Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  329  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110490021--110490063
21
2.0
21
81
0
50
13
4
2
79
1.00
110495425--110495472
5
9.6
5
95
0
87
43
0
0
56
0.99
110495798--110495831
9
3.7
9
88
7
50
38
0
2
58
1.13
110495913--110495947
4
8.2
4
87
12
52
74
0
25
0
0.82
110495855--110495949
18
5.2
17
74
13
66
68
3
25
3
1.19
110496335--110496386
11
4.5
11
81
11
50
57
0
13
28
1.36
110496340--110496380
12
3.5
11
90
6
55
56
0
17
26
1.41
110497060--110497151
44
2.1
44
85
4
123
20
19
23
35
1.95
110497140--110497240
47
2.2
46
82
7
114
21
20
23
33
1.97
110497330--110497432
48
2.1
48
83
0
125
39
7
15
36
1.76
110499460--110499506
24
1.9
25
86
4
69
57
0
8
34
1.29
110499948--110500010
30
2.1
30
96
0
117
15
41
22
20
1.90
110504669--110504712
22
2.0
22
95
0
79
25
36
4
34
1.76
110509263--110509316
21
2.5
22
75
3
56
20
35
29
14
1.93
110524365--110524406
14
3.1
14
86
3
59
33
0
2
64
1.07
110527573--110527637
33
2.0
33
90
0
103
21
10
32
35
1.88
110527620--110527715
16
5.9
16
70
18
72
22
9
33
34
1.87
110527583--110527712
33
3.9
33
74
11
97
23
10
31
34
1.88
110531568--110531606
20
1.9
21
94
5
71
48
0
2
48
1.15
110531568--110531616
20
2.5
20
80
3
64
51
0
4
44
1.20
110535726--110535755
10
3.0
10
100
0
60
70
0
0
30
0.88
110536676--110536723
21
2.2
22
82
10
55
56
4
4
35
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110537208--110537283
29
2.7
28
87
4
107
38
9
19
32
1.84
110543703--110543832
50
2.6
49
88
1
179
29
26
16
26
1.97
110543703--110543886
101
1.8
99
84
2
251
28
25
18
27
1.98
110546287--110546459
43
4.0
42
74
11
127
34
26
16
23
1.96
110546982--110547020
19
2.0
20
85
9
55
48
23
2
25
1.63
110548099--110548131
11
2.9
11
95
4
57
69
0
0
30
0.88
110550775--110550824
17
2.7
20
78
18
70
10
0
44
46
1.37
110555414--110555463
17
2.7
20
78
18
70
10
0
44
46
1.37
110563555--110563608
26
2.1
26
100
0
108
18
7
12
61
1.54
110565194--110565235
18
2.3
18
91
0
66
21
28
7
42
1.79
110567722--110567816
27
3.5
26
84
8
127
40
18
22
18
1.92
110567722--110567833
27
4.1
27
80
7
111
37
20
23
18
1.94
110567722--110567833
54
2.1
54
86
3
154
37
20
23
18
1.94
110569239--110569295
25
2.3
24
93
6
96
19
38
5
36
1.74
110569239--110569302
25
2.6
25
90
5
85
17
42
4
35
1.70
110571586--110571816
126
1.8
126
91
1
383
25
20
20
34
1.96
110571740--110571891
77
2.0
78
92
1
252
19
19
23
37
1.94
110572409--110572438
15
2.0
15
93
0
51
50
36
0
13
1.42
110572829--110572854
2
13.0
2
100
0
52
50
0
0
50
1.00
110573348--110573381
18
1.9
17
88
5
50
41
8
8
41
1.67
110573647--110573682
2
18.0
2
94
0
63
47
0
0
52
1.00
110588902--110588964
7
9.0
7
75
0
54
19
1
36
42
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110588902--110588953
21
2.5
21
83
0
68
19
1
34
44
1.62
110589156--110589264
7
15.6
7
71
7
51
11
1
39
46
1.51
110590909--110590977
24
2.8
24
71
18
70
40
4
8
46
1.55
110592552--110592685
69
1.9
70
90
1
216
36
13
13
36
1.84
110593838--110593933
9
10.3
9
80
6
111
44
22
1
31
1.60
110599484--110599527
21
2.1
21
91
0
70
22
22
54
0
1.45
110599825--110599982
41
3.7
43
82
7
151
28
20
21
29
1.98
110603745--110603822
38
2.1
38
97
0
147
48
8
5
37
1.57
110605430--110605506
9
8.6
9
83
0
73
44
16
6
32
1.74
110605526--110605566
6
6.5
6
83
10
55
17
0
4
78
0.93
110612444--110612487
17
2.5
17
82
14
54
77
0
15
6
0.97
110613953--110613990
17
2.4
17
91
8
62
55
0
13
31
1.38
110618076--110618108
15
2.1
16
88
5
50
60
0
3
36
1.12
110618091--110618152
22
2.8
22
85
4
72
56
0
1
41
1.09
110618091--110618131
22
1.9
22
95
5
75
56
0
2
41
1.13
110618349--110618421
33
2.1
36
85
7
98
47
4
8
39
1.52
110618453--110618489
