Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  331  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106118003--106118043
21
2.0
21
95
0
73
7
7
0
85
0.75
106117975--106118042
25
2.6
26
75
15
70
5
11
0
82
0.83
106117982--106118042
11
5.7
10
83
11
68
6
11
0
81
0.85
106118000--106118042
11
4.1
11
91
8
72
6
9
0
83
0.80
106124353--106124467
17
6.5
18
88
4
164
36
12
11
40
1.78
106124353--106124476
35
3.5
35
86
9
171
37
12
10
39
1.78
106124353--106124476
52
2.3
53
91
5
205
37
12
10
39
1.78
106131306--106131485
47
3.8
49
79
15
200
28
29
20
21
1.98
106131314--106131485
94
1.8
93
93
1
299
28
29
20
20
1.98
106131703--106131750
23
2.1
23
100
0
96
62
16
0
20
1.33
106131927--106131986
30
2.0
30
83
6
77
30
26
6
36
1.82
106135472--106135653
20
9.2
21
66
22
99
13
23
21
41
1.88
106135454--106135671
39
5.6
39
92
0
328
13
24
22
39
1.90
106137634--106138200
44
12.4
45
70
12
307
29
18
21
29
1.97
106137778--106138200
44
9.3
44
73
11
309
29
18
22
29
1.98
106137818--106138200
183
2.1
181
79
8
393
29
18
22
29
1.98
106137958--106138200
43
5.4
43
73
11
193
28
18
22
30
1.98
106137814--106138169
139
2.5
139
86
1
453
30
19
22
28
1.98
106138249--106138372
41
2.9
44
78
9
130
33
21
17
26
1.96
106138287--106138473
101
1.9
101
86
2
268
34
19
20
26
1.96
106138542--106139424
44
19.6
44
67
15
276
32
17
21
28
1.96
106138388--106139487
181
6.1
181
86
3
1429
32
17
21
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106139038--106139335
92
3.3
91
70
15
247
32
18
20
28
1.96
106138388--106139443
543
1.9
545
88
1
1580
32
17
21
29
1.96
106140533--106140679
31
4.7
31
92
1
224
25
26
19
27
1.99
106140657--106140830
50
3.5
50
85
2
224
27
21
14
36
1.93
106143018--106143051
10
3.5
10
96
4
61
58
32
0
8
1.29
106146896--106147020
32
3.9
32
94
0
223
37
21
6
34
1.79
106146896--106147024
64
2.0
64
100
0
258
37
21
6
34
1.79
106147338--106147465
3
42.0
3
72
14
77
26
7
1
64
1.28
106147338--106147452
30
4.0
29
72
14
103
26
6
0
66
1.23
106148533--106148596
26
2.5
26
76
0
74
32
7
23
35
1.84
106149350--106149519
86
2.0
86
91
4
281
47
5
14
32
1.66
106155147--106155187
21
2.0
21
90
0
64
29
21
29
19
1.98
106163025--106163090
12
5.8
12
74
13
50
36
4
1
57
1.28
106163343--106163391
23
2.2
22
85
3
62
32
4
4
59
1.35
106163360--106163405
23
2.0
23
87
8
67
32
0
4
63
1.14
106163508--106163541
16
2.1
16
94
0
59
35
0
0
64
0.94
106163443--106163622
86
2.1
89
80
9
201
36
3
5
55
1.40
106163715--106163867
25
6.1
25
76
14
129
32
7
4
55
1.48
106165194--106165231
20
1.9
20
100
0
76
44
15
7
31
1.75
106168944--106168979
17
2.1
18
89
5
56
36
0
33
30
1.58
106186845--106186910
23
2.7
25
76
9
73
39
1
4
54
1.30
106186896--106186953
20
2.8
19
80
14
62
39
0
1
58
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106186903--106186994
21
4.2
21
77
14
96
45
0
0
54
0.99
106186935--106187025
29
3.4
28
76
13
109
51
0
0
48
1.00
106186933--106187034
52
2.0
52
90
3
161
49
0
1
48
1.19
106187101--106187174
38
1.9
38
94
5
132
43
5
21
29
1.75
106192865--106192927
23
2.8
22
73
22
67
57
6
0
36
1.24
106193393--106193454
21
3.0
22
77
15
69
35
46
0
17
1.49
106193518--106193602
21
3.9
21
72
17
73
45
23
1
29
1.60
106193502--106193595
46
2.0
46
89
4
145
43
23
2
30
1.65
106193767--106193934
41
4.1
40
85
4
169
16
19
23
40
1.91
106197165--106197215
19
2.9
17
81
13
59
37
9
17
35
1.83
106197175--106197217
19
2.1
21
91
8
72
37
9
18
34
1.83
106198155--106198352
92
2.2
92
90
0
306
25
15
25
33
1.95
106198247--106198615
131
2.8
132
94
0
641
24
16
25
33
1.96
106198933--106198970
15
2.4
16
86
4
51
18
0
28
52
1.45
106198910--106198987
37
2.1
37
83
9
97
16
0
30
52
1.44
106198933--106198972
16
2.6
15
88
4
