genome.fa.s8.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  160  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53462306--53462483	40	4.5	40	89	2	243	24	22	27	25	2.00
53473423--53473447	13	1.9	13	100	0	50	16	36	40	8	1.77
53497660--53497703	19	2.4	19	85	7	56	50	0	9	40	1.34
53498745--53498809	15	4.7	15	70	18	68	3	30	0	66	1.07
53499608--53499646	21	1.9	21	89	5	62	28	20	28	23	1.99
53502489--53502532	19	2.4	19	85	7	56	50	0	9	40	1.34
53507772--53507833	21	2.9	19	76	19	54	66	0	4	29	1.12
53507855--53507895	21	2.0	21	90	0	64	73	4	2	19	1.13
53507997--53508110	54	2.2	53	85	4	151	50	1	14	34	1.53
53508030--53508113	27	3.1	27	66	17	75	52	2	14	30	1.54
53508199--53508263	14	4.6	14	75	9	53	63	0	3	33	1.10
53520616--53520664	11	4.6	11	80	9	50	34	2	38	24	1.67
53524703--53524854	27	5.6	27	92	3	232	27	13	28	30	1.94
53524703--53524854	55	2.8	55	92	0	241	27	13	28	30	1.94
53532867--53533018	27	5.6	27	90	3	214	27	13	29	29	1.94
53532867--53533018	55	2.8	55	88	4	225	27	13	29	29	1.94
53541154--53541189	10	3.5	10	85	7	54	75	0	5	19	1.00
53541341--53541388	24	2.0	24	87	0	69	37	4	10	47	1.57
53541502--53541528	11	2.5	11	100	0	54	37	7	22	33	1.82
53549141--53549182	22	1.9	22	85	0	57	28	0	28	42	1.56
53555874--53555923	26	2.0	25	84	11	66	60	6	14	20	1.55
53562691--53562780	20	4.6	19	72	25	73	60	1	6	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53576328--53576463	50	2.7	51	89	3	215	23	16	30	29	1.96
53578217--53578392	46	3.8	46	80	10	205	19	21	30	28	1.97
53578213--53578385	93	1.9	93	93	0	301	19	21	31	27	1.97
53583423--53583583	41	4.0	40	74	15	159	27	26	22	22	1.99
53590525--53590676	40	3.8	41	79	12	163	26	30	21	21	1.99
53597585--53597752	40	4.1	41	78	10	157	26	29	20	23	1.99
53597611--53597753	40	3.5	40	84	6	173	27	29	20	22	1.99
53604716--53604883	40	4.1	41	77	10	148	26	29	21	22	1.99
53604742--53604884	40	3.5	40	83	6	164	27	29	21	21	1.99
53608475--53608580	53	2.0	53	92	0	176	30	20	20	28	1.98
53616641--53617188	47	11.6	47	93	1	898	33	8	28	29	1.86
53616641--53617188	143	3.9	143	94	1	933	33	8	28	29	1.86
53618616--53618927	40	7.8	40	92	0	489	24	21	28	25	1.99
53622952--53623450	47	10.6	47	94	1	838	33	8	29	29	1.86
53637676--53637754	37	2.1	37	88	4	115	25	30	18	25	1.98
53637873--53638363	47	10.4	47	92	0	784	29	28	8	33	1.87
53642172--53642407	42	5.6	42	94	0	382	24	21	22	31	1.98
53648699--53648923	40	5.7	40	84	6	260	25	27	20	26	1.99
53648855--53648932	40	1.9	41	82	10	97	26	28	20	24	1.99
53655178--53655402	40	5.7	40	84	6	251	25	27	20	26	1.99
53655334--53655411	40	1.9	41	82	10	97	26	28	20	24	1.99
53657380--53657441	28	2.2	28	97	0	115	20	24	9	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53659052--53659118	31	2.2	31	91	0	107	37	11	16	34	1.85
53662274--53662436	43	3.8	43	77	13	149	31	25	19	23	1.98
53669669--53670028	186	2.0	180	82	5	445	33	20	16	29	1.95
53669999--53670157	43	3.7	43	81	10	200	28	26	20	23	1.99
53684270--53684335	33	2.0	33	96	0	123	33	22	24	19	1.97
53686951--53686991	20	2.1	19	86	4	55	31	0	9	58	1.31
53687331--53687569	43	5.6	43	87	4	349	24	17	29	28	1.97
53700364--53700424	30	2.0	30	84	6	79	22	13	31	32	1.92
53700394--53700487	40	2.3	40	92	0	152	24	20	30	24	1.98
53706524--53706736	53	4.0	53	83	3	232	37	11	23	27	1.90
53709173--53709231	30	2.0	30	83	6	75	28	23	5	42	1.75
53722306--53722367	6	10.3	6	100	0	124	16	0	0	83	0.64
53726500--53726577	29	2.7	28	80	11	95	25	12	30	30	1.93
53726530--53726857	174	1.9	174	95	0	593	30	14	23	31	1.94
53729526--53729828	40	7.6	40	89	2	396	27	28	20	24	1.99
53737514--53737816	40	7.6	40	89	2	396	27	28	20	24	1.99
