genome.fa.s8.2.7.7.80.10.50.1000.312.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  312  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105375199--105375275	9	8.6	9	88	0	100	24	7	23	44	1.80
105375199--105375276	27	2.9	27	88	0	120	24	7	23	44	1.79
105378362--105378610	124	2.0	124	97	0	471	34	12	16	37	1.85
105382150--105382207	29	2.0	29	93	0	98	27	15	12	44	1.82
105383889--105383938	18	2.8	18	82	11	59	64	0	2	34	1.05
105383891--105383938	25	1.9	25	83	8	62	64	0	2	33	1.05
105386576--105386734	27	5.9	27	77	11	157	34	22	23	19	1.96
105386594--105386734	54	2.6	54	90	2	212	34	23	23	18	1.96
105390705--105390740	13	2.8	12	91	4	54	55	2	0	41	1.14
105392089--105392134	22	2.1	22	87	0	65	32	13	4	50	1.61
105406901--105406942	20	2.0	21	86	4	59	42	4	0	52	1.22
105410456--105410506	25	2.0	25	96	0	93	23	9	27	39	1.86
105413140--105413214	13	5.8	13	82	0	87	30	8	25	36	1.85
105413140--105413214	39	1.9	39	88	0	114	30	8	25	36	1.85
105414649--105414696	24	2.0	24	95	0	87	29	14	8	47	1.73
105416861--105416997	71	1.9	71	83	2	177	24	12	27	35	1.92
105416935--105417032	49	2.0	49	82	4	117	26	14	27	31	1.95
105417396--105417510	49	2.3	48	81	14	128	31	25	18	25	1.97
105428663--105428710	24	2.0	24	95	0	87	18	16	18	45	1.85
105445141--105445192	16	3.6	16	69	30	53	51	0	1	46	1.12
105445136--105445196	26	2.3	26	94	0	104	54	0	1	44	1.10
105445129--105445183	26	2.2	24	84	12	83	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105447082--105447106	13	1.9	13	100	0	50	48	16	0	36	1.46
105448480--105448528	10	4.9	10	89	0	71	22	10	2	65	1.34
105449290--105449328	14	2.7	15	84	11	55	12	7	5	74	1.20
105454193--105454230	19	2.0	19	90	10	60	21	7	0	71	1.11
105460636--105460700	32	2.0	32	100	0	130	24	6	15	53	1.64
105461154--105461183	13	2.3	13	94	0	51	16	20	36	26	1.93
105464356--105464424	23	2.8	26	80	10	90	18	2	0	78	0.88
105464359--105464418	7	8.1	7	73	23	52	18	3	0	78	0.89
105464352--105464425	28	2.7	29	75	21	86	18	2	0	78	0.87
105466247--105466295	10	4.9	10	85	9	73	20	8	2	69	1.24
105466863--105466894	16	1.9	17	93	6	57	43	31	9	15	1.78
105466934--105466967	17	1.9	18	88	5	52	29	11	2	55	1.50
105469790--105469833	20	2.2	20	100	0	88	20	20	38	20	1.94
105472538--105472583	24	1.9	24	86	0	65	34	13	17	34	1.88
105472512--105472790	71	3.9	72	73	6	228	36	11	16	35	1.85
105472621--105472916	46	6.3	47	68	8	138	35	9	16	38	1.82
105472653--105472739	24	3.6	24	76	0	84	41	9	14	34	1.78
105472512--105472814	141	2.1	141	85	1	401	35	11	16	35	1.85
105472857--105472952	24	4.1	24	69	10	81	32	8	18	40	1.81
105472746--105472930	46	4.0	47	74	6	153	33	10	17	38	1.83
105472989--105473542	54	10.3	54	77	6	480	39	12	21	25	1.90
105472991--105473542	108	5.1	108	80	4	555	39	12	21	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105472989--105473540	162	3.4	161	78	6	566	39	12	21	26	1.89
105478876--105478925	18	2.8	17	84	6	55	68	2	0	30	1.01
105485914--105485953	21	1.9	20	85	10	53	57	7	0	35	1.27
105486641--105486718	42	1.9	42	86	5	115	58	2	11	26	1.45
105487437--105487486	10	5.0	10	81	13	59	68	2	8	22	1.26
105488139--105488321	97	1.9	97	85	2	251	31	23	14	30	1.94
105489185--105489223	5	8.0	5	88	5	53	61	0	2	35	1.10
105494884--105495010	39	3.3	39	84	2	175	31	19	25	22	1.98
105494883--105495036	77	2.0	76	80	6	168	31	20	26	22	1.98
105509487--105509613	39	3.3	39	83	2	175	30	19	25	23	1.98
105513148--105513237	38	2.4	38	84	0	108	23	21	26	28	1.99
105513241--105513386	43	3.4	43	90	1	240	9	23	33	33	1.87
105513351--105513413	27	2.3	27	97	0	117	6	23	34	34	1.81
105513751--105513858	45	2.5	42	85	8	128	23	24	26	25	2.00
105517443--105517490	19	2.5	20	80	10	55	66	2	8	22	1.29
105517921--105517997	20	3.8	20	72	11	59	42	1	3	51	1.28
