genome.fa.s8.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  131  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43294756--43294872	42	2.7	43	80	9	123	25	16	23	34	1.95
43297735--43297805	33	2.2	33	82	5	81	28	25	19	26	1.99
43297940--43298003	23	2.8	23	87	0	92	40	20	18	20	1.91
43304670--43304706	9	4.1	9	86	13	58	45	10	10	32	1.74
43304748--43304809	29	2.1	31	90	6	101	20	33	0	45	1.52
43305891--43306040	43	3.5	44	81	9	184	25	17	24	33	1.96
43305890--43306029	44	3.3	43	82	7	169	25	17	22	34	1.96
43309400--43309533	27	5.0	27	86	0	169	25	20	20	34	1.96
43309528--43309625	27	3.6	27	82	6	119	40	8	17	33	1.79
43309561--43309690	65	2.0	65	96	0	242	40	9	20	30	1.83
43309591--43309670	38	2.1	38	88	0	115	42	8	21	27	1.82
43309629--43309695	27	2.5	27	95	0	125	41	7	22	28	1.80
43312336--43312490	43	3.7	42	77	10	129	30	28	16	24	1.96
43312336--43312455	41	2.8	43	80	8	131	30	26	17	25	1.97
43317040--43317137	24	4.0	24	81	1	115	35	4	37	22	1.73
43319895--43320237	40	8.6	40	90	2	476	27	27	20	24	1.99
43327328--43327670	40	8.6	40	90	2	476	27	27	20	24	1.99
43329196--43329306	27	4.2	26	86	5	141	17	25	21	36	1.95
43329196--43329306	54	2.1	53	87	1	159	17	25	21	36	1.95
43329369--43329407	19	2.0	18	85	14	51	20	0	51	28	1.48
43330264--43330303	16	2.6	16	84	7	57	62	10	2	25	1.39
43334105--43334168	32	2.0	32	93	0	110	18	17	29	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43335588--43335685	24	4.0	24	86	1	133	34	3	39	22	1.70
43335588--43335685	48	2.0	49	90	2	153	34	3	39	22	1.70
43337077--43337187	27	4.2	26	83	5	132	18	25	20	36	1.95
43343399--43343488	24	3.8	24	87	0	126	34	3	40	22	1.70
43344892--43345002	54	2.1	53	87	1	159	16	24	22	36	1.94
43344892--43345002	27	4.2	26	86	5	141	16	24	22	36	1.94
43347328--43347505	27	6.6	27	84	3	205	29	28	15	26	1.96
43347349--43347504	82	1.9	81	88	3	233	29	28	15	26	1.96
43347981--43348006	12	2.2	12	100	0	52	42	0	7	50	1.31
43355228--43355405	27	6.6	27	84	3	205	29	28	15	26	1.96
43355249--43355404	82	1.9	81	88	3	233	29	28	15	26	1.96
43355880--43355905	12	2.2	12	100	0	52	42	0	7	50	1.31
43358851--43358962	40	2.8	41	80	8	124	28	18	24	28	1.98
43359000--43359032	13	2.4	14	90	5	50	15	0	39	45	1.46
43359275--43359308	6	6.0	6	93	6	54	17	0	0	82	0.67
43359465--43359508	16	2.8	17	86	10	58	43	34	2	20	1.64
43359614--43359658	22	2.1	21	88	8	65	53	24	0	22	1.46
43359619--43359671	22	2.5	21	82	8	63	58	16	0	24	1.38
43360159--43360231	7	10.1	7	75	19	62	19	1	36	42	1.60
43363761--43363794	3	11.0	3	87	6	50	0	0	29	70	0.87
43364211--43364329	36	3.1	36	78	15	139	45	16	3	34	1.64
43364205--43364329	43	3.1	42	78	15	154	46	16	3	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43364274--43364337	9	7.1	9	75	7	58	45	21	1	31	1.62
43369432--43369460	14	2.1	14	93	6	51	37	0	6	55	1.27
43369867--43369918	21	2.5	21	84	6	70	30	15	50	3	1.62
43370318--43370409	43	2.1	43	87	0	130	30	26	15	28	1.96
43376226--43376568	40	8.6	40	90	2	476	24	20	27	27	1.99
43383659--43384001	40	8.6	40	90	2	476	24	20	27	27	1.99
43386241--43386277	19	1.9	19	94	0	65	37	21	10	29	1.88
43396419--43396468	24	2.0	25	81	11	59	10	34	2	54	1.45
43399374--43399408	18	2.0	18	94	5	63	28	14	17	40	1.88
43400290--43400342	27	2.0	27	85	3	72	24	18	18	37	1.94
43400653--43400707	28	2.0	28	85	7	76	29	36	14	20	1.92
43403554--43403745	27	7.1	27	82	1	215	33	18	20	26	1.96
43403554--43403719	54	3.1	54	88	0	242	34	17	21	27	1.95
43410576--43410825	40	6.3	40	91	1	342	25	20	27	26	1.99
43410523--43410825	80	3.8	80	85	3	362	25	20	27	26	1.99
43410530--43410825	120	2.5	119	83	3	344	26	19	27	26	1.99
