genome.fa.s8.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  110  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36146329--36146391	20	3.2	19	74	17	56	7	23	20	47	1.76
36147062--36147095	17	2.0	17	100	0	68	29	17	11	41	1.85
36150703--36150930	40	5.7	40	91	3	361	25	26	22	25	2.00
36150670--36150926	80	3.2	80	91	3	378	25	26	22	25	2.00
36159688--36159859	40	4.3	40	88	2	222	25	27	21	25	1.99
36159690--36159912	40	5.6	39	83	5	216	25	27	21	25	1.99
36159688--36159912	80	2.8	79	80	7	240	25	27	21	25	1.99
36159844--36159921	40	1.9	41	82	10	97	26	28	20	24	1.99
36167622--36167791	40	4.3	40	87	3	209	26	28	20	25	1.99
36174389--36174527	43	3.2	43	74	3	111	30	28	19	22	1.98
36174919--36175065	70	2.1	69	91	1	231	37	14	12	36	1.83
36179947--36180059	58	2.0	57	82	5	138	32	22	15	30	1.94
36196262--36196286	2	12.5	2	100	0	50	48	0	52	0	1.00
36214957--36214991	18	1.9	18	100	0	70	40	11	11	37	1.77
36215810--36215995	55	3.4	54	79	7	207	23	24	16	35	1.95
36223102--36223148	24	2.0	24	91	0	76	36	2	38	23	1.67
36224573--36224678	27	3.9	28	80	9	112	18	21	19	39	1.92
36224573--36224679	54	2.0	54	83	3	135	18	21	19	40	1.92
36237881--36238107	48	4.7	48	80	8	239	25	19	28	26	1.99
36237888--36238107	96	2.3	96	84	6	268	25	19	29	26	1.98
36237881--36238198	48	6.9	48	73	13	236	25	19	27	27	1.99
36241808--36242025	40	5.5	40	91	1	332	25	27	23	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36244925--36244983	29	2.0	29	96	0	109	55	3	8	32	1.46
36244934--36244983	16	3.3	16	70	16	52	56	4	8	32	1.47
36245697--36245754	29	1.9	31	83	13	77	46	3	18	31	1.66
36254168--36254404	49	4.8	49	83	5	300	24	18	27	28	1.98
36254132--36254445	48	6.4	50	81	6	317	26	18	28	27	1.98
36259119--36259247	55	2.3	55	80	2	152	27	28	27	16	1.97
36261281--36261309	7	4.3	7	95	4	51	24	0	0	75	0.80
36268042--36268092	23	2.3	23	93	3	86	31	25	23	19	1.98
36279302--36279355	20	2.7	19	72	8	54	33	0	1	64	1.04
36288844--36288928	43	2.0	43	100	0	170	20	9	30	40	1.84
36290270--36290307	20	1.9	20	94	0	67	26	23	34	15	1.95
36292214--36292254	19	2.2	19	100	0	82	39	26	14	19	1.90
36306888--36306949	24	2.6	24	80	7	72	38	19	20	20	1.93
36306916--36306984	24	2.7	26	86	4	88	33	17	23	26	1.96
36308565--36308618	22	2.4	23	90	3	83	16	29	22	31	1.96
36308787--36308859	25	2.8	25	79	4	74	39	6	13	39	1.72
36309951--36310011	20	3.0	20	70	13	54	37	4	11	45	1.62
36312181--36312221	20	2.0	20	95	0	73	36	17	7	39	1.77
36315466--36315676	40	5.3	40	86	5	230	23	21	27	27	1.99
36333002--36333172	37	4.5	37	76	15	152	25	28	20	25	1.99
36341151--36341333	40	4.6	40	83	6	221	25	27	22	24	2.00
36341153--36341333	79	2.3	80	82	7	217	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36344507--36344538	15	2.0	17	88	11	50	31	3	18	46	1.65
36344741--36345047	47	6.7	44	69	13	192	28	19	29	21	1.98
36344749--36345054	91	3.3	91	75	11	341	28	19	29	22	1.98
36344649--36345101	187	2.4	187	89	2	689	29	18	28	23	1.98
36350229--36350276	22	2.1	24	85	14	66	54	0	6	39	1.26
36355697--36355861	46	3.5	45	74	16	113	28	16	30	23	1.97
36357068--36357108	22	1.9	22	90	5	66	12	43	26	17	1.84
36358655--36358686	13	2.5	13	100	0	64	40	34	12	12	1.81
36359627--36359716	42	2.1	43	85	2	119	34	27	11	26	1.90
36361544--36361782	27	8.9	27	86	1	327	28	23	8	39	1.84
36361787--36362076	27	10.8	27	84	2	230	38	20	12	28	1.88
36361983--36362172	27	7.0	27	89	0	254	34	20	21	24	1.96
36362377--36362496	25	4.8	25	92	0	195	25	24	23	27	2.00
36362377--36362521	50	2.9	50	86	6	161	26	23	23	26	2.00
36362377--36362521	75	1.9	75	87	5	213	26	23	23	26	2.00
36362717--36362794	29	2.6	29	80	11	79	29	20	24	25	1.99
