Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  163  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54516939--54517104
56
2.9
57
85
5
178
25
13
25
34
1.93
54519008--54519123
27
4.3
26
88
5
106
36
22
22
18
1.95
54519032--54519121
28
3.3
28
90
4
139
35
22
22
20
1.96
54519008--54519123
54
2.2
53
85
3
151
36
22
22
18
1.95
54532418--54532764
47
7.4
47
92
1
525
31
8
30
29
1.87
54535555--54535583
14
2.0
15
93
6
51
51
20
0
27
1.47
54549724--54549784
29
2.1
28
85
8
79
32
11
24
31
1.91
54549777--54549870
29
3.3
29
88
5
113
27
14
34
23
1.94
54549736--54549845
58
1.9
58
82
0
139
30
13
29
26
1.94
54552670--54552701
16
2.0
16
93
0
55
50
34
6
9
1.60
54554193--54554224
16
2.0
16
93
0
55
6
21
43
28
1.77
54567454--54567553
27
3.6
28
87
2
130
27
12
28
33
1.92
54567484--54567567
27
3.0
27
87
5
96
29
11
25
33
1.91
54578497--54578529
16
2.1
16
94
0
57
51
27
3
18
1.60
54579998--54580074
29
2.7
29
83
0
100
25
16
27
29
1.97
54584502--54584733
49
4.7
49
82
5
295
28
27
18
25
1.98
54584502--54584733
100
2.3
98
85
2
311
28
27
18
25
1.98
54591364--54591423
31
1.9
32
89
3
95
30
20
18
31
1.96
54596480--54596595
44
2.6
44
82
4
135
36
29
15
18
1.92
54599836--54600125
38
6.9
38
69
19
175
31
14
22
30
1.94
54599862--54600075
48
4.7
48
75
12
200
33
14
21
30
1.93
54599912--54600118
85
2.4
85
91
0
333
32
14
22
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54606151--54606284
48
2.8
48
89
1
198
31
14
23
31
1.94
54606248--54606324
38
2.0
38
92
0
127
28
14
27
29
1.95
54609178--54609220
15
2.8
15
89
3
59
62
6
11
18
1.50
54611405--54611613
40
5.2
40
86
2
228
27
24
23
24
2.00
54611436--54611613
79
2.2
80
86
4
252
29
25
21
23
1.99
54619486--54619710
40
5.7
40
90
1
303
26
27
23
22
1.99
54624547--54624603
21
2.7
20
81
5
60
28
1
31
38
1.67
54624567--54624621
28
2.0
28
85
7
76
27
1
32
38
1.67
54626861--54626905
14
3.5
14
77
22
62
44
13
4
37
1.64
54626854--54626904
24
2.1
24
96
0
93
45
9
3
41
1.56
54627745--54627787
21
2.1
21
82
4
52
41
4
9
44
1.57
54627802--54627848
23
2.0
23
95
0
85
42
2
12
42
1.55
54627805--54627864
23
2.6
22
82
12
68
48
1
10
40
1.47
54628157--54628254
49
2.0
49
95
0
178
41
13
1
43
1.50
54628393--54628434
16
2.6
17
81
11
52
35
0
2
61
1.09
54628595--54628890
9
33.6
9
77
7
214
47
14
1
36
1.51
54628591--54628749
44
3.6
44
93
0
273
47
13
1
37
1.51
54628614--54628890
35
7.9
35
78
8
197
48
14
1
36
1.51
54628693--54628873
62
2.9
62
80
8
199
47
14
1
37
1.51
54634039--54634067
14
2.1
14
93
6
51
34
0
10
55
1.34
54634479--54634523
21
2.1
21
87
0
63
31
22
42
4
1.73
54634488--54634530
21
2.0
21
86
0
59
25
23
48
2
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54634896--54635027
43
3.0
43
79
9
160
32
20
21
25
1.97
54651770--54652056
40
7.7
40
85
12
373
31
20
26
21
1.98
54651966--54652056
39
2.3
40
92
1
148
32
20
27
18
1.96
54660403--54660670
40
6.7
40
95
0
473
30
20
27
22
1.98
54665907--54666167
40
6.6
40
86
7
297
25
21
27
25
1.99
54665905--54666167
39
6.7
40
84
8
312
25
21
27
25
1.99
54665907--54666167
79
3.3
80
84
8
313
25
21
27
25
1.99
54665906--54666200
79
3.7
77
79
11
271
26
21
27
24
1.99
54670995--54671063
30
2.3
30
87
0
93
40
10
23
26
1.86
54671094--54671246
30
5.1
30
75
8
116
37
13
24
24
1.91
54673909--54674086
27
6.6
27
83
3
205
26
15
28
29
1.96
54673910--54674065
82
1.9
81
88
3
233
26
15
28
29
1.96
54673906--54674086
82
2.2
81
83
2
229
27
15
27
29
1.96
54679998--54680056
30
2.1
29
84
15
79
37
3
6
52
1.45
54684298--54684424
43
3.0
42
79
9
166
22
22
20
34
1.97
54684788--54684830
21
2.0
21
86
0
59
2
