genome.fa.s8.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  113  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36973417--36973544	43	3.0	43	85	7	172	28	10	25	35	1.90
36976797--36977018	40	5.6	40	91	2	342	22	22	26	28	1.99
36988902--36989163	40	6.6	40	93	1	429	23	22	25	27	2.00
36993248--36993319	32	2.3	32	82	2	92	16	29	33	20	1.95
36994968--36995042	28	2.7	28	83	8	98	30	30	10	28	1.90
36995053--36995128	40	1.9	40	91	0	125	32	28	15	22	1.95
36995336--36995374	21	1.9	20	84	5	51	38	20	0	41	1.53
36996845--36996913	6	11.3	6	73	14	61	50	14	17	17	1.78
36996866--36996965	31	3.2	31	85	0	137	49	14	18	19	1.80
36997476--36997928	27	16.8	27	86	5	576	43	7	19	29	1.78
36997922--36998102	27	6.7	26	81	8	148	29	8	22	39	1.84
36997989--36998106	54	2.2	54	87	3	166	31	10	19	38	1.85
36998097--36998167	27	2.6	27	88	0	106	28	23	18	29	1.98
36998016--36998129	54	2.1	54	81	3	131	29	12	20	37	1.89
37001625--37001853	42	5.3	42	79	6	251	29	28	16	26	1.97
37001737--37001828	48	1.9	48	93	4	159	28	26	15	30	1.96
37001823--37001961	37	3.8	36	81	8	149	26	29	17	26	1.97
37001782--37001961	74	2.4	74	82	10	206	27	28	16	27	1.97
37002863--37002930	32	2.2	32	89	2	102	19	29	32	19	1.96
37004719--37004794	40	1.9	40	86	5	109	32	28	15	22	1.95
37020562--37020746	79	2.3	82	83	7	229	24	27	22	24	2.00
37020543--37020746	40	5.1	40	81	8	229	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37028504--37028684	79	2.3	81	82	7	219	24	27	22	25	2.00
37028504--37028684	40	4.6	40	82	6	217	24	27	22	25	2.00
37034155--37034253	28	3.5	28	73	10	112	22	20	28	29	1.98
37034156--37034280	56	2.2	56	97	0	232	20	20	31	28	1.97
37034183--37034280	28	3.5	28	70	5	99	18	19	34	27	1.95
37041567--37041653	39	2.2	39	91	0	138	28	26	22	21	1.99
37044556--37044629	19	4.1	19	75	10	82	37	16	10	35	1.83
37044704--37044790	39	2.2	39	91	0	138	27	26	22	22	2.00
37051377--37051554	52	3.5	51	88	4	245	28	14	29	28	1.95
37057697--37057816	24	5.0	24	82	0	132	32	24	16	26	1.96
37060241--37060279	20	2.0	20	100	0	78	43	20	15	20	1.88
37062147--37062201	27	2.0	27	82	0	65	52	1	3	41	1.29
37074448--37074658	28	7.6	28	78	14	222	37	13	23	25	1.91
37074452--37074647	80	2.4	83	85	5	263	38	13	22	25	1.91
37074564--37074683	34	3.7	34	85	13	189	36	15	23	25	1.93
37074482--37074683	62	3.4	61	84	10	269	38	13	21	25	1.91
37076818--37076969	34	4.5	34	80	4	150	32	8	16	42	1.78
37076824--37076969	67	2.2	68	82	3	179	32	8	16	43	1.77
37077063--37077097	11	3.1	11	91	4	52	17	0	25	57	1.40
37078076--37078100	10	2.5	10	100	0	50	64	0	12	24	1.27
37080470--37080692	40	5.6	40	82	6	204	23	20	28	27	1.99
37080470--37080694	80	2.8	79	81	7	233	23	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37080548--37080727	79	2.3	80	81	3	204	24	20	28	26	1.99
37083334--37083457	61	2.0	61	96	0	230	29	12	16	41	1.85
37085531--37085854	27	12.0	26	75	8	177	31	10	17	39	1.84
37085511--37085846	81	4.1	81	75	9	240	31	10	18	39	1.85
37085592--37085834	54	4.5	54	77	5	215	31	9	18	40	1.82
37085843--37085918	27	2.8	27	87	0	107	31	23	13	31	1.93
37087148--37087290	34	4.2	33	73	7	92	32	8	14	44	1.75
37089826--37089947	34	3.6	34	81	6	135	30	10	20	38	1.87
37090075--37090104	11	2.6	11	94	5	51	20	0	20	60	1.37
37095645--37095722	31	2.5	31	93	2	131	26	24	17	30	1.97
37095942--37096011	25	2.8	25	91	0	104	22	24	25	27	2.00
37097023--37097155	27	5.0	26	81	5	158	28	9	21	41	1.83
37097154--37097245	27	3.4	27	85	5	123	40	6	22	30	1.79
37097018--37097259	27	9.0	27	76	8	120	32	7	21	38	1.82
37103927--37103965	11	3.6	11	82	6	53	35	10	17	35	1.84
37103926--37103967	21	2.0	21	95	0	75	35	9	19	35	1.84
