genome.fa.s8.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  135  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44566073--44566139	33	2.0	33	100	0	134	38	23	8	28	1.85
44568130--44568154	11	2.3	11	100	0	50	16	8	36	40	1.77
44569161--44569321	42	3.8	42	84	5	173	23	19	26	29	1.98
44571592--44571652	6	9.8	6	89	3	68	73	4	4	16	1.18
44571593--44571652	19	3.2	19	80	15	63	73	5	5	16	1.19
44574191--44574345	79	2.0	80	86	8	219	26	28	21	23	1.99
44574163--44574347	40	4.6	41	84	9	231	26	27	22	23	1.99
44583827--44584004	27	6.6	27	82	3	196	27	15	27	29	1.96
44583824--44584004	82	2.2	81	82	2	220	27	15	27	29	1.96
44591938--44592115	27	6.6	27	83	3	205	26	15	28	29	1.96
44591939--44592094	82	1.9	81	88	3	233	26	15	28	29	1.96
44591935--44592115	82	2.2	81	83	2	229	27	15	27	29	1.96
44593601--44593818	79	2.7	78	82	7	244	26	27	20	25	1.99
44593634--44593818	40	4.7	40	80	9	209	27	28	21	23	1.99
44595674--44595715	3	14.0	3	100	0	84	66	0	0	33	0.92
44597438--44597715	43	6.5	42	89	2	403	31	32	24	10	1.90
44597438--44597715	86	3.2	86	92	0	466	31	32	24	10	1.90
44597438--44597715	129	2.2	129	91	0	448	31	32	24	10	1.90
44597708--44597810	38	2.7	38	74	5	91	32	24	17	26	1.97
44600466--44600521	25	2.2	25	90	6	87	28	28	5	37	1.79
44600474--44600523	25	2.0	25	100	0	100	28	28	4	40	1.74
44603179--44603502	43	7.6	43	90	0	497	30	33	24	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44603495--44603618	38	3.2	38	78	4	106	29	24	20	25	1.99
44610677--44610883	94	2.2	92	82	1	243	28	19	29	22	1.98
44610677--44610883	46	4.5	44	76	9	180	28	19	29	22	1.98
44611637--44611720	31	2.7	31	92	1	134	28	25	16	29	1.97
44611927--44611996	25	2.8	25	91	4	106	24	24	27	24	2.00
44615061--44615118	30	1.9	31	86	10	84	37	3	6	51	1.46
44617289--44617450	85	1.9	85	83	5	211	24	17	25	32	1.97
44617289--44617447	43	3.7	43	80	9	173	24	18	25	31	1.97
44617517--44617556	19	2.1	19	100	0	80	37	0	20	42	1.52
44625668--44625846	41	4.3	41	88	5	254	20	19	24	36	1.95
44625688--44625844	84	1.9	84	90	5	255	19	19	24	36	1.95
44625668--44625854	84	2.2	84	85	5	247	20	18	22	37	1.94
44629022--44629050	15	1.9	15	100	0	58	34	3	13	48	1.60
44633283--44633372	27	3.4	27	83	3	112	27	18	7	45	1.77
44633298--44633381	25	3.2	25	77	11	80	29	15	9	45	1.78
44633404--44633502	27	3.7	27	83	4	128	40	23	8	28	1.83
44633404--44633528	54	2.3	55	80	5	130	40	21	8	29	1.82
44633630--44633703	27	2.8	26	75	17	71	39	21	18	20	1.93
44637144--44637233	27	3.3	27	87	0	135	30	23	6	40	1.80
44637239--44637475	27	8.7	27	74	7	124	40	18	7	32	1.79
44637267--44637452	54	3.4	53	76	7	162	40	18	6	33	1.78
44638379--44638448	25	2.8	25	91	0	104	28	25	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44641631--44641661	16	1.9	16	100	0	62	45	19	22	12	1.84
44641874--44641933	30	2.1	29	81	12	70	31	15	25	28	1.95
44648021--44648094	32	2.3	32	90	0	112	27	27	22	22	2.00
44655655--44655709	19	3.0	19	72	22	55	30	3	1	63	1.22
44658956--44658992	2	19.0	2	94	5	67	51	0	48	0	1.00
44661312--44661467	40	3.9	40	85	6	226	23	28	23	25	2.00
44679547--44679780	49	4.7	50	80	6	217	27	18	24	28	1.98
44681634--44681681	24	2.0	24	100	0	96	45	8	16	29	1.76
44686778--44686816	14	2.8	14	92	7	62	23	25	7	43	1.80
44688575--44688748	49	3.5	49	80	6	206	26	19	24	29	1.99
44688575--44688761	100	1.9	100	89	0	293	27	19	24	28	1.99
44695824--44696007	49	3.7	49	81	2	233	27	25	20	27	1.99
44695829--44696016	100	1.9	100	94	0	331	27	25	20	26	1.99
44699208--44699245	20	1.9	20	84	10	51	42	13	23	21	1.88
44701145--44701464	46	7.0	46	92	0	498	38	15	24	22	1.92
44705609--44705658	20	2.5	20	96	0	91	20	28	34	18	1.95
