genome.fa.s8.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  98  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31775072--31775108	19	1.9	19	88	0	56	16	32	18	32	1.93
31775362--31775397	18	2.0	18	94	0	63	38	25	5	30	1.78
31789005--31789031	12	2.2	12	100	0	54	29	33	22	14	1.94
31791900--31791952	20	2.7	20	96	0	97	49	1	18	30	1.59
31794330--31794444	55	2.1	56	82	8	137	35	22	24	17	1.95
31794355--31794444	27	3.2	27	81	7	101	32	24	24	18	1.97
31794552--31794641	28	3.2	28	96	0	162	31	7	26	34	1.85
31800954--31800987	10	3.3	10	84	8	50	50	11	8	29	1.69
31802096--31802185	27	3.2	28	79	7	94	32	23	24	20	1.98
31802291--31802410	28	4.3	28	96	1	215	31	7	26	34	1.84
31804216--31804284	20	3.4	19	75	25	70	46	10	15	27	1.78
31804236--31804297	20	3.0	21	70	29	69	41	12	14	30	1.83
31804214--31804297	41	2.0	41	97	0	159	41	11	16	29	1.84
31809269--31809328	30	2.0	30	90	6	95	61	16	11	10	1.55
31809260--31809320	15	4.1	15	76	17	65	62	14	13	9	1.55
31812211--31812240	14	2.1	14	93	0	51	36	26	0	36	1.57
31812330--31812455	50	2.6	49	87	3	164	30	30	15	23	1.95
31819575--31819625	20	2.5	21	84	9	70	52	1	7	37	1.42
31821773--31821807	18	2.1	17	89	10	54	25	14	11	48	1.77
31830651--31830860	43	4.9	42	75	5	172	31	22	15	30	1.95
31831678--31831822	40	3.6	40	85	4	193	25	24	26	23	2.00
31839701--31839845	40	3.6	40	81	8	168	26	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31855113--31855337	40	5.6	40	82	3	256	23	26	24	26	2.00
31855077--31855337	120	2.2	120	81	7	300	24	25	23	26	2.00
31855077--31855337	80	3.3	80	82	4	271	24	25	23	26	2.00
31862532--31862756	40	5.6	40	80	2	245	24	26	24	25	2.00
31862532--31862756	80	2.8	80	81	0	270	24	26	24	25	2.00
31871867--31871957	37	2.5	37	83	1	112	16	14	30	38	1.88
31872850--31872962	54	2.1	54	83	6	140	25	27	25	21	1.99
31884958--31885030	32	2.3	32	85	0	92	34	20	16	28	1.94
31885558--31885610	27	2.0	27	92	0	88	26	20	18	33	1.96
31885569--31885699	27	4.9	27	79	1	120	28	14	20	36	1.92
31885568--31885698	54	2.4	54	79	5	140	28	14	20	36	1.92
31886144--31886183	17	2.4	17	91	8	64	27	45	20	7	1.78
31887848--31888027	40	4.5	40	78	10	181	25	27	22	24	2.00
31887848--31887993	40	3.7	40	86	5	199	24	28	21	25	1.99
31896373--31896422	26	1.9	26	84	15	68	42	16	10	32	1.81
31898286--31898311	13	2.0	13	100	0	52	61	30	0	7	1.24
31905422--31905483	25	2.4	27	81	10	76	38	1	4	54	1.31
31910084--31910146	25	2.4	28	76	12	71	36	0	6	57	1.24
31910132--31910160	15	1.9	15	100	0	58	41	0	0	58	0.98
31911330--31911553	40	5.7	40	85	5	287	24	22	27	25	2.00
31911330--31911553	79	2.8	80	86	7	296	24	22	27	25	2.00
31915403--31915440	19	2.0	19	94	0	67	26	15	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31915493--31915665	46	3.7	45	76	17	158	26	18	31	23	1.98
31915502--31915713	46	4.5	46	77	8	119	27	19	30	23	1.98
31917185--31917325	27	5.2	27	81	3	92	38	21	9	29	1.86
31917277--31917352	27	2.8	27	83	0	80	34	25	7	32	1.85
31917347--31917400	27	2.0	27	88	0	81	37	18	20	24	1.94
31917354--31917409	27	2.1	27	86	0	76	33	21	23	21	1.97
31924556--31924780	49	4.7	48	95	1	373	30	8	30	30	1.88
31924556--31924780	96	2.3	95	91	3	371	30	8	30	30	1.88
31924898--31924976	37	2.1	37	90	0	122	24	18	31	25	1.98
31931622--31932816	244	4.9	246	94	5	2121	37	22	7	33	1.82
31931622--31932816	479	2.5	490	94	4	2158	37	22	7	33	1.82
31932940--31932971	13	2.5	13	94	0	55	34	18	21	25	1.96
31934983--31935111	39	3.3	39	87	2	195	20	27	20	30	1.98
31951532--31951739	55	3.8	54	79	6	224	36	15	25	22	1.94
31951539--31951739	108	1.8	110	87	4	300	35	16	24	22	1.94
31951855--31951899	23	1.9	24	86	4	65	42	8	24	24	1.83
