Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  308  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100124640--100124679
19
2.1
19
100
0
80
25
10
15
50
1.74
100130985--100131021
5
7.4
5
88
11
58
16
2
0
81
0.81
100135435--100135474
5
8.0
5
89
10
64
17
2
0
80
0.83
100139163--100139200
20
1.9
20
84
10
51
39
5
2
52
1.38
100144051--100144081
11
2.8
11
95
0
53
38
6
41
12
1.69
100156324--100156375
26
2.0
26
100
0
104
46
15
3
34
1.64
100156362--100156443
40
2.1
39
90
2
128
51
8
3
36
1.50
100158329--100158385
21
2.7
22
82
12
75
19
21
36
22
1.95
100158994--100159033
21
1.9
21
85
10
55
72
17
10
0
1.11
100166218--100166297
39
2.1
39
97
0
151
45
11
20
23
1.83
100166238--100166297
18
3.2
18
67
28
52
45
8
23
23
1.80
100170855--100170982
52
2.5
52
98
0
247
33
14
18
33
1.91
100180414--100180449
7
5.1
7
96
0
63
0
16
16
66
1.25
100182279--100182519
121
2.0
121
98
0
464
26
20
15
37
1.93
100186160--100186295
48
2.8
48
83
7
168
32
8
5
52
1.56
100187897--100187939
18
2.4
18
88
0
59
20
25
9
44
1.81
100191434--100191814
126
3.0
126
91
0
620
27
18
18
35
1.94
100192339--100192423
19
4.6
19
81
11
104
42
21
1
35
1.60
100192347--100192418
16
4.0
17
81
13
74
41
20
1
36
1.61
100192339--100192423
39
2.3
38
88
8
122
42
21
1
35
1.60
100193485--100193522
13
2.8
13
88
4
58
42
0
13
44
1.43
100193538--100193581
10
4.4
10
94
0
70
27
6
0
65
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100193542--100193595
20
2.7
19
83
8
72
22
7
3
66
1.33
100200575--100200626
7
7.3
7
75
12
52
28
3
0
67
1.08
100203196--100203382
99
1.9
100
87
2
277
29
13
24
32
1.93
100203566--100203617
10
5.1
10
78
2
50
25
5
1
67
1.23
100207686--100207723
14
2.7
14
91
0
58
42
7
13
36
1.73
100210645--100210694
24
2.1
24
88
0
73
14
0
16
70
1.18
100211445--100211497
22
2.4
22
81
15
65
52
7
0
39
1.30
100223003--100223046
22
2.0
22
81
0
52
27
0
2
70
0.99
100223081--100223163
40
2.1
40
81
4
96
65
1
3
30
1.17
100224496--100224544
23
2.1
23
96
0
89
22
6
4
67
1.30
100224972--100225025
28
2.0
28
85
3
74
64
3
3
27
1.27
100225089--100225136
20
2.4
21
82
10
64
68
6
2
22
1.23
100225127--100225164
18
2.2
18
85
4
51
71
2
0
26
1.00
100226599--100226631
17
1.9
17
93
0
57
33
24
9
33
1.87
100227861--100227934
7
10.0
7
82
5
67
36
0
1
62
1.04
100227868--100227936
8
9.0
8
87
6
99
34
0
1
63
1.03
100228544--100228607
7
9.0
7
75
3
56
46
26
3
23
1.67
100228541--100228591
15
3.5
15
78
5
59
47
29
1
21
1.62
100228821--100229067
41
6.0
41
89
1
345
19
24
23
32
1.98
100233185--100233211
14
1.9
14
100
0
54
25
0
0
74
0.83
100233187--100233230
22
2.0
21
87
12
63
34
0
0
65
0.93
100235981--100236063
31
2.7
31
79
9
98
34
3
10
50
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100236372--100236399
14
2.0
14
100
0
56
35
7
0
57
1.26
100237531--100237556
3
8.7
3
100
0
52
69
0
30
0
0.89
100238418--100238458
3
13.7
3
100
0
82
34
0
0
65
0.93
100238734--100238779
12
3.9
12
88
2
67
78
0
17
4
0.91
100238724--100238779
23
2.4
23
82
8
69
76
0
19
3
0.93
100238734--100238793
12
4.9
13
87
6
56
75
0
21
3
0.95
100238725--100238794
29
2.4
28
75
11
70
74
0
22
2
0.95
100238758--100238800
15
2.9
15
86
6
52
69
0
27
2
1.00
100239495--100239536
20
2.0
21
90
4
68
33
28
16
21
1.95
100240700--100240739
17
2.2
19
86
8
57
27
2
7
62
1.35
100240729--100241171
3
149.3
3
68
15
156
26
6
4
61
1.41
100240810--100240965
65
2.4
65
95
3
278
26
5
5
62
1.41
100240948--100241007
23
2.7
23
80
7
72
30
5
5
60
1.40
100241205--100241294
27
3.3
26
72
17
69
32
5
4
57
1.42
100241532--100241583
25
2.0
27
85
7
72
28
1
1
67
1.12
100245586--100245671
43
2.0
43
97
0
163
38
23
3
34
