genome.fa.s8.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  140  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46377203--46377298	27	3.6	27	81	0	102	19	19	22	37	1.94
46377277--46377334	26	2.2	26	81	0	71	15	15	22	46	1.83
46381581--46381797	40	5.5	40	89	3	298	24	29	23	22	1.99
46384097--46384206	27	4.1	27	80	2	123	40	22	7	30	1.81
46384187--46384412	27	8.4	27	82	4	242	36	17	18	27	1.93
46384160--46384412	81	3.1	81	81	3	206	37	17	16	27	1.92
46384586--46384648	27	2.3	27	83	0	81	22	22	19	36	1.95
46384796--46384861	33	2.0	34	90	3	107	25	22	27	24	2.00
46389928--46389967	21	1.9	21	84	0	53	37	17	2	42	1.63
46397687--46397725	20	1.9	21	84	5	53	23	5	23	48	1.70
46399152--46399232	42	1.9	42	80	9	94	33	1	0	65	1.01
46399176--46399233	25	2.4	25	77	19	68	31	0	0	68	0.89
46411575--46411702	44	2.9	44	83	1	148	31	14	26	28	1.95
46411689--46412240	89	6.2	88	75	10	482	30	19	22	27	1.98
46411924--46412056	44	3.0	44	78	6	133	32	13	24	29	1.94
46411543--46412364	354	2.3	354	90	1	1274	30	17	23	28	1.97
46412281--46412471	44	4.3	44	87	0	274	29	14	27	28	1.95
46412289--46412497	88	2.4	88	85	2	276	31	14	27	25	1.95
46415415--46415508	20	5.9	15	66	27	52	31	5	1	61	1.25
46415450--46415512	29	2.2	30	86	11	87	33	3	0	63	1.10
46415471--46415506	11	3.3	11	92	7	56	36	0	0	63	0.94
46419770--46419936	46	3.6	47	78	4	178	28	17	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46426436--46426556	46	2.6	48	88	2	165	30	18	28	23	1.97
46429460--46429538	37	2.1	37	88	4	115	26	30	18	24	1.98
46429657--46430118	47	9.7	47	94	1	764	28	30	8	32	1.88
46429657--46430097	192	2.3	190	94	1	760	28	30	8	32	1.87
46429657--46430118	239	1.9	235	92	2	782	28	30	8	32	1.88
46436479--46436554	38	2.0	38	100	0	152	23	21	21	34	1.97
46440833--46440869	6	5.8	6	93	6	56	81	5	0	13	0.86
46445059--46445281	40	5.6	40	85	3	245	24	20	27	27	1.99
46445059--46445316	80	3.3	79	81	4	261	25	20	27	26	1.99
46445135--46445316	79	2.3	80	85	1	242	25	20	27	26	1.99
46460539--46460579	22	1.9	22	90	5	66	21	26	39	12	1.89
46461784--46461997	46	4.6	46	76	10	186	24	27	19	29	1.98
46461830--46462000	94	1.8	92	85	5	236	24	27	19	28	1.98
46481495--46481540	21	2.2	21	96	0	83	32	17	13	36	1.88
46485410--46485469	30	2.0	30	87	6	86	23	35	23	18	1.96
46489503--46489563	20	3.0	20	80	0	68	40	21	27	9	1.85
46489595--46490031	217	2.0	217	94	0	757	34	18	11	35	1.86
46501843--46501896	22	2.5	22	84	6	65	31	24	25	18	1.97
46502321--46502705	27	14.2	27	80	3	283	31	8	19	40	1.82
46502434--46502743	81	3.8	81	74	4	268	30	9	19	41	1.82
46508162--46508365	53	3.8	54	77	1	212	20	23	18	37	1.94
46508172--46508368	109	1.8	109	87	1	297	19	22	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46517869--46518024	43	3.6	43	75	6	154	30	21	17	30	1.96
46537701--46538217	258	2.0	258	97	0	982	31	19	16	31	1.94
46538936--46538989	26	2.0	27	85	3	74	27	31	16	24	1.96
46538963--46539041	32	2.5	32	81	6	97	30	27	17	24	1.97
46540648--46540726	37	2.1	37	90	0	122	25	31	18	24	1.98
46540848--46541246	47	8.6	44	88	8	240	30	29	9	30	1.88
46540844--46541246	94	4.3	94	89	7	628	30	29	8	31	1.88
46541081--46541161	22	3.5	23	66	11	67	30	28	9	30	1.89
46540844--46541249	141	3.0	132	89	8	634	30	29	8	31	1.88
46540974--46541245	47	5.8	47	97	0	517	30	28	9	31	1.88
46546604--46546664	30	2.0	30	83	0	77	31	22	8	37	1.84
46552469--46552553	32	2.7	32	83	0	116	28	25	18	27	1.98
46564184--46564436	47	5.4	47	90	0	371	28	30	8	32	1.86
46573118--46573264	55	2.7	53	78	2	159	18	23	20	38	1.94
46576145--46576203	30	2.0	30	82	0	73	38	6	27	27	1.81
46576820--46577154	150	2.2	151	93	0	564	26	19	23	30	1.98
