genome.fa.s8.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  205  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69336358--69336552	55	3.6	54	77	4	151	37	18	23	20	1.94
69336358--69336564	53	3.8	53	77	5	191	37	17	23	20	1.94
69339238--69339266	12	2.3	13	94	5	51	48	3	0	48	1.18
69340666--69340754	45	2.0	45	84	8	119	53	2	0	43	1.13
69340620--69340781	57	2.8	57	86	9	197	54	1	1	42	1.16
69340766--69340821	21	2.7	21	97	0	103	62	1	3	32	1.23
69356604--69356673	34	2.1	34	100	0	140	45	17	8	28	1.77
69357527--69357694	43	3.9	43	79	6	187	32	27	16	23	1.96
69363663--69363770	26	4.2	26	93	0	189	36	24	7	32	1.83
69365935--69366125	48	4.0	48	83	2	240	17	17	28	35	1.93
69365938--69366123	96	1.9	96	87	0	273	17	17	29	35	1.93
69368281--69368314	14	2.5	13	86	9	50	47	0	8	44	1.34
69379871--69379895	13	1.9	13	100	0	50	16	28	40	16	1.89
69397568--69397884	46	6.7	48	74	12	223	28	18	29	23	1.98
69397571--69397885	47	6.7	49	72	18	174	28	18	29	23	1.98
69399575--69399653	37	2.1	37	85	0	104	26	30	17	25	1.97
69399771--69399879	49	2.3	47	93	4	182	31	31	7	30	1.85
69403366--69403666	40	7.5	40	83	3	313	24	27	23	24	2.00
69403974--69404052	29	2.7	29	86	5	106	27	32	15	24	1.95
69404034--69404136	43	2.4	43	98	0	197	26	35	16	21	1.94
69405994--69406072	37	2.1	37	88	0	113	25	30	18	25	1.98
69406190--69406298	49	2.3	47	95	4	191	30	31	7	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69411210--69411253	22	2.0	22	86	8	63	2	20	2	75	1.03
69412687--69412823	60	2.3	60	81	8	145	27	20	26	25	1.99
69413854--69413959	43	2.5	42	82	10	119	23	19	26	30	1.98
69422293--69422449	43	3.7	43	80	7	160	23	18	26	31	1.97
69422743--69422872	64	2.0	64	98	0	251	19	8	23	49	1.75
69434350--69434497	64	2.2	68	78	10	160	31	18	29	20	1.96
69434374--69434558	67	2.9	64	75	8	178	28	17	31	22	1.97
69455328--69455377	25	2.0	25	100	0	100	40	16	16	28	1.89
69480551--69480589	21	1.9	20	94	5	69	46	23	0	30	1.53
69487937--69487997	30	2.0	30	83	0	77	29	24	6	39	1.80
69495372--69495540	46	3.7	45	74	10	130	27	30	17	23	1.97
69505777--69505946	83	2.0	83	91	0	277	31	18	20	30	1.96
69513716--69513896	49	3.7	49	78	8	147	26	27	19	26	1.99
69518138--69518192	24	2.3	24	87	0	83	32	25	5	36	1.79
69524094--69524330	42	5.7	42	79	7	252	32	25	16	24	1.96
69524095--69524330	82	2.8	82	87	3	321	33	25	16	25	1.96
69530131--69530195	22	2.8	23	79	6	60	67	4	1	26	1.18
69530152--69530206	29	1.9	28	85	10	76	69	1	1	27	1.09
69533044--69533265	67	3.4	64	76	9	214	31	15	28	23	1.95
69559189--69559219	11	2.8	11	100	0	62	64	0	9	25	1.24
69559324--69559364	22	1.9	21	85	14	57	63	2	9	24	1.37
69560127--69560158	10	3.3	10	95	4	57	62	0	6	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69560154--69560216	27	2.3	26	76	10	63	50	11	0	38	1.38
69560183--69560212	15	2.0	15	93	0	51	40	10	0	50	1.36
69572230--69572537	39	7.9	39	94	0	517	22	29	26	21	1.99
69573413--69573472	31	1.9	31	96	0	111	55	6	8	30	1.55
69576350--69576495	27	5.4	27	90	0	211	35	20	19	23	1.96
69577131--69577181	27	1.9	26	84	4	66	23	27	13	35	1.93
69581564--69581733	46	3.7	46	76	10	184	22	18	27	30	1.98
69581558--69581728	93	1.8	93	92	0	288	22	19	28	29	1.98
69581958--69581995	19	2.0	20	85	15	53	36	0	23	39	1.55
69599975--69600004	13	2.3	13	94	0	51	13	33	33	20	1.91
69616497--69616679	79	2.3	81	84	7	232	25	27	22	24	2.00
69616495--69616679	40	4.7	40	83	7	234	25	28	22	23	2.00
69624628--69624810	79	2.3	81	83	7	223	25	27	22	24	2.00
69624607--69624810	40	5.1	40	81	8	229	25	27	22	25	2.00
69626733--69626770	19	2.0	20	85	15	53	39	23	0	36	1.55
69627000--69627170	93	1.8	93	93	0	297	28	29	21	21	1.98
