genome.fa.s8.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  96  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31065943--31066019	30	2.6	30	95	0	136	32	18	22	27	1.97
31066707--31066800	38	2.4	38	87	1	134	21	23	15	39	1.92
31067008--31067111	23	4.4	24	92	3	167	28	22	19	29	1.98
31067161--31067227	20	3.3	20	89	0	107	32	20	13	32	1.92
31069410--31069637	46	4.8	46	78	9	160	28	17	30	24	1.97
31069407--31069632	47	4.8	47	76	10	162	28	16	29	25	1.97
31076046--31076108	21	3.0	21	77	11	58	42	0	3	53	1.16
31076070--31076127	29	2.0	29	93	0	98	51	0	1	46	1.11
31076433--31076457	12	2.1	12	100	0	50	0	8	0	92	0.40
31079693--31079759	29	2.3	30	81	2	82	40	10	8	40	1.71
31087623--31087805	79	2.3	81	85	7	241	25	27	22	24	2.00
31087602--31087805	40	5.1	40	83	8	247	25	27	22	24	1.99
31089677--31089761	43	2.0	43	82	13	104	29	29	16	24	1.97
31094602--31094830	48	4.8	47	93	1	341	34	6	27	31	1.81
31094874--31094976	37	2.8	37	98	0	197	22	20	32	25	1.98
31098271--31098315	22	2.0	22	95	0	81	42	4	26	26	1.74
31098860--31098912	28	1.9	27	84	3	70	24	26	18	30	1.98
31101620--31101648	15	1.9	15	100	0	58	58	0	0	41	0.98
31101624--31101657	15	2.3	15	89	0	50	61	0	0	38	0.96
31101627--31101708	27	2.9	27	71	14	67	56	4	1	37	1.29
31101737--31101780	19	2.4	18	85	7	54	40	9	0	50	1.34
31114478--31114512	13	2.8	13	86	4	54	82	0	2	14	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31115091--31115146	13	4.5	13	80	13	73	37	1	14	46	1.55
31116854--31117026	46	3.7	46	76	11	183	21	20	27	30	1.98
31116851--31117021	93	1.8	93	89	2	272	21	20	28	29	1.98
31124331--31124503	46	3.7	46	76	10	190	21	20	27	30	1.98
31124328--31124498	93	1.8	93	91	0	279	21	21	28	29	1.98
31124728--31124765	19	2.0	20	85	15	53	36	0	23	39	1.55
31125824--31125884	28	2.2	27	91	2	95	31	18	13	37	1.88
31129082--31129198	27	4.3	27	84	0	144	26	22	16	35	1.95
31129080--31129198	54	2.2	54	86	3	168	26	21	16	34	1.95
31132306--31132379	37	2.0	37	100	0	148	29	21	10	37	1.88
31134082--31134128	23	2.0	23	87	0	67	19	4	31	44	1.70
31136267--31136328	28	2.2	28	88	5	90	24	16	33	25	1.95
31136647--31136932	27	10.6	27	78	11	160	41	20	9	29	1.83
31136647--31136786	53	2.6	54	84	3	167	38	19	11	30	1.87
31136751--31136928	81	2.2	81	84	1	221	44	19	7	28	1.77
31136751--31136932	54	3.4	53	83	5	204	44	20	7	28	1.77
31142878--31142961	44	1.9	44	90	0	132	32	13	27	27	1.93
31148167--31148307	64	2.2	64	87	2	194	34	10	17	38	1.84
31148508--31148549	22	1.9	22	85	0	57	23	16	26	33	1.96
31148515--31148557	22	2.0	22	90	9	70	20	13	27	37	1.91
31151482--31151520	8	4.9	8	87	0	60	41	20	23	15	1.90
31151482--31151529	16	3.0	16	84	0	60	39	20	25	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31151744--31151854	29	3.9	29	81	6	120	27	15	28	27	1.96
31155830--31155870	18	2.3	18	91	4	66	41	21	12	24	1.87
31157653--31157830	27	6.6	27	80	3	160	30	28	14	26	1.95
31157653--31157830	54	3.3	55	80	3	182	30	28	14	26	1.95
31165604--31165697	27	3.5	27	83	2	127	31	28	13	25	1.94
31188433--31188617	40	4.7	40	82	6	207	25	26	22	25	2.00
31188461--31188617	79	2.0	80	83	6	203	25	27	22	24	2.00
31191740--31191843	53	2.0	53	80	0	118	21	24	18	36	1.95
31214077--31214470	40	9.8	40	91	2	617	23	28	21	26	1.99
31214077--31214470	82	4.9	81	93	1	641	23	28	21	26	1.99
31214077--31214470	122	3.2	120	93	2	635	23	28	21	26	1.99
31218641--31218793	42	3.6	42	77	5	146	31	13	25	29	1.94
31219914--31219959	22	2.1	22	100	0	92	26	4	21	47	1.69
31219925--31219973	22	2.2	22	82	7	55	32	4	24	38	1.74
31229170--31229265	42	2.3	42	82	7	115	32	15	22	29	1.95
31230722--31230877	43	3.7	43	77	6	149	26	20	25	27	1.99