1.72
100247705--100247738
16
2.1
16
100
0
68
29
5
41
23
1.78
100251569--100251636
16
4.2
16
92
0
118
27
0
36
35
1.58
100251864--100252004
17
8.6
17
65
21
61
52
0
1
45
1.14
100251902--100251950
24
2.1
22
85
14
64
55
0
2
42
1.11
100251921--100251976
15
4.0
15
73
17
57
55
0
0
44
0.99
100251931--100251993
26
2.5
25
82
10
83
58
1
0
39
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100256168--100256241
26
2.9
25
72
7
69
54
1
1
43
1.17
100257490--100257612
42
2.9
42
77
9
126
17
35
25
21
1.95
100261393--100261424
15
2.1
15
100
0
64
34
18
9
37
1.83
100266871--100266904
15
2.2
16
90
10
54
52
14
0
32
1.42
100268119--100268214
50
2.0
48
91
4
156
40
3
3
53
1.33
100274238--100274291
5
10.8
5
97
0
81
20
12
20
46
1.83
100279052--100279103
19
2.6
19
74
17
52
50
3
34
11
1.57
100279674--100279727
22
2.5
22
84
0
63
55
3
0
40
1.17
100287953--100287983
14
2.2
14
100
0
62
25
16
6
51
1.68
100290890--100290914
7
3.6
7
100
0
50
0
12
0
88
0.53
100293737--100293873
60
2.3
59
82
8
161
29
19
23
27
1.98
100294705--100294737
18
1.9
17
88
11
50
42
12
15
30
1.83
100294883--100294940
29
2.0
29
96
0
107
53
10
8
27
1.64
100296129--100296174
8
5.8
8
78
0
56
47
19
23
8
1.77
100296133--100296176
16
2.8
16
100
0
88
40
20
27
11
1.86
100296789--100296834
20
2.3
21
82
14
62
26
17
28
28
1.98
100296864--100296975
27
3.9
28
70
22
79
29
20
24
25
1.99
100302871--100302926
27
2.1
27
93
0
94
30
14
8
46
1.75
100303827--100303928
47
2.2
47
96
1
188
57
8
5
27
1.52
100308252--100308328
39
2.0
39
94
0
136
20
16
27
35
1.95
100316677--100316732
9
6.2
9
97
0
85
41
26
10
21
1.86
100316677--100316732
18
3.1
18
94
0
94
41
26
10
21
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100318579--100318630
24
2.2
23
79
3
59
69
5
7
17
1.33
100328626--100328680
19
2.8
20
77
5
58
41
27
5
25
1.77
100328646--100328703
27
2.2
26
87
9
82
41
27
1
29
1.66
100328846--100328880
18
1.9
18
88
0
52
51
0
0
48
1.00
100329004--100329043
21
1.9
21
94
0
71
37
17
0
45
1.49
100328925--100329147
124
1.8
124
92
1
376
33
12
9
44
1.75
100331113--100331169
29
2.0
29
89
0
87
50
15
7
26
1.69
100334072--100334122
14
4.0
13
73
12
52
54
0
1
43
1.11
100336747--100336801
27
2.0
27
96
0
101
36
21
23
18
1.95
100345361--100345475
52
2.1
54
85
9
153
50
5
11
33
1.60
100349429--100349474
23
1.9
24
82
8
58
60
4
2
32
1.28
100349976--100350012
13
2.8
13
87
4
56
43
0
13
43
1.44
100350027--100350092
10
6.6
10
80
3
62
28
4
0
66
1.11
100350037--100350096
20
3.0
20
97
0
111
28
5
0
66
1.12
100351380--100351419
10
4.0
10
81
12
55
5
7
0
87
0.66
100351431--100351617
96
1.9
97
90
1
295
29
25
16
29
1.96
100352355--100352388
7
4.9
7
89
10
52
76
0
0
23
0.79
100352359--100352424
15
4.1
16
78
16
66
77
3
0
19
0.90
100352354--100352424
8
8.5
8
76
14
63
77
2
0
19
0.89
100353153--100353182
15
2.0
15
93
0
51
50
0
10
40
1.36
100360833--100360880
20
2.4
20
82
6
62
64
2
8
25
1.32
100360897--100360933
13
2.8
13
87
4
56
43
13
0
43
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100364447--100364518
19
3.9
18
71
16
58
63
1
2
31
1.17
100364852--100364888
16
2.2
18
90
9
60
81
0
0
18
0.70
100365004--100365208
9
21.6
9
67
15
76
30
3
3
61
1.31
100365004--100365093
47
1.9
46
82
13
112
26
4
5
63
1.36
100365078--100365161
10
8.5
10
68
24
54
35
3
1
59
1.22
100365068--100365161
21
4.8
20
77
15
72
34
3
2
60
1.24
100368854--100368899
9
5.1
9
83
0
56
52
8
6
32
1.58
100368854--100368891
18
2.1
18
95
0
67
52
7
5
34
1.53
100371217--100371248
10
3.3
10
95
4
57
31
6
0
62
1.20
100371963--100371998
17
2.0
19
89
10
58
27
13
5
52
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343