18
2.0
19
89
5
58
48
0
0
51
1.00
110618719--110618796
19
3.9
19
81
8
66
39
3
2
53
1.33
110618747--110618796
10
4.9
10
82
4
64
44
0
0
56
0.99
110618747--110618796
21
2.4
21
90
3
75
44
0
0
56
0.99
110618747--110618815
31
2.2
30
84
5
93
46
1
0
52
1.09
110621304--110621349
25
1.9
23
86
8
65
58
10
2
28
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110628357--110628397
21
2.0
21
90
0
64
19
29
21
29
1.98
110631866--110631929
29
2.3
27
84
12
78
26
1
1
70
1.05
110633645--110633671
9
3.0
9
100
0
54
44
0
0
55
0.99
110645529--110645561
17
2.0
17
94
5
59
36
12
30
21
1.90
110645547--110645651
53
2.0
53
90
0
165
31
16
23
28
1.96
110653565--110653701
40
3.6
39
67
15
97
24
20
20
35
1.96
110653622--110653735
35
3.1
35
71
20
115
26
21
21
31
1.98
110653532--110653788
75
3.4
75
84
2
304
24
20
22
32
1.98
110658346--110658400
23
2.5
22
86
11
78
21
3
27
47
1.68
110663390--110663428
18
2.2
18
86
13
55
69
2
2
25
1.14
110664834--110664867
16
2.1
17
88
5
52
47
20
0
32
1.51
110665015--110665058
21
2.1
21
86
0
61
38
20
0
40
1.53
110665015--110665058
5
8.4
5
82
7
52
38
20
0
40
1.53
110665026--110665058
16
2.1
16
88
11
50
36
24
0
39
1.56
110671595--110672251
77
8.6
74
73
13
493
32
19
16
32
1.93
110671595--110672012
77
5.6
74
84
5
524
31
19
16
32
1.94
110671595--110672420
239
3.6
220
82
11
890
32
18
15
32
1.93
110672031--110672251
74
3.0
74
80
5
266
31
19
15
33
1.93
110671857--110672172
165
1.9
166
84
2
420
32
17
15
33
1.92
110671781--110672420
239
2.7
241
90
4
1005
32
18
15
32
1.93
110672270--110672413
74
1.9
75
90
1
227
31
19
15
32
1.94
110672105--110672413
163
1.9
163
85
2
431
32
18
15
33
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110680212--110680247
12
3.0
12
87
0
54
41
5
27
25
1.77
110687084--110687266
91
2.0
91
100
0
366
34
15
3
46
1.62
110689914--110690276
127
2.8
127
92
1
582
39
22
12
24
1.89
110692395--110692482
45
2.0
45
86
4
124
28
25
18
28
1.98
110692369--110693133
177
4.3
177
91
0
1172
29
22
19
29
1.98
110694225--110694250
13
2.0
13
100
0
52
0
23
0
76
0.78
110704222--110704584
127
2.8
127
90
2
557
39
23
12
24
1.90
110705197--110705267
27
2.5
30
82
11
96
59
4
4
32
1.36
110707801--110707848
23
2.1
23
96
0
87
39
4
22
33
1.74
110710618--110710662
23
2.0
23
82
8
56
37
8
13
40
1.76
110711119--110711151
9
3.3
10
87
12
50
54
0
24
21
1.45
110711396--110711495
26
3.8
25
80
5
101
43
11
16
30
1.82
110711396--110711495
52
1.9
52
82
11
125
43
11
16
30
1.82
110717075--110717210
47
2.9
47
81
4
139
23
23
18
34
1.96
110717096--110717384
48
6.0
48
71
13
159
20
22
18
38
1.94
110717097--110717315
97
2.3
97
79
10
227
22
21
17
38
1.93
110719207--110719234
6
4.7
6
100
0
56
17
35
17
28
1.93
110722645--110722724
29
2.6
30
77
16
83
55
11
0
33
1.36
110727058--110727177
43
2.8
43
77
6
134
27
20
18
34
1.95
110734060--110734098
3
13.0
3
100
0
78
33
0
0
66
0.92
110734269--110734316
15
3.3
15
70
5
53
29
0
29
41
1.56
110734263--110734322
29
2.1
29
90
0
93
28
0
31
40
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110736203--110736272
27
2.6
27
79
2
77
32
4
7
55
1.46
110746558--110746597
22
1.9
21
85
10
55
27
12
2
57
1.48
110751285--110751311
3
9.0
3
100
0
54
33
0
0
66
0.92
110755596--110755635
8
4.9
8
84
6
53
82
0
0
17
0.67
110755556--110755634
9
8.3
9
75
13
70
79
3
2
13
0.97
110755556--110755634
17
4.3
17
76
20
70
79
3
2
13
0.97
110755680--110755733
22
2.5
21
82
14
65
79
1
5
12
0.98
110755702--110755777
16
4.6
16
80
9
89
76
0
2
21
0.91
110755814--110755865
22
2.5
20
79
11
68
73
3
0
23
1.00
110756144--110756201
30
1.9
30
89
0
89
13
37
31
17
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373