genome.fa.s8.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  141  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46737393--46737600	53	3.9	54	82	4	231	35	16	24	24	1.95
46737393--46737589	54	3.6	54	82	4	236	35	17	23	23	1.95
46740124--46740347	47	4.8	47	83	8	262	27	20	30	22	1.98
46740124--46740337	46	4.6	47	83	8	251	28	19	29	22	1.98
46740077--46740348	94	2.9	94	81	9	290	28	19	28	23	1.98
46742427--46742635	38	5.0	38	75	16	150	29	24	15	30	1.96
46742467--46742605	48	2.9	48	85	5	192	29	23	15	31	1.95
46745216--46745253	18	2.1	19	90	5	60	42	2	15	39	1.61
46749242--46749309	28	2.4	29	92	2	111	22	13	35	29	1.92
46749608--46749674	26	2.5	27	90	4	109	44	25	5	23	1.76
46758933--46758974	11	3.7	11	81	15	50	14	7	0	78	0.95
46764535--46764749	71	3.1	71	64	22	175	37	7	6	48	1.56
46764427--46764846	136	3.1	136	88	3	626	40	7	5	46	1.56
46767639--46767664	13	2.0	13	100	0	52	38	0	0	61	0.96
46785509--46785540	12	2.7	12	95	0	55	31	43	18	6	1.75
46791471--46791513	20	2.1	21	87	12	63	34	2	20	41	1.65
46797732--46797789	19	3.2	19	78	9	59	53	0	1	44	1.10
46797753--46797803	26	2.0	26	84	7	68	52	1	1	43	1.23
46797997--46798072	32	2.4	32	86	8	102	34	7	22	35	1.83
46804799--46804972	88	2.0	89	87	3	253	32	10	20	36	1.87
46809294--46809424	46	2.8	46	80	4	129	23	27	18	30	1.98
46818474--46818673	51	3.9	51	88	3	296	30	25	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46818709--46818855	24	6.0	24	76	10	145	26	19	13	40	1.88
46818700--46818864	76	2.2	75	82	7	215	27	21	13	38	1.90
46820319--46820431	57	2.0	57	100	0	226	26	13	21	38	1.90
46820488--46820518	11	2.8	11	95	0	53	25	3	25	45	1.69
46825588--46825634	24	2.0	24	100	0	94	29	6	17	46	1.72
46836598--46836624	12	2.2	12	100	0	54	33	33	7	25	1.84
46844862--46845089	40	5.7	40	90	3	361	26	27	21	24	1.99
46844829--46845085	80	3.2	80	90	3	378	26	27	21	24	1.99
46852454--46852681	40	5.7	40	88	3	334	26	27	21	25	1.99
46866833--46866881	25	2.0	25	100	0	98	26	20	4	48	1.67
46867798--46867861	26	2.4	27	82	10	87	37	25	9	28	1.87
46867965--46868072	27	4.0	28	86	2	132	22	23	19	35	1.96
46867967--46868072	55	1.9	54	84	5	142	22	22	19	34	1.96
46871927--46872031	27	3.8	29	82	11	123	22	24	20	32	1.98
46871927--46872031	55	1.9	54	86	5	149	22	24	20	32	1.98
46885698--46885788	28	3.2	28	90	4	139	31	23	24	20	1.98
46885894--46885958	28	2.3	28	91	0	103	32	7	27	32	1.85
46886801--46886879	39	2.0	39	100	0	158	26	12	27	32	1.93
46893553--46893643	28	3.2	28	90	4	139	31	23	24	20	1.98
46893750--46893813	28	2.3	28	86	0	83	32	7	28	31	1.85
46901410--46901671	39	6.7	40	88	7	337	24	27	22	25	2.00
46928873--46929058	40	4.7	40	88	2	250	24	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46939545--46939922	50	7.5	50	77	5	323	26	17	25	31	1.97
46939545--46939884	101	3.4	101	85	0	410	25	17	25	31	1.97
46940132--46940163	16	2.0	16	93	0	55	46	0	18	34	1.49
46940490--46940826	180	1.9	180	86	2	480	40	8	18	32	1.82
46943628--46943671	15	2.9	15	87	9	63	13	22	13	50	1.77
46946246--46946282	19	1.9	19	88	0	56	27	0	21	51	1.48
46946643--46947074	151	2.9	150	85	3	544	25	18	25	31	1.98
46946689--46947071	101	3.8	99	76	7	342	26	19	24	30	1.98
46946639--46947080	50	8.8	50	76	5	347	26	18	24	30	1.98
46947143--46947174	16	2.0	16	93	0	55	46	0	18	34	1.49
46959111--46959145	16	2.1	17	94	5	63	5	22	14	57	1.59
46962167--46962254	6	14.3	6	71	17	65	47	15	18	18	1.83
46962167--46962254	19	4.8	18	71	18	65	47	15	18	18	1.83
46962176--46962254	31	2.5	31	85	0	104	48	15	18	17	1.82
46962666--46963113	27	16.6	27	83	0	491	25	19	18	37	1.94
46962664--46963113	81	5.6	81	86	2	591	25	19	18	37	1.94