37105182--37105296	27	4.3	26	90	5	140	36	23	21	18	1.95
37112957--37113140	40	4.6	40	81	6	221	25	22	26	25	2.00
37112957--37113140	80	2.3	80	86	3	246	25	22	26	25	2.00
37132146--37132288	52	2.8	51	90	4	227	30	30	13	25	1.94
37139622--37139673	26	2.0	26	85	7	70	36	17	5	40	1.73
37141311--37141491	50	3.7	49	81	9	190	23	30	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37141509--37141634	46	2.7	45	78	11	139	22	29	20	27	1.98
37146317--37146363	21	2.4	19	82	10	58	46	23	2	27	1.63
37148748--37148857	42	2.6	42	86	0	148	34	20	11	32	1.89
37149127--37149154	13	2.2	13	100	0	56	32	0	0	67	0.91
37155664--37155833	43	4.0	43	76	6	173	23	18	27	31	1.97
37157219--37157245	13	2.1	13	100	0	54	25	0	29	44	1.54
37157595--37157744	57	2.7	58	82	10	170	25	32	12	30	1.93
37157596--37157744	28	5.2	28	85	7	176	25	32	12	29	1.93
37159114--37159192	37	2.1	37	90	0	122	25	31	18	24	1.98
37159310--37159722	47	8.7	47	96	0	709	30	29	8	30	1.88
37159510--37159684	22	7.5	23	61	11	70	30	28	9	32	1.88
37172022--37172070	15	3.1	15	88	5	62	12	26	0	61	1.31
37172176--37172224	18	2.7	18	75	15	55	8	26	0	65	1.20
37176969--37177022	27	2.0	27	85	0	72	40	5	14	38	1.70
37177268--37177515	49	5.0	50	78	4	259	26	19	26	27	1.99
37180406--37180444	20	2.0	20	94	0	69	38	12	17	30	1.88
37180494--37180638	72	2.0	73	87	4	213	28	22	22	26	1.99
37180494--37180613	24	5.0	24	90	4	188	29	22	20	27	1.99
37184135--37184299	30	5.5	30	66	5	93	23	25	12	39	1.89
37184110--37184326	90	2.4	90	79	3	224	23	25	13	37	1.92
37184137--37184326	60	3.2	59	73	6	141	23	26	12	37	1.90
37184285--37184355	29	2.4	30	88	6	101	25	26	9	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37192133--37192174	21	2.0	21	85	0	57	28	9	35	26	1.88
37193375--37193470	47	2.0	47	91	0	156	34	11	22	31	1.90
37212570--37212614	24	1.9	24	86	4	65	44	13	8	33	1.75
37213710--37213976	41	6.5	41	83	2	286	36	22	20	21	1.95
37215274--37215371	49	2.0	49	100	0	196	36	4	14	44	1.64
37224740--37224860	39	3.1	39	93	2	199	21	25	29	23	1.99
37227982--37228036	14	3.9	14	73	4	56	50	27	0	21	1.49
37227982--37228041	22	2.8	21	77	7	66	51	26	0	21	1.48
37228175--37228274	35	2.9	34	77	12	105	20	0	26	54	1.45
37228209--37228288	28	2.9	27	77	5	79	16	0	28	55	1.42
37228266--37228326	14	4.4	14	76	13	63	18	0	29	52	1.45
37228257--37228355	35	2.8	33	77	13	83	17	1	30	51	1.52
37228300--37228378	7	11.1	7	72	16	56	18	1	36	43	1.59
37228474--37228511	7	5.3	7	87	6	58	15	2	36	44	1.61
37228474--37228511	15	2.6	14	91	4	58	15	2	36	44	1.61
37232675--37232754	27	3.0	27	81	5	99	35	21	23	20	1.96
37233446--37233618	27	6.4	27	85	2	222	26	19	19	35	1.95
37233446--37233614	81	2.1	81	89	0	257	26	18	19	36	1.95
37240306--37240357	27	2.0	26	84	3	68	34	21	26	17	1.95
37240219--37240376	67	2.3	68	90	4	237	32	22	26	18	1.97
37240956--37241017	27	2.3	27	86	2	81	37	17	19	25	1.94
37241012--37241260	27	9.2	27	84	4	162	25	20	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241011--37241259	81	3.1	81	84	5	324	25	20	17	35	1.95
37241011--37241259	54	4.6	54	87	1	329	25	20	17	35	1.95
37243094--37243334	40	6.1	40	86	2	290	26	28	21	22	1.99
37244577--37244701	53	2.4	52	91	2	196	16	21	9	52	1.71
37251237--37251514	40	7.0	40	88	3	350	26	28	21	23	1.99
37252761--37252886	53	2.4	53	90	1	198	16	21	9	52	1.72
37254257--37254484	27	8.4	27	88	0	312	32	14	16	36	1.89
37254257--37254521	27	9.9	27	84	4	124	33	15	15	34	1.90
37254477--37254574	27	3.7	26	75	11	83	42	20	16	20	1.89
37254935--37254993	18	3.3	18	78	0	64	23	20	15	40	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373