4	223	29	28	14	27	1.95
38283029--38283089	26	2.3	27	80	11	72	47	8	0	44	1.33
38285325--38285418	42	2.2	42	94	0	161	35	34	14	15	1.89
38292602--38292681	40	2.0	41	87	9	119	18	22	42	16	1.89
38292800--38292860	21	3.0	21	95	2	106	13	39	26	21	1.90
38296067--38296092	12	2.2	12	100	0	52	50	0	19	30	1.48
38303137--38303190	18	2.8	19	74	15	58	62	5	0	31	1.18
38303147--38303417	141	1.9	137	80	8	305	58	4	2	34	1.31
38305190--38305224	18	1.9	19	88	11	56	40	25	11	22	1.88
38311676--38311766	25	3.6	25	82	5	103	24	19	24	31	1.98
38312408--38312451	20	2.2	20	84	8	54	59	4	15	20	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38312843--38312881	20	2.0	20	90	10	62	12	5	30	51	1.62
38315228--38315403	46	3.8	46	79	12	216	20	21	29	28	1.98
38315225--38315396	93	1.8	93	96	0	317	20	21	29	27	1.98
38324379--38324436	24	2.4	24	80	8	64	63	12	5	18	1.46
38326291--38326460	43	4.0	43	77	9	134	34	24	15	25	1.95
38332884--38332960	38	2.0	38	97	0	145	40	2	10	46	1.52
38333190--38333470	64	4.3	63	79	8	258	29	16	30	23	1.96
38335703--38335861	42	3.6	42	76	12	149	25	25	20	28	1.99
38335741--38335953	48	4.6	48	74	10	174	27	24	19	29	1.98
38335696--38335908	90	2.4	90	83	0	255	27	25	19	27	1.99
38335789--38335879	42	2.2	42	81	0	101	29	27	17	25	1.97
38348346--38348561	40	5.4	40	97	1	380	22	21	28	28	1.99
38353772--38353941	47	3.6	47	87	0	232	29	13	22	34	1.93
38357239--38357285	15	3.1	15	87	0	67	14	14	17	53	1.74
38359955--38360243	38	6.8	40	68	20	178	31	12	24	31	1.92
38360037--38360241	85	2.4	85	92	0	329	30	12	24	32	1.93
38364052--38364229	49	3.7	49	84	5	193	26	28	16	28	1.97
38364051--38364407	46	7.6	46	77	10	185	23	28	18	29	1.98
38369564--38369748	79	2.3	82	83	7	229	25	27	22	24	2.00
38369564--38369748	40	4.7	40	81	10	209	25	27	22	24	2.00
38370873--38371048	56	3.1	56	99	0	343	22	23	9	44	1.81
38376605--38376644	21	1.9	21	85	10	55	50	10	7	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38378384--38378554	44	3.6	47	74	9	134	26	27	18	27	1.98
38388674--38388719	22	2.1	22	87	0	65	32	28	21	17	1.96
38389245--38389501	124	2.1	124	98	0	496	26	29	22	21	1.99
38394668--38394737	25	2.8	25	93	0	113	27	25	22	24	2.00
38394667--38394762	25	3.9	24	81	9	95	28	23	22	25	2.00
38394668--38394762	50	1.9	50	80	8	113	28	24	23	24	2.00
38402324--38402362	10	3.8	10	90	6	60	35	17	15	30	1.91
38402323--38402362	21	1.9	21	94	0	71	37	17	15	30	1.90
38402407--38402476	25	2.8	25	84	0	77	25	22	22	28	1.99
38402432--38402489	25	2.4	25	76	21	61	29	18	24	27	1.98
38404555--38404726	93	1.8	93	93	0	299	28	29	20	21	1.98
38404548--38404723	46	3.8	46	78	12	198	29	28	20	21	1.98
38408240--38408417	40	4.5	40	90	3	254	27	26	21	23	1.99
38416201--38416362	40	4.1	40	91	0	245	29	27	20	23	1.99
38419238--38419270	16	2.1	16	100	0	66	12	12	12	63	1.52
38419588--38419795	53	3.9	54	80	4	213	23	24	16	35	1.95
38419599--38419785	55	3.5	54	80	9	186	22	24	17	35	1.95
38419823--38419931	48	2.3	48	96	0	200	17	19	22	40	1.91
38422111--38422143	16	2.1	16	88	5	50	12	33	30	24	1.91
38422998--38423158	49	3.3	49	76	7	157	21	28	21	28	1.99
38423852--38423902	20	2.7	18	82	14	59	37	21	0	41	1.54
38425984--38426008	13	1.9	13	100	0	50	12	0	56	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38444516--38444690	40	4.4	40	92	0	287	29	29	18	21	1.97
38452990--38453160	40	4.4	40	91	2	278	29	29	18	21	1.97
38460373--38460575	53	3.8	53	77	7	212	35	18	25	20	1.95
38460380--38460579	108	1.8	109	87	3	296	35	18	25	21	1.96
38460817--38460847	16	1.9	16	93	0	53	41	0	22	35	1.54
38466344--38466593	68	3.8	66	75	10	228	32	14	28	24	1.95
38468885--38469061	40	4.4	40	81	4	189	24	21	27	27	1.99
38468885--38469061	80	2.2	80	85	5	225	24	21	27	27	1.99
38472826--38472904	39	2.0	39	100	0	158	25	20	6	48	1.73
38475212--38475242	5	6.0	5	96	3	53	19	0	0	80	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343