36378172--36378390	40	5.6	39	81	5	237	25	24	25	24	2.00
36378172--36378381	79	2.7	79	83	3	246	25	23	25	25	2.00
36385489--36385661	93	1.9	93	92	0	292	26	30	22	20	1.98
36385482--36385657	46	3.8	46	78	10	196	27	30	22	19	1.98
36385533--36385676	46	3.1	46	73	7	139	28	29	21	20	1.98
36389004--36389222	40	5.6	39	80	5	228	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36389004--36389213	79	2.7	79	82	3	237	25	23	25	25	2.00
36423001--36423102	43	2.4	43	86	0	123	30	18	17	33	1.94
36425093--36425148	26	2.2	26	83	6	69	14	16	1	67	1.31
36425134--36425168	15	2.4	14	90	9	52	17	14	0	68	1.21
36426509--36426559	25	2.0	25	100	0	102	31	7	23	37	1.83
36428858--36428898	21	2.0	22	85	9	59	24	4	17	53	1.63
36429968--36430080	42	2.7	43	84	1	138	24	17	25	31	1.97
36429980--36430080	43	2.4	42	83	5	114	26	18	24	29	1.98
36430228--36430300	35	2.1	35	97	0	137	41	9	13	35	1.77
36436892--36436977	40	2.2	40	91	0	136	32	32	20	13	1.92
36437761--36438095	144	2.3	146	83	3	460	26	26	18	27	1.98
36437763--36438094	48	6.9	48	78	4	319	26	27	18	27	1.98
36440043--36440090	21	2.2	22	77	3	53	43	6	22	27	1.77
36439885--36440115	115	2.0	115	97	0	435	32	10	23	33	1.89
36443678--36443859	40	4.6	40	87	2	242	25	21	25	28	1.99
36445425--36445618	40	4.9	40	90	0	300	22	26	23	27	2.00
36445398--36445618	80	2.8	80	86	2	304	21	26	23	28	1.99
36453309--36453480	39	4.6	40	86	9	213	21	28	22	27	1.99
36453320--36453480	38	4.2	38	86	7	195	21	28	22	27	1.99
36453309--36453474	77	2.2	76	86	6	221	21	29	22	26	1.99
36455029--36455162	39	3.7	39	78	15	160	29	23	19	27	1.98
36458123--36458380	39	6.6	39	84	8	300	25	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36458123--36458380	76	3.3	77	85	10	298	25	22	26	24	2.00
36458175--36458412	76	3.1	77	83	8	236	26	21	26	24	2.00
36466141--36466363	39	5.7	40	85	8	266	25	22	27	24	2.00
36466141--36466363	79	2.8	81	84	9	282	25	22	27	24	2.00
36466141--36466396	79	3.3	79	81	10	217	26	21	27	24	1.99
36472906--36472984	25	3.3	25	61	10	65	32	5	29	32	1.79
36472890--36473458	47	12.1	47	94	1	942	32	8	29	28	1.87
36473577--36473655	37	2.1	37	86	4	106	25	18	29	26	1.98
36475495--36475640	43	3.4	43	98	0	283	23	14	35	26	1.93
36475622--36475695	29	2.6	29	89	4	105	25	16	32	25	1.96
36476010--36476205	40	4.9	40	81	5	184	26	22	27	24	2.00
36476010--36476206	80	2.5	81	82	5	222	25	22	26	24	2.00
36479598--36480053	46	10.1	47	89	6	651	31	8	30	29	1.87
36479598--36480053	91	5.0	94	86	8	651	31	8	30	29	1.87
36479598--36480001	135	3.0	138	91	5	668	31	7	29	30	1.86
36480172--36480250	37	2.1	37	88	4	115	25	18	30	25	1.98
36492847--36492889	21	2.1	20	82	4	50	46	20	4	27	1.71
36494463--36494524	13	4.5	13	74	20	54	69	0	1	29	0.98
36498011--36498077	30	2.3	29	80	10	73	55	2	5	35	1.40
36503219--36503410	40	4.8	40	90	1	190	27	27	21	23	1.99
36503190--36503409	80	2.8	80	79	4	239	28	26	21	23	1.99
36511336--36511444	40	2.8	40	90	2	159	22	29	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36521701--36521757	30	1.9	30	100	0	114	22	19	31	26	1.98
36522816--36522988	46	3.7	46	78	10	190	23	20	26	29	1.99
36522813--36522983	93	1.8	93	92	0	288	22	21	27	28	1.99
36529939--36530107	46	3.7	46	74	12	166	23	20	25	30	1.98
36529932--36530102	93	1.8	93	89	2	272	22	21	26	29	1.99
36534454--36534487	12	2.8	12	95	0	59	29	14	11	44	1.81
36535870--36536657	4	202.5	4	80	5	783	25	7	24	41	1.81
36538022--36538079	26	2.2	26	78	6	64	50	1	3	44	1.29
36538161--36538252	44	2.0	46	83	8	118	39	22	1	36	1.62
36543297--36543328	16	1.9	17	93	6	57	46	6	6	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373