31230719--31230877	85	1.9	85	85	5	223	26	20	25	27	1.99
31251453--31251677	40	5.7	40	84	5	278	24	22	27	25	2.00
31251453--31251710	80	3.2	80	81	7	224	25	21	27	25	1.99
31251453--31251710	119	2.2	119	79	6	265	25	21	27	25	1.99
31259391--31259615	40	5.7	40	85	5	278	24	22	28	25	2.00
31259391--31259648	80	3.2	80	81	8	217	25	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31259391--31259648	119	2.2	119	80	6	274	25	21	27	24	1.99
31263202--31263236	16	2.2	16	89	0	52	51	5	8	34	1.56
31263863--31263960	39	2.5	39	88	0	151	43	22	5	28	1.74
31267739--31267886	46	3.2	46	88	0	224	33	16	25	25	1.95
31268238--31268475	44	5.2	45	73	11	149	31	20	21	26	1.98
31268237--31268983	143	5.3	142	85	3	914	31	19	21	26	1.98
31268524--31268651	45	2.9	44	70	4	123	30	20	21	27	1.98
31268237--31268976	283	2.6	283	84	3	945	31	20	21	26	1.98
31269868--31269923	27	2.0	28	82	3	69	16	1	7	75	1.11
31272642--31272695	23	2.2	25	83	9	76	33	5	0	61	1.19
31272784--31272815	13	2.3	15	89	10	50	40	0	0	59	0.97
31272913--31272978	18	3.3	20	74	19	66	34	3	3	59	1.28
31280569--31280602	17	1.9	18	94	5	61	17	5	0	76	0.98
31282044--31282085	22	2.0	21	85	4	57	30	9	4	54	1.53
31286475--31286558	38	2.2	38	85	4	107	5	20	0	73	1.03
31286509--31286575	27	2.5	27	83	13	86	7	20	0	71	1.10
31293414--31293638	40	5.7	40	91	1	312	26	27	23	23	2.00
31302879--31302992	40	2.8	39	79	11	131	36	20	22	20	1.95
31304469--31304652	40	4.6	40	84	2	244	24	26	23	25	2.00
31304433--31304652	80	2.8	79	84	4	257	25	26	23	25	2.00
31312590--31312809	40	5.6	40	79	5	232	25	26	23	25	2.00
31315233--31315271	18	2.2	18	95	0	69	33	0	15	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31319185--31319318	64	2.1	64	94	0	232	37	11	5	46	1.62
31319198--31319332	64	2.1	64	84	4	184	40	8	5	45	1.58
31319366--31319436	24	3.0	24	81	8	90	26	18	7	47	1.74
31319478--31320138	241	2.7	241	96	0	1216	34	18	14	33	1.90
31325001--31325040	17	2.4	16	83	4	53	35	10	0	55	1.34
31325927--31326008	31	2.5	33	80	7	96	14	4	19	60	1.51
31326078--31326197	43	2.8	43	83	0	159	28	27	20	23	1.99
31327133--31327191	27	2.1	28	81	9	68	61	11	0	27	1.31
31336865--31336943	37	2.1	37	100	0	158	35	7	11	45	1.69
31337170--31337205	19	1.9	19	88	5	56	66	0	0	33	0.92
31339014--31339409	27	14.6	27	82	5	365	38	21	9	30	1.85
31339455--31339615	27	6.0	27	86	0	187	36	17	19	26	1.94
31339446--31339614	81	2.1	81	82	0	212	37	15	18	27	1.92
31339448--31339614	54	3.1	54	86	0	226	37	16	19	27	1.92
31339821--31339890	25	2.8	25	87	6	106	24	27	22	25	2.00
31339821--31339903	25	3.4	24	83	9	105	27	24	22	25	2.00
31339821--31339915	50	1.9	50	80	8	113	26	25	23	25	2.00
31351842--31352039	43	4.7	43	81	7	192	26	13	26	33	1.93
31351842--31352019	86	2.1	85	83	5	216	26	13	26	33	1.93
31358025--31358231	55	3.9	54	78	2	202	20	24	17	37	1.94
31359644--31359813	40	4.3	40	90	0	225	26	27	21	24	1.99
31359688--31359866	80	2.2	80	81	3	191	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31366187--31366220	9	3.9	9	88	3	52	32	20	11	35	1.89
31368307--31368367	25	2.4	25	83	5	68	34	9	11	44	1.74
31370878--31370919	22	2.0	21	86	9	59	28	9	4	57	1.51
31379862--31380075	110	2.0	109	83	0	275	26	16	23	33	1.96
31408971--31409148	27	6.6	27	83	3	196	30	28	15	26	1.96
31408992--31409147	82	1.9	81	86	3	224	30	28	15	26	1.96
31417105--31417282	27	6.6	27	84	3	205	29	28	15	26	1.96
31417126--31417281	82	1.9	81	88	3	233	29	28	15	26	1.96
31439795--31439982	40	4.7	40	92	3	317	25	27	22	24	2.00
31443416--31443453	5	7.6	5	100	0	76	21	0	0	78	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373