Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A10
Parameters: 2 7 7 80 10 50 1000
Length:  110302803

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   

This is table  334  of  343  ( 41150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106929913--106929964
16
3.2
16
76
13
52
59
1
25
13
1.44
106935284--106935317
6
5.7
6
92
0
50
44
35
0
20
1.52
106942040--106942073
17
2.0
17
94
0
59
44
50
0
5
1.26
106946669--106946702
17
2.0
17
94
0
59
44
50
0
5
1.26
106948158--106948292
39
3.4
39
74
11
116
28
27
20
23
1.99
106949861--106949896
5
7.0
5
93
6
63
61
0
0
38
0.96
106956684--106956776
18
5.2
18
85
0
123
33
15
22
29
1.94
106956682--106956776
36
2.6
36
88
0
145
32
15
22
29
1.95
106960365--106960406
22
1.9
22
85
0
57
33
7
9
50
1.62
106968449--106968512
31
2.1
31
85
11
87
39
0
9
51
1.34
106970015--106970062
24
1.9
26
83
8
64
37
43
2
16
1.60
106971875--106971930
21
2.7
20
78
8
67
28
16
21
33
1.95
106973218--106973287
35
2.0
35
97
2
133
40
8
14
37
1.76
106980326--106980381
26
2.1
26
83
3
67
64
12
12
10
1.51
106985457--106985502
15
2.9
15
83
6
56
71
2
0
26
0.97
106999061--106999106
15
3.0
15
77
3
56
60
0
0
39
0.97
106999058--106999109
15
3.5
14
72
12
50
65
0
0
34
0.93
107003730--107003766
18
2.1
18
89
0
56
45
2
2
48
1.30
107005245--107005318
37
2.0
38
91
2
123
29
47
1
21
1.59
107005303--107005338
18
2.0
18
94
0
63
25
58
0
16
1.38
107005408--107005446
11
3.4
11
85
7
51
28
0
30
41
1.57
107005651--107005767
60
2.0
61
83
10
152
25
5
6
62
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107009854--107009898
21
2.1
21
84
8
56
42
20
20
17
1.90
107012420--107012465
13
3.5
13
82
11
58
71
0
28
0
0.86
107012426--107012496
18
3.8
19
77
7
67
74
0
23
1
0.90
107012412--107012465
26
2.1
26
85
0
72
74
0
25
0
0.83
107012424--107012486
31
1.9
34
81
15
80
73
0
25
1
0.93
107013848--107014235
90
4.3
90
76
10
407
27
22
23
26
1.99
107013767--107014304
46
12.0
46
64
19
176
29
21
23
26
1.99
107013755--107014146
179
2.2
179
88
2
608
29
21
23
24
1.99
107013843--107014687
133
6.3
135
79
8
871
29
21
22
26
1.99
107014901--107014964
29
2.2
29
86
5
94
31
51
1
15
1.53
107014930--107015004
37
2.0
37
97
0
141
28
54
1
16
1.50
107014946--107015018
18
4.0
18
71
16
69
26
56
1
16
1.49
107015320--107015436
60
2.0
61
83
10
152
25
5
6
62
1.41
107017874--107017912
16
2.4
17
83
8
55
5
10
38
46
1.60
107019433--107019486
25
2.2
25
86
6
74
61
1
1
35
1.18
107019455--107019494
19
2.2
18
86
4
53
60
0
7
32
1.25
107021082--107021120
15
2.6
15
84
8
53
69
0
2
28
1.02
107026097--107026149
23
2.2
23
83
6
61
39
0
0
60
0.97
107028624--107028659
6
6.0
6
93
0
54
77
0
0
22
0.76
107028628--107028660
16
2.0
17
88
5
50
75
0
0
24
0.80
107029144--107029190
25
1.9
25
86
4
69
46
6
4
42
1.48
107041330--107041490
51
3.2
51
94
0
268
29
22
14
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107045279--107045338
18
3.3
18
79
9
68
31
15
10
43
1.79
107051265--107051299
3
11.7
3
100
0
70
34
0
0
65
0.93
107051620--107051686
34
2.0
34
91
5
109
28
20
16
34
1.95
107066477--107066528
11
4.7
11
73
0
50
23
13
7
55
1.63
107066480--107066528
22
2.2
22
81
0
62
22
12
8
57
1.61
107067032--107067065
2
17.0
2
100
0
68
50
0
0
50
1.00
107067538--107067597
10
6.3
9
71
17
50
28
1
3
66
1.17
107067512--107067583
29
2.5
29
81
4
74
27
2
5
63
1.30
107067537--107067614
20
4.0
20
78
9
70
25
2
5
66
1.25
107067532--107067633
48
2.1
49
81
5
118
28
2
4
63
1.29
107067723--107067788
31
2.1
31
83
10
82
42
16
18
22
1.89
107073200--107073258
10
5.9
10
84
7
84
20
10
1
67
1.28
107077241--107077376
60
2.3
59
82
8
159
27
19
26
25
1.99
107080227--107080296
13
5.3
13
69
16
54
21
5
0
72
1.05
107080223--107080286
13
4.2
