genome.fa.s8.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  108  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411957--35412009	26	2.1	25	89	3	79	28	22	16	32	1.96
35412305--35412349	20	2.3	20	88	3	65	28	15	26	28	1.96
35412373--35412514	61	2.3	61	83	8	173	27	19	25	27	1.99
35416733--35416835	40	2.6	40	90	0	152	24	23	27	25	2.00
35420316--35420382	32	2.1	32	97	0	125	35	11	11	40	1.79
35421523--35421552	9	3.3	9	100	0	60	46	0	0	53	1.00
35426604--35426663	29	2.1	28	84	3	75	31	26	0	41	1.56
35428684--35428743	29	2.1	28	84	3	75	31	26	0	41	1.56
35429442--35429481	20	2.1	19	85	4	53	40	7	5	47	1.54
35444641--35444729	45	2.0	45	100	0	178	34	8	22	33	1.86
35447124--35447163	18	2.4	16	80	15	53	7	17	0	75	1.03
35447111--35447158	23	2.1	22	81	11	53	8	16	0	75	1.04
35454962--35455116	39	4.0	39	93	0	256	25	20	27	27	1.99
35459424--35459480	30	1.9	30	92	0	96	33	14	24	28	1.94
35459822--35460187	47	7.8	45	78	9	297	28	21	27	22	1.99
35459870--35460187	95	3.3	93	76	9	279	28	21	27	21	1.99
35459822--35460170	142	2.5	138	82	9	393	29	20	27	22	1.99
35461020--35461054	13	2.7	13	100	0	70	22	31	37	8	1.85
35460965--35461092	68	1.9	68	88	0	193	20	22	31	25	1.98
35464393--35464498	26	4.2	25	85	9	144	33	7	22	36	1.83
35465984--35466033	26	1.9	26	84	8	66	40	22	14	24	1.90
35482268--35482293	13	2.0	13	100	0	52	7	0	30	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35487381--35487528	42	3.5	42	79	7	165	29	17	22	29	1.97
35491607--35491632	6	4.3	6	100	0	52	34	0	50	15	1.45
35496478--35496578	40	2.5	40	93	1	168	24	23	25	25	2.00
35498986--35499069	38	2.2	38	89	0	123	23	25	26	25	2.00
35499083--35499247	43	3.8	43	93	0	276	10	27	31	30	1.91
35499221--35499253	16	2.1	16	100	0	66	12	36	27	24	1.91
35504483--35504519	2	19.0	2	94	5	67	0	51	0	48	1.00
35512912--35513191	39	7.1	37	85	6	274	24	27	22	25	2.00
35512931--35513192	78	3.3	79	87	4	352	24	27	22	24	2.00
35515613--35515884	50	5.6	47	77	10	208	28	19	26	25	1.99
35521771--35521795	13	1.9	13	100	0	50	88	4	8	0	0.64
35522877--35523140	40	6.7	40	89	4	349	25	22	27	25	2.00
35522878--35523173	80	3.7	77	82	10	289	26	21	27	24	2.00
35530809--35531031	39	5.7	40	84	8	257	26	22	26	24	2.00
35530809--35531031	79	2.8	81	83	9	273	26	22	26	24	2.00
35530861--35531064	79	2.6	79	83	8	204	26	21	27	25	1.99
35533678--35534013	172	2.0	171	98	1	647	30	8	18	42	1.80
35535986--35536024	16	2.5	16	91	4	62	61	0	10	28	1.28
35556561--35556889	48	6.8	48	86	1	417	27	28	17	26	1.98
35560543--35561295	378	2.0	377	94	0	1335	32	22	19	25	1.98
35562362--35562469	43	2.5	43	74	5	112	30	22	16	30	1.96
35565976--35566157	28	6.5	28	95	0	312	25	12	28	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35574141--35574322	28	6.5	28	96	0	303	26	12	28	32	1.93
35584583--35584610	14	2.0	14	100	0	56	35	0	7	57	1.26
35585976--35586034	31	2.0	28	87	9	82	61	1	1	35	1.16
35593216--35593431	46	4.7	46	76	13	158	29	20	29	21	1.98
35593666--35593701	17	2.1	17	100	0	72	36	22	5	36	1.78
35608478--35608535	30	1.9	30	89	0	89	34	10	25	29	1.89
35610361--35610552	40	4.8	40	88	1	172	27	27	20	24	1.99
35610341--35610551	80	2.6	81	79	5	223	28	27	20	23	1.99
35614478--35614642	46	3.5	48	79	13	175	27	16	30	24	1.97
35618451--35618535	29	2.9	29	100	0	170	23	17	30	28	1.97
35618962--35619002	20	2.0	20	100	0	82	14	29	12	43	1.82
35629370--35629513	27	5.3	27	87	6	191	27	13	27	31	1.94
35629370--35629513	55	2.6	55	91	0	225	27	13	27	31	1.94
35637409--35637614	27	7.5	28	91	3	314	26	13	28	31	1.94
35637409--35637614	55	3.8	55	95	0	342	26	13	28	31	1.94
35641113--35641168	25	2.2	26	80	6	60	60	3	5	30	1.36