53
17
0
27
55
1.43
106198949--106198997
22
2.2
21
82
10
62
18
0
28
53
1.45
106198960--106199003
22
2.0
22
90
0
70
13
0
36
50
1.42
106199617--106199883
47
5.7
47
95
0
462
35
16
14
33
1.90
106202828--106203019
36
5.3
36
80
9
221
23
23
15
37
1.93
106202828--106203019
73
2.6
73
85
3
269
23
23
15
37
1.93
106203038--106203063
12
2.2
12
100
0
52
7
15
30
46
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106203087--106203255
41
4.1
40
92
3
221
33
21
21
22
1.97
106203087--106203255
81
2.1
83
86
4
236
33
21
21
22
1.97
106204029--106204111
14
5.8
14
73
9
69
49
21
3
25
1.66
106204029--106204111
29
2.9
28
83
3
85
49
21
3
25
1.66
106204610--106204675
7
9.0
7
80
9
60
74
1
0
24
0.91
106204583--106204678
8
11.9
8
73
16
56
70
2
0
27
0.98
106204608--106204674
22
3.0
22
84
2
80
76
1
0
22
0.87
106204595--106204674
15
5.1
15
80
11
90
73
2
0
23
0.95
106204608--106204685
30
2.6
30
83
0
102
71
1
0
26
0.93
106206601--106206641
16
2.9
15
86
13
52
80
2
17
0
0.82
106209279--106209326
20
2.4
21
82
10
64
22
2
6
68
1.23
106209740--106209827
38
2.4
36
83
12
108
25
19
15
39
1.91
106210967--106211401
142
3.0
143
94
1
755
39
15
19
25
1.91
106211983--106212185
84
2.4
84
81
4
205
43
11
12
32
1.78
106212020--106212185
84
2.0
84
86
0
233
44
10
13
31
1.78
106216830--106216869
21
1.9
21
100
0
80
27
5
0
67
1.11
106216807--106216863
26
2.1
27
84
9
73
31
1
1
64
1.13
106218816--106218943
37
3.3
36
68
14
103
32
25
21
21
1.98
106220489--106220545
30
1.9
30
89
3
89
24
28
22
24
2.00
106220499--106220559
30
2.1
30
87
3
88
21
31
19
27
1.97
106226543--106226707
78
2.1
78
82
5
199
31
27
19
21
1.97
106226822--106226880
28
2.1
29
81
15
70
37
18
5
38
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106227716--106227758
20
2.2
18
80
15
50
20
9
0
69
1.15
106228210--106228270
30
2.1
29
87
3
86
26
31
16
26
1.96
106229428--106229480
27
2.0
27
85
7
72
58
13
1
26
1.45
106229524--106229563
11
3.6
11
79
0
53
60
7
10
22
1.54
106241988--106242053
21
3.2
20
81
12
73
31
4
0
63
1.14
106251842--106251896
22
2.5
22
77
14
58
60
3
5
30
1.37
106252148--106252203
25
2.3
24
81
6
60
51
7
1
39
1.40
106252191--106252230
18
2.3
17
86
4
53
55
0
0
45
0.99
106253422--106253483
31
2.0
31
100
0
124
29
9
22
38
1.86
106254529--106254582
22
2.3
23
79
14
67
38
1
0
59
1.08
106259229--106259254
12
2.2
12
100
0
52
7
15
30
46
1.74
106259309--106259445
41
3.4
40
88
4
202
35
20
24
19
1.96
106259793--106259842
21
2.5
20
80
6
64
32
2
30
36
1.69
106259794--106259836
21
2.0
21
90
0
68
30
2
32
34
1.71
106260148--106260200
26
2.0
26
96
0
97
20
47
0
32
1.51
106260151--106260199
15
3.5
15
68
21
52
18
51
0
30
1.47
106263120--106263671
183
3.0
183
97
0
1041
27
15
15
42
1.86
106263872--106263900
15
1.9
15
100
0
58
24
6
20
48
1.74
106264162--106266080
274
7.0
274
98
0
3645
35
12
11
39
1.81
106264162--106266080
546
3.5
546
97
0
3646
35
12
11
39
1.81
106266008--106266170
71
2.3
71
95
2
292
28
6
4
60
1.40
106266298--106266327
15
2.0
15
100
0
60
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106266433--106266602
9
18.4
9
73
13
78
46
11
1
40
1.48
106266439--106266593
26
6.0
26
69
12
86
46
11
1
40
1.48
106266464--106266616
52
2.7
58
75
13
167
45
12
0
41
1.46
106266432--106266566
43
3.1
43
74
17
143
45
11
1
41
1.48
106272515--106272581
31
2.2
31
83
0
80
17
4
17
59
1.53
106272655--106272990
43
7.8
43
94
1
575
23
33
18
25
1.97
106274932--106274988
26
2.1
27
84
9
73
31
1
1
64
1.13
106275818--106275852
17
2.1
18
89
10
56
34
5
2
57
1.37
106284257--106284429
93
1.9
93
92
0
292
28
31
20
19
1.97
106284250--106284425
46
3.8
46
79
10
196
29
30
20
19
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343