genome.fa.s8.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  132  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43596155--43596418	143	1.8	143	97	0	501	30	28	7	34	1.85
43596155--43596418	96	2.8	96	93	3	437	30	28	7	34	1.85
43596155--43596418	47	5.5	47	92	2	429	30	28	7	34	1.85
43604743--43604914	46	3.7	45	77	7	184	29	28	21	20	1.98
43604748--43604918	93	1.8	93	93	0	297	28	29	21	20	1.98
43605336--43605395	30	2.0	30	86	0	84	31	25	5	38	1.77
43607918--43607965	25	1.9	25	86	0	69	31	22	16	29	1.96
43608012--43608049	11	3.6	11	79	13	53	36	13	18	31	1.89
43608096--43608189	25	3.8	25	94	1	163	25	26	23	24	2.00
43608096--43608214	49	2.4	50	84	6	127	26	25	23	24	2.00
43608420--43608515	31	3.1	31	90	1	149	35	19	22	21	1.96
43609296--43609401	43	2.5	43	84	0	131	26	26	16	30	1.97
43615594--43615642	22	2.0	26	85	14	70	61	4	4	30	1.33
43629385--43629562	27	6.6	27	82	3	196	26	15	28	29	1.96
43629386--43629541	82	1.9	81	86	3	224	26	15	28	29	1.96
43629382--43629562	82	2.2	81	82	2	220	26	15	28	29	1.96
43637446--43637623	27	6.6	27	82	3	196	26	15	28	29	1.96
43637447--43637602	82	1.9	81	86	3	224	27	15	28	28	1.96
43639477--43639694	40	5.5	40	87	2	271	23	22	27	25	2.00
43645960--43646054	44	2.2	42	87	7	129	23	16	27	32	1.96
43645960--43646086	42	2.9	43	82	12	129	22	16	26	33	1.95
43645960--43646086	44	2.9	42	83	12	127	22	16	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43646017--43646097	42	1.9	42	84	2	108	24	16	24	34	1.95
43646222--43646357	67	2.0	67	100	0	272	36	5	23	34	1.79
43646885--43646931	11	4.6	10	80	12	51	17	2	27	53	1.55
43652592--43652726	56	2.4	56	94	0	234	31	25	14	28	1.95
43654936--43654967	16	2.0	16	93	0	55	6	28	15	50	1.68
43662847--43662983	56	2.4	57	85	3	179	35	23	13	27	1.93
43662959--43663030	31	2.3	31	90	0	117	25	29	15	30	1.96
43663128--43663187	29	2.1	29	100	0	120	41	21	10	26	1.85
43666326--43666543	40	5.5	40	86	3	273	25	27	22	24	2.00
43666326--43666547	80	2.8	79	87	3	304	25	26	22	25	2.00
43674602--43674815	39	5.5	40	87	5	296	25	26	23	24	2.00
43674602--43674819	79	2.8	77	88	4	312	25	26	22	25	2.00
43682883--43683139	40	6.4	40	90	2	385	25	26	23	24	2.00
43688497--43688606	40	2.8	40	90	0	166	23	15	23	37	1.93
43699624--43699748	39	3.2	38	88	4	178	23	22	28	25	1.99
43699624--43699767	39	3.7	38	86	7	173	23	23	28	24	2.00
43699624--43699767	78	1.8	78	83	5	193	23	23	28	24	2.00
43706448--43706573	39	3.2	39	86	0	171	23	21	26	27	1.99
43713422--43713483	27	2.3	28	83	5	83	64	3	3	29	1.25
43713402--43713479	27	3.0	27	79	7	72	66	3	2	26	1.22
43713466--43713529	30	2.1	30	83	11	78	60	0	3	35	1.12
43715266--43715617	83	4.2	83	95	0	614	27	20	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43715541--43716015	119	4.0	119	93	0	790	29	18	17	33	1.94
43716007--43716186	44	4.1	44	73	8	150	28	23	15	33	1.94
43717058--43717100	20	2.3	18	88	11	68	0	13	0	86	0.58
43717058--43717102	13	3.3	13	87	6	63	0	13	0	86	0.57
43717058--43717101	19	2.2	20	88	4	72	0	13	0	86	0.57
43720328--43720483	40	3.9	40	86	5	226	25	23	28	23	2.00
43728177--43728357	40	4.6	39	88	4	238	24	22	28	24	2.00
43728177--43728380	79	2.6	80	83	5	281	24	22	27	25	2.00
43730273--43730454	39	4.7	40	78	11	173	24	21	27	25	2.00
43748650--43748867	40	5.5	40	87	2	280	26	27	22	22	1.99
43750124--43750162	10	3.9	10	83	9	53	0	17	0	82	0.68
43750788--43750818	12	2.6	12	94	0	53	77	6	0	16	0.97
43754032--43754128	34	2.9	34	83	6	124	24	23	24	26	2.00
43755290--43755680	196	2.0	195	95	0	710	25	17	32	24	1.97
43757664--43757926	40	6.6	40	85	3	298	27	26	20	25	1.99
43765602--43765824	40	5.6	39	85	3	241	26	27	20	24	1.99