31951978--31952008	16	1.9	16	93	0	53	41	0	22	35	1.54
31961215--31961502	27	10.7	26	82	7	279	40	19	7	32	1.80
31961205--31961501	54	5.5	54	88	0	371	39	19	8	32	1.81
31961215--31961549	81	4.1	81	83	4	356	40	19	8	31	1.81
31961215--31961609	27	14.6	27	76	8	270	39	20	8	31	1.82
31961594--31961736	27	5.3	27	86	0	178	36	19	19	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31961565--31961746	81	2.3	79	79	7	197	34	21	16	27	1.95
31962049--31962109	32	1.9	32	86	0	86	21	22	21	34	1.97
31962253--31962441	6	30.7	6	72	17	120	19	16	14	49	1.79
31962249--31962307	25	2.4	25	82	0	82	22	15	11	50	1.76
31962271--31962353	37	2.2	37	78	0	94	19	15	16	48	1.82
31962314--31962375	25	2.5	25	91	0	97	19	17	16	46	1.84
31962253--31962441	62	3.1	62	84	2	247	19	16	14	49	1.79
31962334--31962420	37	2.4	37	88	0	138	19	17	13	49	1.79
31962312--31962441	19	7.1	18	72	15	61	18	16	14	50	1.79
31964019--31964136	43	2.8	42	75	7	121	31	13	24	30	1.94
31969118--31969151	16	2.2	16	89	5	52	26	8	14	50	1.72
31973895--31973937	21	2.1	20	83	12	52	18	0	44	37	1.50
31974971--31975201	106	2.2	107	88	1	347	30	16	16	37	1.90
31974971--31975203	27	8.7	27	90	1	317	30	16	16	36	1.91
31975196--31975285	27	3.3	27	89	3	137	43	18	16	21	1.88
31988776--31988800	13	1.9	13	100	0	50	32	20	16	32	1.94
31990214--31990429	47	4.6	47	89	1	297	31	8	31	29	1.87
31990548--31990626	38	2.1	37	86	6	106	25	17	30	26	1.97
31993390--31993423	18	1.9	18	94	5	61	29	14	11	44	1.81
31994460--31994572	29	4.0	29	90	3	176	29	32	14	23	1.94
31994460--31994571	57	2.0	57	91	3	181	28	33	14	24	1.94
31996655--31996708	22	2.5	22	72	6	56	44	14	0	40	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32002378--32002409	15	2.0	17	88	11	50	43	31	0	25	1.55
32005640--32005818	27	6.6	27	83	5	191	29	27	15	27	1.96
32005661--32005816	82	1.9	81	86	3	224	28	28	15	27	1.96
32006366--32006390	13	1.9	13	100	0	50	32	16	20	32	1.94
32012106--32012267	47	3.4	47	90	3	261	32	7	29	30	1.85
32012106--32012266	49	3.4	49	92	5	276	32	7	29	31	1.85
32034837--32034942	55	1.9	55	80	0	122	19	29	25	25	1.99
32037386--32037589	47	4.3	47	89	0	309	27	30	8	32	1.86
32040832--32040999	47	3.6	47	90	0	255	33	8	30	27	1.86
32042978--32043196	40	5.5	40	94	0	375	24	21	28	25	1.99
32047200--32047341	40	3.6	40	80	12	159	24	23	28	23	2.00
32047200--32047347	79	1.9	80	81	7	185	25	22	28	22	1.99
32047566--32047733	47	3.6	47	88	0	246	33	8	29	28	1.86
32049257--32049495	47	5.1	47	92	0	415	29	30	8	31	1.87
32049253--32049495	94	2.6	94	98	0	477	29	30	8	31	1.86
32057416--32057578	56	2.9	56	85	1	220	31	12	22	33	1.92
32058593--32058636	19	2.4	19	85	7	56	50	0	9	40	1.34
32065720--32065763	20	2.2	20	87	0	61	18	25	20	36	1.95
32065760--32065805	21	2.2	21	88	0	65	28	23	13	34	1.92
32067910--32067943	12	2.8	12	95	0	59	23	20	8	47	1.78
32071582--32071857	46	5.8	49	72	11	184	27	18	29	24	1.98
32073608--32073653	10	4.6	10	88	0	74	15	30	17	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32075242--32075328	42	2.1	42	97	0	165	24	24	10	41	1.86
32078492--32078573	24	3.4	24	81	6	103	17	25	24	32	1.96
32089470--32089798	50	6.8	50	75	10	297	26	19	29	24	1.98
32089491--32089798	95	3.2	95	86	4	404	25	19	29	24	1.98
32092593--32092847	39	6.5	40	90	4	369	25	27	23	24	2.00
32092593--32092847	79	3.2	78	89	3	354	25	27	23	24	2.00
32094780--32094809	16	1.9	16	93	6	53	33	23	0	43	1.54
32095007--32095148	50	2.8	50	80	2	140	30	27	14	26	1.95
32097820--32097937	8	15.0	8	70	22	74	40	0	0	58	1.04
32097878--32097939	5	12.4	5	100	0	124	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373