44718188--44718252	34	1.9	34	81	6	78	26	21	24	27	1.99
44719679--44719944	94	2.8	92	79	8	254	26	18	30	24	1.98
44719676--44719932	140	1.8	140	84	3	347	26	18	29	24	1.98
44719676--44719942	47	5.7	47	77	9	208	26	18	29	24	1.98
44721017--44721060	21	2.2	21	92	8	74	9	29	31	29	1.88
44724106--44724164	28	2.1	28	100	0	118	32	0	25	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724106--44724172	28	2.4	28	92	5	100	35	0	23	40	1.55
44725556--44725685	43	3.0	43	83	10	167	23	19	26	30	1.98
44727564--44727614	18	2.8	18	81	16	61	5	31	0	62	1.19
44729554--44729585	16	2.0	16	93	0	55	28	0	15	56	1.40
44730012--44730344	24	13.9	24	73	11	245	25	11	26	36	1.90
44730012--44730344	48	6.9	48	75	5	298	25	11	26	36	1.90
44730013--44730344	96	3.5	96	91	1	522	25	11	26	35	1.90
44732331--44732568	47	5.1	47	93	0	377	27	28	10	33	1.90
44732378--44732499	22	5.3	22	63	27	65	25	29	13	31	1.93
44742023--44742351	24	13.9	24	72	13	243	25	12	27	35	1.91
44742024--44742322	96	3.2	95	94	1	505	25	12	27	35	1.91
44742225--44742265	20	2.0	20	90	0	64	19	14	29	36	1.92
44742024--44742350	48	6.9	48	77	4	315	25	12	27	34	1.92
44744002--44744113	28	4.0	28	84	1	154	16	24	20	38	1.93
44745801--44745921	27	4.4	27	85	1	152	28	28	15	27	1.96
44745801--44745935	27	5.0	26	78	11	112	29	27	14	28	1.95
44753841--44754018	27	6.6	27	84	3	205	29	28	15	26	1.96
44753862--44754017	82	1.9	81	88	3	233	29	28	15	26	1.96
44753841--44754030	82	2.3	83	78	12	221	30	27	14	27	1.95
44759533--44759589	26	2.2	25	79	14	62	36	24	12	26	1.91
44759697--44759759	28	2.2	28	97	0	117	17	23	20	38	1.93
44759697--44759784	28	3.2	28	88	3	99	19	22	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44764734--44764892	43	3.9	42	82	6	157	26	15	26	31	1.96
44772048--44772108	30	2.0	30	87	0	86	29	22	8	39	1.83
44774316--44774439	43	2.9	42	78	7	135	30	16	23	29	1.96
44789179--44789252	29	2.6	29	86	4	96	25	31	16	27	1.96
44793557--44793722	43	3.9	44	79	7	171	26	13	25	34	1.93
44795016--44795053	19	2.1	18	90	9	60	28	26	18	26	1.98
44798360--44798454	28	3.6	27	77	8	79	35	13	22	28	1.92
44798375--44798477	24	4.1	24	78	9	107	33	13	23	29	1.93
44798375--44798477	52	2.1	49	85	7	136	33	13	23	29	1.93
44802296--44802334	21	1.9	21	94	5	71	10	38	30	20	1.86
44806041--44806251	47	4.7	47	82	10	269	30	14	23	31	1.94
44806135--44806296	38	4.0	38	81	13	198	29	15	25	30	1.96
44806083--44806289	85	2.4	85	96	0	378	29	14	24	31	1.95
44819726--44819767	15	2.8	15	88	0	66	16	16	14	52	1.75
44822251--44822580	38	7.6	47	77	12	237	31	15	21	31	1.94
44822336--44822620	38	7.0	38	75	13	246	30	14	22	31	1.94
44822374--44822613	85	2.8	85	91	0	381	30	14	22	32	1.94
44822287--44822528	123	2.0	123	91	0	394	30	14	23	31	1.94
44831736--44831797	24	2.6	24	86	0	88	35	29	12	22	1.91
44833072--44833107	15	2.5	14	86	8	54	22	11	0	66	1.22
44839721--44839782	24	2.6	24	86	0	88	35	27	14	22	1.93
44841027--44841062	15	2.5	14	86	8	54	22	11	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44842933--44842957	13	1.9	13	100	0	50	16	4	16	64	1.44
44843710--44843932	46	4.7	47	79	12	192	29	19	29	21	1.98
44853016--44853066	19	2.7	20	75	6	61	62	0	0	37	0.95
44853069--44853098	8	3.8	8	95	0	51	50	0	0	50	1.00
44858512--44858558	24	2.0	24	95	0	85	27	19	27	25	1.99
44861862--44861926	28	2.4	28	94	2	114	24	29	21	24	1.99
44861791--44861914	59	2.1	60	84	3	160	28	26	18	26	1.98
44861971--44862014	19	2.2	20	84	4	54	34	25	18	22	1.96
44870095--44870133	3	12.7	3	83	5	51	33	7	0	58	1.26
44870389--44870433	23	2.0	23	86	0	63	26	6	2	64	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373