46576814--46577148	50	6.7	50	77	3	298	26	18	24	30	1.98
46577357--46577388	16	2.0	16	93	0	55	46	0	18	34	1.49
46584369--46584472	53	2.0	52	86	1	145	21	26	15	36	1.93
46585549--46585621	33	2.2	33	97	0	137	15	39	26	19	1.90
46589642--46589818	40	4.4	40	80	6	200	27	27	21	24	1.99
46589642--46589818	80	2.2	79	86	5	232	27	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46593491--46593718	46	5.0	46	90	1	332	22	24	14	38	1.92
46594426--46594463	17	2.2	18	90	4	60	23	28	31	15	1.96
46594661--46594721	27	2.3	27	82	0	77	39	24	6	29	1.80
46594717--46594857	27	5.2	27	86	0	183	36	15	20	27	1.93
46595484--46595576	27	3.4	27	77	14	84	21	19	19	39	1.92
46595694--46595818	6	20.3	6	72	16	96	19	18	13	48	1.80
46595694--46595798	31	3.6	28	70	23	76	19	20	13	47	1.82
46595694--46595818	19	6.8	18	77	13	96	19	18	13	48	1.80
46595697--46595801	37	2.8	37	84	4	140	19	20	13	47	1.82
46595980--46596005	13	2.0	13	100	0	52	23	7	15	53	1.67
46598559--46598607	3	17.3	3	76	19	52	67	0	2	30	1.02
46598560--46598603	11	3.9	11	85	14	54	65	0	2	31	1.05
46598559--46598599	14	2.9	14	80	20	50	65	0	2	31	1.05
46600550--46600665	34	3.4	34	83	5	137	24	25	25	25	2.00
46605397--46605521	29	4.3	29	90	2	180	28	32	15	23	1.95
46605404--46605518	59	2.0	57	89	3	176	26	33	16	23	1.96
46609933--46610020	45	2.0	45	100	0	176	29	30	18	21	1.97
46610844--46610897	15	3.6	15	82	7	56	12	16	12	57	1.65
46610818--46610897	30	2.7	30	75	7	81	13	17	13	55	1.70
46613291--46613515	46	4.9	46	83	4	267	21	20	28	29	1.98
46614896--46615066	93	1.8	93	89	0	270	22	20	27	29	1.99
46614900--46615071	46	3.7	46	74	13	172	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46617185--46617276	45	2.0	45	100	0	184	29	30	17	22	1.97
46618082--46618137	15	3.7	15	83	7	78	14	14	10	60	1.58
46630491--46630543	27	2.0	27	85	7	72	33	11	22	32	1.90
46649918--46649951	16	2.1	16	88	5	50	73	8	8	8	1.25
46652883--46652942	31	1.9	32	89	3	95	30	15	28	26	1.96
46652918--46653051	56	2.4	56	91	0	214	29	14	23	33	1.94
46652916--46653081	56	3.0	56	83	5	210	27	15	25	32	1.95
46657046--46657150	27	3.9	27	85	9	126	34	20	24	20	1.96
46657567--46657596	16	1.9	15	93	6	51	3	20	23	53	1.60
46658519--46658620	31	3.3	31	83	4	125	48	13	16	21	1.81
46658760--46658858	27	3.7	26	85	5	117	37	21	22	19	1.94
46659017--46659081	22	3.0	22	77	8	69	35	21	23	20	1.96
46659507--46659728	27	8.3	27	84	0	275	25	20	19	34	1.96
46659537--46659757	54	4.1	54	83	3	160	27	19	18	34	1.95
46659586--46659757	81	2.1	81	81	4	204	27	18	18	35	1.94
46659778--46659842	27	2.4	27	86	0	94	32	12	16	38	1.86
46659767--46660108	81	4.2	81	84	3	278	30	9	21	38	1.84
46659767--46660108	54	6.3	54	85	2	373	30	9	21	38	1.84
46659821--46660108	27	10.6	27	87	0	378	30	8	21	39	1.83
46664032--46664175	43	3.3	43	92	0	234	33	15	19	31	1.93
46680701--46680799	48	2.1	48	96	0	180	32	10	17	40	1.83
46681836--46681986	43	3.5	43	95	1	259	31	14	21	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688430--46688497	29	2.3	29	82	5	84	27	29	13	29	1.94
46688319--46688646	174	1.9	174	96	0	611	31	25	14	29	1.94
46688606--46688677	29	2.5	29	81	0	90	30	30	12	26	1.93
46696348--46696415	29	2.3	29	82	5	84	27	29	13	29	1.94
46696237--46696564	174	1.9	174	96	0	611	31	25	14	29	1.94
46696524--46696595	29	2.5	29	81	0	90	30	30	12	26	1.93
46704459--46704555	40	2.4	41	85	10	121	25	28	17	27	1.98
46711928--46712017	40	2.2	40	84	7	112	27	24	16	31	1.97
46730350--46730389	19	2.1	19	100	0	80	25	0	12	62	1.30
46730509--46730675	43	3.9	44	80	4	180	29	14	23	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373