35641768--35641802	18	1.9	18	88	0	52	37	5	5	51	1.50
35656980--35657011	16	2.0	16	93	0	55	53	0	9	37	1.34
35661944--35661999	25	2.2	26	79	17	73	62	1	1	33	1.16
35662108--35662149	21	2.0	20	86	13	59	21	9	47	21	1.79
35666909--35667131	39	5.7	40	85	8	266	25	22	27	24	2.00
35666909--35667131	79	2.8	81	84	9	282	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35666909--35667164	79	3.3	79	81	10	217	26	21	27	24	1.99
35674848--35675070	39	5.7	40	85	8	266	26	21	27	24	2.00
35674848--35675070	79	2.8	81	84	9	282	26	21	27	24	2.00
35690738--35690796	24	2.3	26	80	5	68	54	0	5	40	1.23
35690822--35690857	16	2.2	16	90	0	54	69	0	2	27	1.02
35693323--35693363	18	2.2	20	82	8	50	46	19	9	24	1.80
35694800--35694837	19	2.0	19	100	0	76	31	26	10	31	1.90
35702320--35702377	15	3.9	15	72	0	53	12	13	17	56	1.66
35705091--35705219	46	2.8	46	88	2	188	19	18	29	32	1.96
35719438--35719591	75	2.1	75	94	0	272	35	25	1	37	1.64
35723589--35723667	37	2.1	37	88	4	115	25	30	18	25	1.98
35723786--35724229	47	9.4	47	92	1	699	28	29	9	33	1.88
35723786--35724229	190	2.4	189	91	1	721	28	29	9	33	1.88
35729445--35729706	54	4.9	54	84	3	312	23	23	16	35	1.95
35730493--35730553	30	2.0	30	87	0	86	34	21	8	36	1.83
35734452--35734655	48	4.5	47	78	6	181	27	13	24	34	1.93
35736123--35736156	18	1.9	18	88	5	52	41	0	20	38	1.53
35740926--35741106	48	3.9	47	79	4	172	28	13	23	34	1.93
35757961--35758154	40	4.9	40	90	0	300	25	24	27	22	2.00
35757961--35758181	80	2.8	80	87	2	313	26	24	27	21	1.99
35761612--35762696	542	2.0	542	91	0	1758	28	16	24	30	1.97
35766562--35766755	40	4.9	40	88	0	282	26	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35769905--35769933	14	2.1	14	100	0	58	20	17	27	34	1.95
35781992--35782050	30	2.0	30	93	0	100	54	13	3	28	1.55
35782613--35782661	6	7.6	7	93	6	54	53	0	0	46	1.00
35782619--35782663	6	7.3	6	97	2	81	48	0	0	51	1.00
35783787--35783844	31	1.9	31	82	6	75	43	10	5	41	1.61
35786216--35786274	31	1.9	31	89	0	91	33	27	11	27	1.92
35786239--35786452	60	3.7	61	74	15	189	31	24	12	31	1.92
35786261--35786368	54	2.0	54	85	3	146	31	25	13	29	1.94
35787820--35787954	56	2.4	56	92	2	218	30	16	23	29	1.96
35787820--35787985	56	3.0	56	85	8	180	30	16	23	30	1.96
35790138--35790246	37	2.9	37	94	0	182	27	31	18	22	1.97
35790306--35790440	50	2.7	50	95	0	234	32	25	5	37	1.78
35790474--35790624	70	2.1	70	95	2	266	27	29	10	32	1.90
35790474--35790626	23	6.5	23	69	20	102	28	28	10	32	1.90
35790411--35790553	47	3.1	47	88	4	195	26	30	11	32	1.91
35798135--35798192	26	2.2	26	96	0	107	39	0	20	39	1.53
35798826--35798989	56	2.9	56	87	1	222	26	15	26	31	1.96
35800032--35800203	85	2.0	85	97	0	326	32	4	22	41	1.72
35805394--35805675	96	2.9	96	79	1	278	25	28	17	28	1.98
35805393--35805725	144	2.3	144	83	3	404	25	27	18	28	1.98
35805393--35805712	48	6.7	48	76	2	221	25	27	18	29	1.98
35808593--35808689	38	2.6	38	89	0	149	30	19	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35811868--35811902	17	2.1	17	100	0	70	31	5	17	45	1.71
35811874--35811911	17	2.2	17	90	0	58	28	7	18	44	1.78
35812899--35813060	43	3.8	43	77	11	152	24	17	27	30	1.97
35821661--35821726	34	1.9	34	90	6	107	25	24	24	25	2.00
35824114--35824416	40	7.6	40	89	2	396	27	28	20	24	1.99
35832104--35832406	40	7.6	40	89	2	396	27	28	20	24	1.99
35842260--35842387	64	2.0	64	96	0	238	29	28	20	21	1.98
35843009--35843061	27	2.0	27	88	0	79	33	15	16	33	1.90
35843291--35843333	16	2.7	16	100	0	86	20	32	30	16	1.95
35850783--35850839	20	2.8	20	81	2	69	22	14	35	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373