53739732--53739909	27	6.6	27	80	3	160	28	29	15	27	1.96
53739758--53739908	82	1.9	81	87	4	223	27	29	15	27	1.96
53747585--53747762	27	6.6	27	79	3	151	27	29	15	27	1.96
53747611--53747761	82	1.9	81	85	4	214	27	29	16	27	1.97
53751412--53751686	49	5.7	48	81	7	290	25	16	26	31	1.96
53751421--53751686	144	1.9	143	87	2	390	25	16	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53759937--53760304	47	7.7	47	96	2	628	30	8	30	30	1.87
53760422--53760500	37	2.1	37	90	0	122	24	18	31	25	1.98
53762407--53762487	29	2.8	29	86	5	110	25	14	33	25	1.95
53762791--53762987	40	4.9	40	84	4	202	23	22	27	25	2.00
53766499--53766817	47	6.7	47	97	1	548	31	8	30	30	1.87
53766935--53767013	37	2.1	37	88	0	113	24	17	31	26	1.97
53768799--53768977	27	6.6	27	83	5	191	29	27	14	27	1.95
53768825--53768975	82	1.9	81	85	4	214	29	27	15	27	1.96
53769523--53769547	13	1.9	13	100	0	50	32	16	20	32	1.94
53779718--53779814	30	3.2	30	71	8	90	27	15	28	27	1.96
53782231--53782327	30	3.2	30	76	2	106	27	27	16	27	1.97
53790174--53790306	29	4.6	30	80	5	107	24	30	15	30	1.96
53790174--53790274	30	3.5	30	80	9	113	22	30	16	29	1.96
53790261--53790319	29	2.0	30	93	3	102	25	28	13	32	1.94
53793049--53793193	40	3.6	40	82	4	175	24	26	23	25	2.00
53797958--53798035	30	2.7	30	90	4	115	25	32	16	25	1.96
53798880--53798924	22	1.9	25	82	13	60	62	8	22	6	1.48
53804108--53804221	35	3.3	35	80	4	140	27	9	21	42	1.84
53808233--53808297	28	2.3	28	81	5	78	26	15	29	29	1.96
53816040--53816104	28	2.3	28	86	5	87	29	12	27	30	1.93
53830439--53830595	43	3.7	44	79	10	166	31	25	17	25	1.97
53832251--53832281	12	2.6	12	100	0	62	45	25	0	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53835682--53835766	39	2.2	40	86	2	118	30	31	20	17	1.95
53835848--53835992	47	3.1	45	85	7	175	28	30	8	32	1.86
53839696--53840011	40	7.9	40	88	0	452	28	29	19	22	1.98
53842632--53842776	47	3.1	46	88	3	186	27	31	8	33	1.86
53849625--53849736	44	2.6	43	86	9	149	32	25	19	23	1.98
53853828--53853882	29	2.0	27	85	7	74	38	20	0	41	1.52
53860165--53860318	42	3.7	41	81	6	168	29	15	25	29	1.96
53860165--53860318	84	1.8	83	83	4	202	29	15	25	29	1.96
53865645--53865686	18	2.3	18	91	0	66	30	4	4	59	1.39
53865656--53865694	18	2.2	18	90	0	60	35	10	5	48	1.59
53867295--53867459	42	3.9	42	78	9	167	30	14	25	29	1.95
53871984--53872049	34	2.0	33	82	8	80	28	22	19	28	1.98
53878018--53878082	34	1.9	34	93	0	112	21	23	24	30	1.99
53880793--53880853	28	2.1	29	91	8	99	29	29	13	27	1.94
53881065--53881099	16	2.2	16	94	0	61	14	17	14	54	1.72
53890898--53891103	52	3.8	52	75	6	180	37	18	24	19	1.94
53893660--53893697	20	1.9	20	88	0	58	34	10	13	42	1.78
53895592--53895629	20	1.9	20	100	0	76	31	21	18	28	1.97
53900980--53901210	49	4.7	49	78	3	248	31	26	17	24	1.97
53900980--53901209	101	2.3	97	82	3	262	31	26	17	24	1.97
53903169--53903386	40	5.5	40	89	4	302	22	22	29	25	1.99
53911267--53911480	40	5.5	40	88	7	284	21	22	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53911735--53911933	38	5.1	39	85	9	239	22	22	29	25	1.99
53911735--53911933	77	2.5	78	86	7	253	22	22	29	25	1.99
53928014--53928106	39	2.4	39	80	5	100	26	30	22	20	1.98
53928081--53928193	39	2.9	38	90	1	163	29	31	18	20	1.96
53929537--53929759	119	1.9	120	82	6	283	25	26	22	25	2.00
53929535--53929759	40	5.7	40	83	6	269	25	27	22	25	2.00
53932770--53932860	6	14.8	6	69	17	53	49	15	15	19	1.80
53932755--53932800	24	1.9	24	86	0	65	54	13	13	19	1.71
53932781--53932872	31	3.0	31	90	0	139	48	14	15	21	1.80
53933026--53933085	27	2.3	26	85	8	77	35	20	23	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373