15
77
20
62
21
4
0
73
1.01
107080227--107080269
18
2.4
18
88
7
61
20
2
0
76
0.89
107080225--107080296
28
2.7
28
87
6
96
20
5
0
73
1.03
107080223--107080296
25
3.2
23
84
7
89
21
5
0
72
1.04
107081612--107081637
11
2.4
11
100
0
52
92
0
7
0
0.39
107082267--107082325
10
5.9
10
84
7
84
20
10
1
67
1.28
107089100--107089700
111
5.4
111
87
6
867
37
16
14
32
1.89
107089100--107089700
112
5.4
111
88
6
867
37
16
14
32
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107090216--107090258
21
2.0
21
100
0
86
27
4
0
67
1.10
107092565--107093101
112
4.8
112
89
5
710
32
14
15
37
1.88
107093054--107093133
35
2.2
36
88
2
117
32
7
8
51
1.61
107105263--107105296
17
2.0
17
94
0
59
44
50
0
5
1.26
107109892--107109925
17
2.0
17
94
0
59
44
50
0
5
1.26
107112795--107112853
29
2.0
29
90
0
91
25
6
8
59
1.51
107117052--107117084
16
2.1
16
100
0
66
12
27
42
18
1.85
107117058--107117093
16
2.2
16
90
0
54
19
22
41
16
1.90
107130552--107130596
19
2.5
19
82
7
58
51
2
0
46
1.13
107130568--107130606
15
2.7
14
80
7
51
46
5
2
46
1.38
107131402--107131918
256
2.0
258
91
0
849
34
16
12
37
1.86
107133109--107133134
13
2.0
13
100
0
52
61
0
0
38
0.96
107135534--107135578
19
2.3
20
85
11
58
37
2
0
60
1.09
107137214--107137252
12
3.3
12
82
3
53
25
28
23
23
1.99
107141257--107141314
25
2.4
24
78
13
66
43
8
8
39
1.66
107145763--107145802
3
13.3
3
94
0
62
62
0
5
32
1.17
107147164--107147202
15
2.7
15
92
4
62
71
0
0
28
0.86
107147164--107147201
7
5.3
7
82
17
51
71
0
0
28
0.87
107148154--107148194
21
2.0
21
85
9
57
29
24
4
41
1.75
107149813--107149868
24
2.3
24
76
11
60
44
1
0
53
1.11
107151007--107151069
30
2.1
30
96
0
117
57
12
3
26
1.51
107152509--107152564
27
2.1
26
80
9
60
48
8
3
39
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107153895--107153922
4
7.0
4
100
0
56
25
0
25
50
1.50
107166554--107166595
17
2.3
19
88
8
61
40
0
4
54
1.21
107167200--107167249
18
2.7
19
81
12
59
36
2
0
62
1.07
107172806--107172850
23
2.0
23
86
8
65
55
2
0
42
1.12
107175469--107175512
23
1.9
23
86
9
63
59
0
9
31
1.29
107175514--107175549
18
2.0
19
89
10
58
50
0
2
47
1.15
107177492--107177545
22
2.5
22
79
5
58
66
5
0
27
1.13
107178858--107178884
2
13.5
2
100
0
54
51
0
0
48
1.00
107182673--107182708
18
2.0
18
100
0
72
33
16
11
38
1.84
107184280--107184312
16
2.1
16
94
0
57
0
3
12
84
0.72
107188197--107188226
15
2.0
15
100
0
60
40
6
0
53
1.27
107193267--107193407
70
2.0
70
98
0
273
31
21
7
38
1.82
107195937--107195977
12
3.2
13
81
18
50
65
2
4
26
1.25
107196053--107196086
18
1.9
18
88
5
52
26
5
0
67
1.13
107198860--107198893
9
4.0
8
85
14
50
73
0
0
26
0.83
107203314--107203475
80
2.0
80
100
0
324
33
21
18
26
1.96
107236097--107236127
16
1.9
16
93
0
53
54
3
0
41
1.16
107241030--107241094
24
2.6
24
76
13
69
30
0
3
66
1.07
107242544--107242590
23
2.0
23
100
0
94
40
4
25
29
1.75
107243815--107243860
21
2.1
23
88
8
69
28
2
4
65
1.23
107244755--107244792
19
2.0
19
89
0
58
52
5
0
42
1.24
107245978--107246217
131
1.8
133
84
3
333
28
15
16
39
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107246267--107246298
4
8.0
4
100
0
64
25
0
25
50
1.50
107253859--107253937
38
2.1
38
95
0
140
54
10
8
26
1.63
107254848--107254892
18
2.7
17
77
22
51
53
0
0
46
1.00
107257257--107257413
53
2.9
53
82
6
167
33
17
11
37
1.85
107258259--107258299
21
2.0
21
85
4
57
26
4
4
63
1.35
107258343--107258387
18
2.7
17
77
22
51
53
0
0
46
1.00
107259300--107259337
19
2.0
19
85
10
51
71
0
5
23
1.07
107266780--107266931
60
2.6
57
84
5
153
44
19
13
22
1.85
107271148--107271186
20
2.0
19
85
5
51
33
7
15
43
1.75
107282853--107283101
50
4.8
50
85
4
284
20
29
24
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343