46963125--46963262	54	2.6	54	78	2	143	30	6	25	37	1.81
46963098--46963276	27	6.6	27	78	6	105	31	8	22	37	1.84
46963098--46963276	81	2.2	81	80	5	184	31	8	22	37	1.84
46965784--46965812	14	2.0	15	93	6	51	31	0	20	48	1.50
46966939--46967068	43	3.0	43	83	6	174	23	21	25	29	1.99
46970073--46970209	39	3.5	39	93	1	222	45	22	3	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46970753--46971344	306	1.9	307	88	2	886	36	23	11	28	1.90
46973963--46974018	16	3.7	15	76	9	51	30	21	7	41	1.80
46976295--46976334	19	2.1	19	90	0	62	40	12	12	35	1.81
46980362--46980639	48	5.8	48	87	1	351	27	15	28	28	1.96
46981697--46981754	27	2.1	27	96	0	107	17	22	3	56	1.55
46987237--46987407	23	7.4	23	73	12	127	33	21	19	25	1.97
46987250--46987407	68	2.3	68	82	6	185	34	20	20	24	1.96
46993139--46993220	22	3.7	22	78	14	87	36	19	20	23	1.95
46993132--46993261	22	5.7	23	70	15	83	36	20	22	21	1.95
46993158--46993265	45	2.4	45	85	4	137	35	22	21	21	1.96
46996496--46996533	19	2.0	19	89	0	58	44	13	5	36	1.66
47013190--47013361	93	1.8	93	91	2	283	29	29	20	20	1.98
47013183--47013358	46	3.8	46	77	14	182	30	28	20	19	1.97
47013227--47013377	46	3.2	46	73	14	141	30	27	18	23	1.98
47014730--47014863	52	2.6	52	86	6	193	26	30	15	26	1.96
47020778--47020848	21	3.3	21	65	18	56	50	16	4	28	1.64
47020757--47020860	43	2.5	43	93	3	185	50	18	6	25	1.71
47022633--47022693	32	1.9	32	100	0	122	18	42	22	16	1.89
47022630--47022684	15	3.6	15	71	20	51	16	40	25	18	1.91
47026890--47026958	25	2.8	25	90	0	111	24	21	24	28	1.99
47034684--47034721	20	1.9	20	94	0	67	39	10	18	31	1.85
47034767--47034835	25	2.8	25	95	0	120	24	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47043828--47043984	43	3.7	43	75	8	151	28	26	18	27	1.98
47044928--47045022	25	3.8	25	87	5	138	27	21	23	28	1.99
47044928--47045022	50	1.9	50	91	0	154	27	21	23	28	1.99
47045224--47045414	27	7.0	27	89	0	283	24	22	19	33	1.97
47045375--47045610	27	8.8	27	80	5	183	28	11	20	39	1.87
47045417--47045610	27	7.2	27	82	0	217	29	9	19	40	1.84
47045402--47045610	81	2.6	81	84	3	253	29	10	20	40	1.85
47045603--47045931	27	12.2	27	88	1	446	38	8	23	29	1.84
47045485--47045635	81	1.9	81	82	0	194	29	7	23	39	1.82
47048951--47049210	40	6.5	40	84	4	305	27	27	22	22	1.99
47057208--47057273	23	2.9	23	80	10	73	27	4	0	68	1.09
47057208--47057281	24	3.1	23	79	16	80	27	5	0	67	1.12
47057222--47057282	30	2.0	32	83	6	81	31	4	0	63	1.15
47057209--47057311	48	2.1	48	80	7	111	29	6	1	62	1.32
47063707--47063733	7	3.9	7	100	0	54	25	14	0	59	1.36
47066832--47066987	42	3.7	42	77	5	145	32	23	15	28	1.95
47071494--47071555	26	2.3	27	78	10	74	37	24	8	30	1.84
47071669--47071739	27	2.6	27	86	2	88	25	28	12	33	1.92
47072928--47072996	34	2.0	34	100	0	138	40	11	17	30	1.85
47073724--47073755	3	10.7	3	93	0	55	31	3	0	65	1.08
47085623--47085847	40	5.6	40	83	5	258	25	24	27	23	2.00
47085623--47085883	80	3.3	80	83	3	312	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47085623--47085883	120	2.2	120	83	6	325	25	24	26	23	2.00
47098231--47098445	27	8.0	27	80	4	227	22	20	19	37	1.95
47098219--47098326	54	2.0	54	83	3	137	25	19	20	34	1.96
47098231--47098445	54	4.0	54	83	0	259	22	20	19	37	1.95
47098231--47098445	81	2.7	80	84	4	261	22	20	19	37	1.95
47098438--47098971	27	19.9	27	80	4	301	33	8	20	37	1.83
47098815--47098973	79	2.0	82	87	3	234	30	9	19	40	1.83
47100640--47100747	25	4.4	24	85	6	83	27	25	21	25	1.99
47100660--47100746	25	3.5	25	92	1	140	26	25	24	24	2.00
47100951--47101246	27	11.0	27	89	0	430	24	20	19	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373