43765602--43765824	120	1.9	119	81	6	272	26	27	20	24	1.99
43771264--43771294	12	2.6	12	94	0	53	38	0	41	19	1.51
43773110--43773284	50	3.5	49	86	5	219	29	26	17	25	1.98
43773110--43773292	101	1.8	98	84	3	249	28	27	18	25	1.98
43779202--43779424	79	2.8	79	83	9	260	24	27	21	26	2.00
43779202--43779424	39	5.7	40	86	8	257	24	27	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43782419--43782465	22	2.1	22	84	7	60	27	2	44	25	1.65
43782498--43782562	34	1.9	34	87	0	94	26	24	23	26	2.00
43789124--43789154	16	1.9	16	93	0	53	41	9	0	48	1.36
43798193--43798322	41	3.0	42	80	11	120	30	26	12	30	1.92
43798229--43798322	49	2.0	47	91	4	152	31	27	12	27	1.93
43798422--43798570	31	4.8	31	82	0	181	28	26	18	27	1.98
43803529--43803735	45	4.6	45	92	3	321	20	20	30	28	1.98
43803529--43803790	90	3.0	90	86	8	321	22	19	30	27	1.98
43806283--43806317	19	1.9	17	88	11	52	25	5	0	68	1.11
43806418--43806485	27	2.5	27	85	0	82	17	27	25	29	1.97
43806574--43806622	22	2.3	20	80	13	53	63	4	30	2	1.24
43809816--43809858	18	2.4	18	80	7	52	44	2	2	51	1.27
43809827--43809914	44	2.0	42	85	12	117	38	12	2	46	1.54
43810164--43810261	48	2.0	48	98	0	187	27	24	15	32	1.95
43812631--43812756	39	3.2	39	87	0	180	32	17	26	23	1.97
43815583--43815611	14	2.1	14	100	0	58	34	6	31	27	1.83
43818445--43818616	93	1.8	93	90	2	274	28	29	19	22	1.98
43818438--43818613	46	3.8	46	77	14	173	29	28	19	22	1.98
43825994--43826112	45	2.6	46	90	5	179	28	28	21	21	1.99
43841458--43841628	93	1.8	92	93	3	299	28	29	20	21	1.98
43841451--43841625	46	3.8	46	78	15	200	29	29	20	20	1.97
43849003--43849122	46	2.6	46	92	2	188	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43854966--43855163	43	4.6	43	92	0	324	30	31	25	13	1.93
43855161--43855263	38	2.7	38	84	0	125	32	26	20	21	1.98
43859170--43859201	15	2.0	17	88	11	50	25	0	31	43	1.55
43867630--43867689	30	2.0	30	83	0	75	30	23	8	38	1.84
43876607--43876830	56	4.0	56	87	3	299	34	24	14	26	1.94
43876607--43876830	112	2.0	112	88	1	333	34	24	14	26	1.94
43883272--43883407	56	2.4	56	85	0	191	31	24	13	30	1.94
43887818--43887893	38	2.0	38	94	5	136	32	26	14	26	1.94
43889167--43889252	31	2.8	31	87	1	138	23	24	18	33	1.97
43889457--43889539	25	3.4	24	83	11	80	27	22	20	28	1.99
43889470--43889539	25	2.8	25	88	0	104	28	22	22	25	1.99
43889587--43889643	20	2.8	20	94	5	98	33	17	10	38	1.84
43889587--43889655	11	6.7	11	77	14	76	33	17	11	37	1.86
43892024--43892335	47	6.6	47	92	0	446	33	12	28	25	1.92
43892088--43892161	23	3.2	23	62	24	55	28	10	29	31	1.91
43892064--43892138	24	3.2	24	62	24	59	28	13	32	26	1.94
43892345--43892435	46	2.0	46	86	0	128	34	6	31	27	1.83
43900912--43900997	31	2.8	31	89	1	138	24	25	18	31	1.98
43901215--43901309	25	3.8	25	94	0	163	26	23	25	25	2.00
43901353--43901401	11	4.7	11	80	12	59	32	18	12	36	1.88
43915899--43916077	27	6.6	27	82	3	198	27	15	27	30	1.96
43915901--43916056	82	1.9	81	86	3	224	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43915897--43916077	82	2.2	81	81	2	220	27	14	27	30	1.95
43924045--43924222	27	6.6	27	83	3	205	26	15	27	30	1.96
43924046--43924196	82	1.9	81	88	4	232	27	15	27	29	1.96
43924045--43924222	82	2.2	81	83	3	223	26	15	27	30	1.96
43928490--43928531	20	2.1	20	90	0	66	42	26	2	28	1.67
43943857--43943897	20	2.0	20	90	0	64	2	0	12	85	0.70
43943862--43943895	17	2.0	17	88	0	50	0	0	11	88	0.52
43944234--43944266	17	1.9	17	88	11	50	81	0	0	18	0.68
43948687--43948941	40	6.5	40	89	4	360	22	23	28	25	1.99
43948687--43948941	78	3.2	80	88	5	351	22	23	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373