43422754--43422809	26	2.2	26	96	0	103	39	17	14	28	1.89
43422929--43423052	41	3.0	41	85	0	176	30	32	17	19	1.95
43423317--43423472	27	5.7	27	81	7	154	29	10	19	41	1.84
43423312--43423472	81	2.0	82	82	7	202	30	11	18	39	1.86
43423312--43423498	81	2.3	81	80	7	191	30	12	18	38	1.88
43427793--43427861	34	2.0	35	91	2	113	15	21	14	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43429340--43429380	22	1.9	21	85	5	55	29	24	34	12	1.91
43429515--43429619	41	2.6	41	90	3	160	18	40	20	20	1.92
43430629--43430751	46	2.6	46	79	8	133	25	28	18	27	1.98
43433388--43433416	14	2.1	14	93	6	51	37	0	6	55	1.27
43433823--43433874	21	2.5	21	84	6	70	30	15	50	3	1.62
43434274--43434365	43	2.1	43	85	0	121	31	26	14	28	1.94
43439534--43439570	19	1.9	19	94	0	65	37	21	10	29	1.88
43449596--43449630	13	2.8	13	91	4	54	74	0	11	14	1.08
43455979--43456028	24	2.0	25	81	11	59	10	34	2	54	1.45
43457511--43457590	31	2.5	31	90	6	117	23	25	17	33	1.96
43457784--43457904	25	5.0	24	84	7	156	28	22	20	28	1.99
43457805--43457902	23	4.1	23	89	4	142	28	21	20	29	1.98
43457953--43458019	20	3.3	20	93	0	116	32	20	11	34	1.90
43457953--43458008	11	5.5	11	71	16	57	32	19	12	35	1.89
43458056--43458103	25	1.9	25	86	0	69	25	16	25	33	1.96
43464046--43464079	18	1.9	18	94	5	61	29	8	17	44	1.79
43464962--43465014	27	2.0	27	85	3	72	24	18	18	37	1.94
43465325--43465379	28	2.0	28	85	7	76	29	36	14	20	1.92
43468972--43469242	40	6.7	41	88	5	345	24	21	29	24	1.99
43468972--43469242	82	3.3	82	86	4	370	24	21	29	24	1.99
43477344--43477651	40	7.8	40	90	4	493	24	21	30	23	1.99
43483498--43483604	40	2.7	40	97	0	196	23	20	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43483498--43483668	40	4.3	40	85	3	193	22	20	26	29	1.98
43488443--43488686	40	6.1	40	89	1	337	27	29	21	21	1.98
43499180--43499304	40	3.1	40	85	0	169	27	24	22	25	2.00
43506073--43506249	40	4.4	40	83	4	225	25	27	22	24	1.99
43514352--43514519	40	4.2	40	83	3	223	26	27	22	23	1.99
43527718--43527811	40	2.3	41	81	5	111	26	25	17	30	1.97
43531227--43531301	28	2.6	28	83	6	89	30	26	14	28	1.95
43538990--43539064	28	2.6	28	83	6	89	30	26	14	28	1.95
43547083--43547307	49	4.5	49	85	2	279	29	28	18	24	1.98
43547081--43547314	99	2.3	100	83	3	294	29	28	18	23	1.98
43549648--43549831	48	3.8	48	78	5	190	28	29	14	27	1.95
43549796--43549962	46	3.6	45	81	8	140	23	30	17	28	1.97
43550302--43550386	30	2.8	30	90	0	125	35	25	7	31	1.83
43555757--43555811	27	2.0	27	100	0	110	29	29	10	30	1.91
43558262--43558288	13	2.1	13	100	0	54	14	29	33	22	1.94
43559025--43559095	36	2.0	36	100	0	142	38	8	11	42	1.71
43561296--43561344	21	2.3	21	92	0	80	20	26	38	14	1.91
43562498--43562812	48	6.7	47	74	12	177	24	28	18	28	1.98
43565804--43566050	40	6.2	40	88	1	300	28	27	19	23	1.99
43579968--43580072	46	2.2	48	86	6	142	35	14	24	25	1.93
43584311--43584415	46	2.2	48	86	6	142	35	14	24	25	1.93
43586203--43586250	25	1.9	25	82	0	60	33	20	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43586297--43586334	11	3.6	11	79	13	53	36	13	18	31	1.89
43586381--43586469	25	3.6	25	92	4	137	26	25	23	23	2.00
43586694--43586777	31	2.7	31	88	1	125	34	17	23	23	1.96
43592463--43592634	46	3.7	46	77	13	190	27	28	22	21	1.99
43592468--43592638	93	1.8	93	92	0	288	27	29	22	21	1.99
43595948--43596148	47	4.3	47	90	2	296	28	30	8	31	1.88
43596048--43596264	116	1.9	116	96	0	398	31	26	7	34	1.84
43596088--43596217	69	1.9	67	93	3	224	32	26	6	35	1.81
43596135--43596176	20	2.1	20	100	0	84	38	19	0	42	1.51
43596001--43596319	163	2.0	163	98	0	611	30	27	7	33	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373