105520111--105520146	3	12.3	3	94	5	65	69	0	30	0	0.89
105524389--105524504	33	3.5	33	83	1	144	26	25	14	32	1.95
105524416--105524633	33	6.7	32	79	6	168	31	23	11	33	1.90
105524386--105524633	65	3.8	62	74	8	190	29	23	12	35	1.91
105525318--105525365	21	2.2	22	82	14	64	35	16	0	47	1.47
105530992--105531043	27	1.9	27	88	7	79	32	17	23	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105531179--105531279	27	3.8	26	79	7	96	20	22	20	35	1.96
105532989--105533026	17	2.2	17	95	0	67	42	13	15	28	1.85
105534793--105534914	27	4.5	27	90	0	172	32	22	21	23	1.98
105535040--105535126	27	3.3	27	78	9	81	20	22	20	35	1.96
105536973--105537207	48	4.9	47	86	3	317	27	28	17	27	1.98
105541220--105541282	21	3.0	21	100	0	126	33	9	28	28	1.88
105541253--105541313	31	2.0	31	100	0	122	22	11	32	32	1.90
105541232--105541334	52	2.0	52	100	0	206	27	10	31	31	1.90
105541284--105541334	21	2.4	21	100	0	102	27	9	31	31	1.89
105553925--105554024	50	2.0	50	98	0	191	29	41	4	26	1.74
105561519--105561638	62	2.0	60	85	3	159	40	3	7	49	1.48
105564534--105564573	20	2.1	18	90	9	62	0	32	0	67	0.91
105571863--105571902	20	2.1	18	90	9	62	0	32	0	67	0.91
105571972--105572008	18	2.1	17	90	5	56	48	0	0	51	1.00
105574431--105574971	126	4.3	126	86	1	677	29	15	15	39	1.89
105575068--105575149	31	2.5	33	82	9	98	37	18	0	43	1.50
105575115--105575170	27	2.0	28	93	3	96	35	17	0	46	1.49
105577522--105577611	18	4.9	19	72	13	64	34	1	3	61	1.20
105578273--105578303	16	2.0	16	93	6	55	54	0	0	45	0.99
105578638--105578770	69	1.9	69	84	0	176	36	9	15	37	1.81
105579843--105579905	30	2.1	30	87	0	90	23	1	15	58	1.46
105585458--105585502	4	11.2	4	95	0	72	71	0	28	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105585984--105586045	7	8.7	7	91	7	74	70	4	0	24	1.06
105585984--105586054	21	3.2	21	77	20	74	70	4	0	25	1.05
105598533--105598693	62	2.6	62	91	0	250	24	26	24	24	2.00
105611514--105611539	12	2.2	12	100	0	52	84	0	0	15	0.62
105619099--105619172	22	3.4	22	80	0	85	33	22	27	16	1.95
105619419--105619479	27	2.3	27	82	5	70	24	18	21	36	1.95
105622398--105622450	27	2.0	27	88	7	81	30	26	26	16	1.97
105622595--105622641	22	2.1	22	88	0	67	31	27	29	10	1.90
105624474--105624565	35	2.6	35	89	6	150	41	17	16	25	1.89
105624474--105624577	35	3.0	34	77	16	113	45	16	14	24	1.84
105625087--105625124	4	9.8	4	88	11	53	78	0	21	0	0.74
105625087--105625132	23	2.0	23	91	8	76	78	0	21	0	0.76
105626204--105626286	43	1.9	43	87	0	121	51	2	26	19	1.59
105628809--105628842	17	2.0	17	88	0	50	61	5	11	20	1.50
105629562--105629658	42	2.3	41	79	8	115	29	23	18	27	1.98
105631137--105631232	42	2.3	43	79	1	113	29	19	30	20	1.97
105633722--105633789	25	2.7	25	74	0	73	36	20	14	27	1.92
105636434--105636541	56	1.9	56	98	0	207	25	25	25	23	2.00
105637254--105637292	19	2.1	19	95	0	69	25	23	12	38	1.90
105638127--105638177	26	2.0	24	85	14	68	43	19	0	37	1.51
105638927--105639076	43	3.5	42	80	5	158	33	25	18	23	1.97
105638927--105639093	86	2.0	85	81	8	196	33	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105640339--105640390	2	26.0	2	92	0	86	51	46	0	1	1.12
105640612--105640775	43	3.8	43	79	9	183	31	26	18	23	1.97
105640612--105640767	85	1.8	84	84	9	210	30	26	18	23	1.98
105642400--105642438	20	2.0	20	85	10	53	64	5	10	20	1.44
105649770--105649806	18	2.1	17	90	5	56	37	16	10	35	1.83
105650247--105650334	27	3.3	26	84	7	113	36	23	22	17	1.94
105654292--105654487	27	7.3	27	79	5	193	27	23	9	39	1.86
105654292--105654442	79	1.9	80	89	4	234	27	22	10	39	1.87
105654290--105654487	54	3.7	53	82	7	224	26	23	10	39	1.86
105654486--105654642	27	5.8	27	78	5	140	40	19	10	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373