Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  124  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40621014--40621436
48
8.9
48
94
0
724
34
6
28
30
1.82
40621577--40621679
37
2.8
37
90
0
161
23
19
32
25
1.98
40626225--40626383
39
4.1
39
90
0
255
22
25
29
23
1.99
40631832--40632029
39
5.1
39
91
0
306
21
25
29
23
1.99
40634288--40634353
32
2.1
32
100
0
132
33
3
18
45
1.65
40634292--40634369
32
2.6
30
88
10
97
30
2
20
46
1.64
40637473--40637689
40
5.5
40
88
3
289
23
23
28
24
1.99
40645231--40645445
40
5.4
40
87
3
269
23
22
28
25
1.99
40649644--40649762
46
2.7
43
84
7
157
24
20
31
23
1.98
40651682--40651716
15
2.3
15
95
0
61
48
11
14
25
1.77
40690629--40690842
46
4.6
45
77
12
195
28
16
28
26
1.97
40693425--40693469
23
2.0
22
82
4
54
26
2
26
44
1.66
40706339--40706468
47
2.8
47
89
0
188
24
16
26
31
1.97
40712520--40712656
47
3.0
47
89
2
197
31
11
30
26
1.92
40712819--40712927
37
2.9
37
95
0
191
22
19
31
26
1.98
40737127--40737235
49
2.2
49
82
9
125
33
11
11
44
1.77
40739941--40740055
37
3.1
37
92
0
185
28
31
18
21
1.97
40740201--40740335
48
2.8
48
97
0
252
30
27
7
34
1.84
40740305--40740498
47
4.1
47
88
0
271
27
29
11
31
1.91
40744530--40744880
40
8.8
40
92
0
560
25
28
21
24
1.99
40746150--40746258
37
2.9
37
89
2
148
28
29
17
24
1.97
40746404--40746538
48
2.8
48
96
0
243
30
26
7
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40746508--40746701
47
4.1
47
89
0
280
27
29
10
32
1.90
40746461--40746701
94
2.6
94
84
4
281
28
29
9
32
1.89
40752864--40752944
29
2.8
29
84
1
101
25
29
17
27
1.97
40756244--40756269
11
2.4
11
100
0
52
34
0
26
38
1.57
40759445--40759516
27
2.7
27
86
0
90
25
16
26
31
1.96
40759975--40760084
44
2.5
44
85
7
136
49
1
23
25
1.60
40767080--40767164
43
2.0
43
82
13
104
24
17
29
28
1.97
40785576--40785617
21
2.0
21
81
9
50
9
0
47
42
1.36
40791169--40791195
12
2.2
12
100
0
54
22
0
40
37
1.54
40794688--40794748
28
2.2
28
85
5
79
27
22
21
27
1.99
40795686--40795730
17
2.6
17
76
13
56
31
0
17
51
1.46
40795879--40795987
40
2.7
41
81
8
132
18
22
13
45
1.84
40795879--40795999
21
5.9
21
78
3
120
17
22
14
45
1.85
40796174--40796240
20
3.3
20
91
6
100
43
8
26
20
1.82
40800846--40801128
144
2.0
144
87
0
413
26
19
28
26
1.98
40800859--40801128
48
5.6
48
83
2
292
27
19
28
24
1.99
40804091--40804127
15
2.3
17
86
9
51
51
10
0
37
1.37
40806528--40806582
19
2.9
19
75
0
65
43
23
10
21
1.84
40809202--40809315
23
4.9
23
73
9
97
35
19
19
25
1.95
40809240--40809291
22
2.3
23
83
9
63
34
21
17
26
1.95
40816777--40816866
24
3.8
23
80
12
87
31
18
20
30
1.96
40816777--40816912
23
5.8
23
75
10
107
33
18
19
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40825402--40825456
28
2.0
28
100
0
110
49
7
29
14
1.70
40828996--40829167
79
2.2
79
84
3
220
25
21
27
25
1.99
40828943--40829165
40
5.6
39
81
8
209
25
21
27
25
1.99
40829023--40829200
79
2.2
80
80
3
191
25
21
28
24
1.99
40836333--40836504
79
2.2
79
84
3
220
25
21
27
25
1.99
40836280--40836502
40
5.6
39
81
8
209
25
21
27
25
1.99
40836360--40836539
79
2.3
79
80
3
193
25
22
27
24
2.00
40843734--40844140
110
3.7
110
83
3
462
27
18
22
30
1.97
40845095--40845174
27
3.0
27
88
0
106
17
20
22
40
1.92
40848108--40848355
123
2.0
123
93
0
424
37
14
22
25
1.93
40850722--40850897
40
4.4
40
91
2
275
23
23
28
24
2.00
40850718--40850897
79
2.3
79
90
2
281
24
23
27
24
2.00
40852234--40852455
80
2.8
78
80
6
248
26
27
21
24
1.99
40852234--40852455
40
5.6
39
83
7
216
26
27
21
24
1.99
40859611--40859913
40
7.6
40
89
2
387
24
20
28
27
1.99
40879520--40879822
40
7.6
40
89
2
387