48
23
25
1.62
54684795--54684839
21
2.1
21
87
0
63
4
42
22
31
1.73
54685250--54685278
13
2.1
14
93
6
51
55
10
0
34
1.34
54690400--54690692
9
33.6
9
74
8
196
36
1
14
47
1.52
54690438--54690667
17
13.4
17
73
10
96
37
1
13
48
1.50
54690471--54690670
34
5.5
36
77
14
171
37
1
14
47
1.50
54690541--54690704
43
3.8
43
81
11
167
37
1
14
46
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54690393--54690692
104
2.9
104
78
11
317
36
1
14
47
1.51
54690851--54690890
16
2.6
16
88
4
55
60
2
0
37
1.11
54691028--54691125
49
2.0
49
95
0
178
43
1
13
41
1.50
54691031--54691137
49
2.2
47
88
6
144
44
1
14
39
1.55
54691430--54691474
22
2.0
22
95
0
81
44
13
2
40
1.56
54694405--54694459
19
2.7
21
83
8
69
40
29
1
29
1.67
54694741--54694780
21
1.9
21
84
0
53
47
20
2
30
1.63
54705913--54706207
9
33.6
9
74
11
209
36
1
14
47
1.51
54705920--54706206
26
10.9
26
75
9
165
36
1
14
47
1.51
54705961--54706223
35
7.5
35
80
8
198
37
1
13
47
1.51
54706053--54706211
44
3.6
44
93
0
264
36
1
13
48
1.51
54706546--54706640
49
2.0
48
93
2
163
43
1
13
42
1.51
54706545--54706652
49
2.3
47
84
9
137
44
1
13
39
1.55
54706948--54706994
23
2.0
23
95
0
85
42
12
2
42
1.55
54710030--54710101
28
2.5
28
82
12
85
37
33
1
27
1.66
54710321--54710361
14
2.9
14
81
0
55
41
41
0
17
1.49
54714903--54715152
40
6.3
41
87
3
300
23
23
27
26
2.00
54723079--54723303
40
5.7
40
86
2
276
23
22
27
27
1.99
54729505--54729576
20
3.6
20
74
7
74
27
20
16
34
1.95
54729512--54729618
40
2.7
40
89
1
162
28
22
15
32
1.95
54733615--54733779
42
3.9
42
81
9
183
32
25
15
26
1.96
54737320--54737430
40
2.8
40
83
1
98
25
28
23
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54737343--54737526
40
4.6
40
89
4
221
23
25
25
26
2.00
54737373--54737524
40
3.8
41
90
6
222
24
25
25
25
2.00
54737373--54737524
81
1.9
80
90
4
243
24
25
25
25
2.00
54745391--54745585
41
4.8
41
88
3
245
24
25
25
24
2.00
54745364--54745585
41
5.6
40
86
3
243
24
25
25
24
2.00
54745364--54745585
81
2.8
79
82
4
241
24
25
25
24
2.00
54748946--54748984
18
2.2
18
86
13
55
2
2
17
76
1.01
54749156--54749201
22
2.1
22
100
0
92
43
13
21
21
1.86
54753840--54753891
24
2.2
24
89
0
77
55
9
1
32
1.43
54755687--54755871
40
4.7
40
84
7
227
23
22
28
25
1.99
54755687--54755869
79
2.3
81
85
7
241
24
22
27
25
2.00
54755688--54755904
79
2.7
78
76
12
210
25
21
27
25
1.99
54760419--54760502
43
2.0
43
87
0
123
26
32
19
22
1.97
54760714--54760759
22
2.1
22
87
0
65
47
10
4
36
1.58
54764557--54764590
15
2.3
15
94
0
59
26
5
35
32
1.81
54765034--54765067
17
2.0
17
94
0
59
20
11
8
58
1.59
54769199--54769308
26
4.2
26
95
0
175
36
23
5
34
1.78
54773422--54773474
26
2.0
26
82
7
63
24
16
20
37
1.93
54774959--54775069
26
4.3
26
97
0
186
36
24
5
33
1.78
54779565--54779598
10
3.4
10
87
0
50
38
0
5
55
1.24
54781079--54781119
19
2.2
19
86
4
57
70
4
2
21
1.18
54781045--54781118
31
2.4
31
78
13
82
66
4
2
27
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54787241--54787319
14
5.4
14
71
11
50
44
26
1
27
1.62
54787232--54787313
21
3.7
21
75
12
83
42
29
1
26
1.63
54787216--54787309
46
2.0
46
93
0
161
40
27
2
29
1.68
54787480--54787656
41
4.4
40
85
4
214
19
22
21
37
1.95
54787480--54787679
41
4.9
40
82
7
99
20
22
21
37
1.95
54788044--54788077
17
2.0
17
100
0
68
52
5
0
41
1.25
54795830--54795864
18
2.0
17
88
5
52
42
25
0
31
1.55
54796934--54797129
42
4.7
42
84
3
243
30
25
14
29
1.95
54796934--54797129
85
2.3
84
86
5
263
30
25
14
29
1.95
54800157--54800360
40
5.2
40
91
4
308
26
26
22
24
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373