69626995--69627167	46	3.7	46	80	10	208	28	28	20	21	1.98
69627590--69627649	30	2.0	30	83	0	75	33	23	5	38	1.76
69628478--69628649	46	3.7	48	83	9	207	23	30	19	26	1.98
69633301--69633365	16	4.4	16	66	25	52	20	27	0	52	1.47
69633285--69633370	43	2.0	43	95	0	154	23	25	0	51	1.49
69634643--69634694	26	2.1	24	82	7	59	48	7	1	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69643012--69643255	131	1.9	131	92	0	407	22	18	19	39	1.92
69645018--69645110	30	3.1	30	85	0	132	26	19	36	17	1.94
69645553--69645807	61	4.2	61	78	8	214	33	13	23	29	1.93
69645552--69645807	122	2.1	122	78	2	273	33	14	23	28	1.93
69647697--69647756	30	2.0	30	83	0	75	40	6	23	30	1.80
69649983--69650024	21	2.0	21	85	0	57	19	35	16	28	1.93
69653725--69653848	64	2.0	63	87	7	180	42	16	16	25	1.87
69665743--69665881	40	3.5	40	92	4	239	26	18	25	28	1.98
69671995--69672103	37	2.9	37	94	0	182	25	32	19	22	1.97
69672229--69672777	48	11.3	48	93	1	909	32	27	6	34	1.81
69675101--69675197	42	2.3	41	82	8	113	24	18	24	31	1.97
69675101--69675236	43	3.2	41	79	11	123	27	18	22	31	1.97
69675115--69675205	42	2.1	43	85	4	121	25	16	24	34	1.95
69675518--69675542	8	3.1	8	100	0	50	28	0	12	60	1.32
69676728--69676812	43	2.0	42	82	11	102	35	16	18	29	1.93
69683614--69683667	17	3.2	17	97	0	99	38	27	14	18	1.90
69696244--69696416	46	3.7	46	77	11	192	21	19	28	30	1.98
69696241--69696411	93	1.8	93	91	2	281	21	19	29	29	1.98
69696641--69696678	19	2.0	20	85	15	53	36	0	23	39	1.55
69699672--69699843	93	1.8	93	91	0	281	27	28	22	20	1.99
69699665--69699840	46	3.8	46	77	10	187	28	28	22	20	1.98
69702227--69702280	29	2.0	26	89	10	81	61	16	12	9	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69702230--69702308	15	5.4	15	77	10	83	59	12	16	11	1.61
69705250--69705425	46	3.8	46	76	10	187	29	27	21	21	1.98
69705257--69705428	93	1.8	93	91	0	281	28	27	22	21	1.99
69709183--69709361	46	3.8	49	76	13	180	29	27	21	22	1.99
69709190--69709361	93	1.8	93	88	0	263	28	27	21	22	1.99
69711746--69711825	15	5.4	15	79	7	74	58	12	16	12	1.63
69714149--69714320	40	4.3	40	93	2	276	24	27	22	25	2.00
69722076--69722253	40	4.5	40	89	2	252	24	27	22	25	2.00
69725859--69726030	93	1.8	93	92	0	290	28	29	20	20	1.98
69725860--69726027	46	3.6	45	79	13	189	29	29	20	20	1.98
69732701--69732876	46	3.8	46	76	7	185	21	21	28	28	1.98
69732698--69732868	93	1.8	93	92	0	288	21	21	28	28	1.99
69738763--69738796	18	1.9	18	88	5	52	29	14	14	41	1.86
69742403--69742465	28	2.2	29	88	2	101	28	31	14	25	1.95
69742680--69742722	16	2.6	18	82	17	58	11	18	18	51	1.76
69752417--69752495	37	2.1	37	88	4	115	24	32	18	24	1.97
69752614--69753122	47	10.8	47	95	0	901	29	29	8	32	1.88
69752614--69753122	237	2.2	235	95	0	901	29	29	8	32	1.88
69754526--69754604	37	2.1	37	90	0	122	25	31	18	24	1.98
69754723--69755186	47	9.8	47	94	1	802	29	29	8	32	1.87
69754723--69755186	96	4.9	94	95	1	802	29	29	8	32	1.87
69754723--69755186	143	3.3	143	95	1	801	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69757041--69757160	56	2.1	56	96	0	222	23	23	9	44	1.82
69757811--69757901	44	2.1	44	93	0	155	39	4	16	39	1.69
69760760--69761018	46	5.5	47	69	18	164	28	17	29	23	1.97
69761862--69761945	42	2.0	42	92	0	141	14	25	35	25	1.93
69772073--69772172	46	2.2	44	85	7	139	27	17	31	25	1.97
69783480--69783594	43	2.7	43	77	10	119	32	26	19	22	1.97
69790420--69790472	25	2.2	25	83	12	67	43	24	0	32	1.55
69792278--69792488	50	4.2	50	78	4	201	30	12	17	39	1.86
69792300--69792488	100	1.9	100	84	2	254	30	11	17	40	1.85
69794631--69794869	64	3.6	65	83	6	209	24	28	15	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373