24
20
28
27
1.99
40885016--40885069
27
2.0
27
85
0
72
38
14
5
40
1.70
40888671--40888726
27
2.1
27
100
0
112
41
3
0
55
1.17
40892750--40892789
19
2.1
19
100
0
80
42
5
17
35
1.71
40896313--40897294
490
2.0
491
96
0
1795
32
16
17
33
1.93
40898993--40899118
63
2.0
63
92
0
207
41
13
21
23
1.89
40899803--40899854
25
2.1
25
96
0
95
36
0
21
42
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40899810--40899861
25
2.2
25
82
6
63
38
1
26
32
1.68
40900675--40900713
8
4.9
8
84
9
53
12
0
0
87
0.55
40900675--40900700
7
3.7
7
100
0
52
11
0
0
88
0.52
40901078--40901114
17
2.2
17
100
0
74
27
10
27
35
1.90
40902382--40902509
64
2.0
64
100
0
256
28
9
28
34
1.88
40902521--40902648
46
2.7
46
78
7
125
21
17
21
39
1.93
40905451--40905500
22
2.3
22
89
0
73
44
44
0
12
1.41
40907523--40907652
47
2.8
47
86
9
176
35
27
15
21
1.94
40915891--40915931
19
2.2
19
95
0
73
34
14
0
51
1.43
40924273--40924424
40
3.8
41
87
3
193
24
20
28
26
1.99
40924273--40924444
80
2.2
80
81
3
195
23
19
27
28
1.99
40925913--40926020
27
4.0
27
79
4
110
30
18
13
37
1.90
40925901--40926014
54
2.1
54
86
0
156
28
18
13
40
1.88
40925970--40926041
27
2.7
27
93
0
117
31
20
11
36
1.88
40925901--40926041
54
2.6
53
80
8
133
29
19
12
39
1.88
40929839--40930053
40
5.4
40
91
2
337
22
22
26
27
1.99
40929839--40930053
79
2.7
80
91
2
337
22
22
26
27
1.99
40929839--40930053
119
1.8
119
89
4
344
22
22
26
27
1.99
40933252--40933353
48
2.1
48
83
0
123
37
15
8
38
1.79
40933792--40933836
24
1.9
23
86
4
63
44
17
0
37
1.49
40935766--40935869
51
2.0
51
98
0
199
33
15
18
32
1.92
40938291--40938411
35
3.5
35
78
4
145
42
17
10
28
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40939932--40940584
27
24.3
27
88
2
843
33
21
20
24
1.97
40941011--40941075
22
3.0
22
77
8
69
20
21
23
35
1.96
40941234--40941307
27
2.8
27
87
2
96
16
24
21
37
1.93
40941467--40941557
6
14.8
6
70
17
62
18
18
16
46
1.85
40941444--40941543
31
3.2
31
91
1
146
19
18
14
49
1.80
40941457--40941555
31
3.2
31
91
0
144
18
19
16
46
1.84
40943498--40943579
27
3.0
27
89
0
92
37
23
8
30
1.84
40943508--40944107
27
22.3
27
87
0
738
34
20
20
25
1.97
40944534--40944598
22
3.0
22
80
8
78
20
23
23
33
1.97
40944749--40944827
26
3.0
26
85
3
70
18
22
20
37
1.94
40944757--40944827
26
2.7
27
88
2
99
18
23
21
36
1.95
40944764--40944827
27
2.4
26
89
2
92
20
25
18
35
1.95
40944989--40945076
6
14.3
6
78
13
90
18
19
15
46
1.84
40944979--40945076
31
3.2
31
95
0
169
18
19
15
46
1.83
40949640--40949741
50
2.0
50
82
0
123
40
19
8
31
1.82
40949704--40949847
35
4.1
34
77
6
144
40
18
12
28
1.87
40963426--40963507
40
2.0
40
97
0
155
32
10
26
29
1.91
40980609--40980796
27
7.0
27
85
3
254
25
14
20
40
1.90
40983335--40983416
10
8.0
10
74
12
51
65
0
31
2
1.05
40984492--40984535
19
2.4
18
85
7
54
40
9
0
50
1.34
40991841--40991897
26
2.2
26
80
3
60
26
17
19
36
1.94
40996863--40996906
19
2.4
18
85
7
54
40
9
0
50
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41002548--41002606
29
2.0
31
80
12
70
40
0
18
40
1.51
41012232--41012404
49
3.5
49
82
6
215
30
26
17
26
1.97
41012219--41012404
100
1.9
99
91
1
309
30
25
17
26
1.98
41012637--41012690
27
2.0
27
85
0
72
38
14
7
38
1.75
41014979--41015178
28
7.2
28
85
1
258
29
21
10
39
1.86
41018531--41018622
27
3.4
27
90
3
132
26
20
9
43
1.83
41018612--41018752
54
2.7
53
72
15
121
39
20
12
28
1.88
41018654--41018777
27
4.7
26
83
3
140
43
20
7
28
1.78
41018754--41018839
27
3.1
27
79
11
93
40
15
8
36
1.77
41018880--41018945
27
2.4
27
78
14
73
36
24
19
19
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373