genome.fa.s8.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  95  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30667864--30668027	47	3.5	47	73	17	160	31	28	18	21	1.97
30667910--30668081	46	3.7	45	70	13	143	32	27	18	22	1.97
30667818--30668083	93	2.9	93	85	1	354	30	28	18	22	1.97
30675636--30675813	27	6.6	27	82	3	196	26	15	28	29	1.96
30675637--30675792	82	1.9	81	86	3	224	26	16	28	28	1.97
30675633--30675813	82	2.2	81	82	2	220	27	16	27	29	1.97
30677408--30677445	16	2.4	16	95	0	67	28	18	18	34	1.95
30678801--30678871	29	2.5	29	86	4	92	50	16	11	21	1.76
30682952--30683096	37	3.9	37	79	1	166	37	34	10	17	1.84
30683953--30684022	36	1.9	36	94	0	122	50	4	24	21	1.67
30689510--30689593	29	2.9	29	89	0	123	19	22	34	23	1.96
30689502--30689609	29	3.7	29	81	2	90	22	25	33	19	1.97
30703150--30703354	27	7.6	27	86	3	250	26	13	27	31	1.94
30703150--30703354	109	1.9	109	84	2	277	26	13	27	31	1.94
30707055--30707232	27	6.5	28	78	7	177	26	30	16	26	1.97
30707055--30707232	55	3.3	55	85	3	243	26	30	16	26	1.97
30715067--30715240	27	6.4	27	82	4	163	28	29	15	26	1.96
30715088--30715240	82	1.9	80	85	5	209	28	29	15	26	1.96
30715067--30715240	54	3.2	53	80	8	190	28	29	15	26	1.96
30719822--30720010	54	3.5	54	92	0	315	32	25	19	22	1.97
30729148--30729226	28	2.9	28	82	14	101	34	25	13	26	1.94
30736568--30736645	19	4.2	17	76	15	59	15	14	1	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30736568--30736648	18	4.3	18	80	9	83	16	14	1	67	1.29
30736654--30736686	17	1.9	17	93	0	57	0	21	0	78	0.75
30738440--30738489	20	2.3	23	86	13	70	46	14	8	32	1.73
30741263--30741341	37	2.1	37	92	0	131	29	21	7	41	1.80
30749163--30749200	19	2.0	19	90	10	60	71	0	7	21	1.11
30760857--30760894	20	1.9	20	84	10	51	55	10	5	28	1.56
30761105--30761138	17	1.9	17	88	5	50	14	44	29	11	1.81
30777697--30777732	19	1.9	19	88	5	56	44	11	0	44	1.39
30779458--30779523	29	2.4	27	78	9	69	37	3	19	39	1.67
30782954--30783004	20	2.4	22	83	6	70	49	0	0	50	1.00
30783065--30783094	15	1.9	15	93	6	51	46	6	6	40	1.56
30787744--30787777	8	4.2	8	92	0	50	41	0	2	55	1.15
30790086--30790162	24	3.2	24	96	0	136	33	3	41	20	1.71
30791576--30791686	27	4.1	27	87	4	145	16	23	21	38	1.92
30799346--30799696	47	7.4	47	91	2	479	33	8	29	27	1.87
30802256--30802455	40	5.1	40	90	1	287	24	21	28	26	1.99
30802256--30802455	79	2.5	80	87	1	287	24	21	28	26	1.99
30805809--30806160	47	7.4	47	92	1	490	34	8	29	27	1.87
30814794--30814885	31	3.0	31	88	0	148	16	28	34	20	1.94
30819932--30819973	17	2.5	17	96	0	75	42	9	19	28	1.82
30824383--30824451	30	2.3	30	80	7	79	57	15	15	10	1.64
30824383--30824447	15	4.4	15	73	9	62	60	12	16	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30827142--30827167	13	2.0	13	100	0	52	30	0	7	61	1.24
30828593--30828643	25	2.0	25	100	0	102	15	15	27	41	1.88
30828553--30828680	65	2.0	65	92	3	213	19	19	28	32	1.96
30832285--30832395	27	4.1	27	88	5	154	37	22	23	16	1.93
30839585--30839695	27	4.1	27	86	5	145	38	22	22	16	1.92
30850072--30850227	43	3.6	44	80	8	169	28	16	25	30	1.96
30852325--30852571	39	6.4	39	90	0	379	29	28	23	19	1.98
30854561--30854601	19	2.2	19	90	0	64	39	9	0	51	1.35
30857699--30857731	9	3.5	10	88	12	52	24	12	42	21	1.86
30857807--30857872	26	2.4	28	72	10	73	24	15	33	27	1.95
30859129--30859162	18	1.9	18	88	5	52	41	11	17	29	1.85
30870692--30870729	17	2.3	16	90	4	58	5	31	5	57	1.43
30871157--30871212	20	2.8	20	94	0	94	71	17	8	1	1.21
30883670--30883709	21	2.0	21	90	5	64	20	27	40	12	1.88
30884904--30885029	49	2.6	49	83	6	148	24	25	19	30	1.98
30885044--30885263	46	4.7	47	79	6	223	23	29	20	27	1.98
30885041--30885263	94	2.4	94	81	3	270	22	29	20	27	1.98
30891505--30891544	21	2.0	21	90	5	64	25	27	35	12	1.92
30900554--30900790	101	2.4	99	81	4	262	31	26	16	25	1.97
30900559--30900790	50	4.6	50	76	8	222	31	26	16	25	1.97
30902635--30902671	18	2.1	18	89	0	56	40	13	0	45	1.43
30906807--30907048	50	4.8	50	79	6	240	31	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30909869--30909905	18	2.1	18	89	0	56	40	13	0	45	1.43
30914315--30914552	50	4.8	50	76	8	229	29	25	18	25	1.98
30923542--30923580	18	2.2	17	86	4	51	41	2	0	56	1.13
30923888--30923921	16	2.1	16	88	0	50	29	32	2	35	1.73
30938441--30938509	22	3.2	22	80	10	79	17	33	30	18	1.94
30938472--30938517	22	2.1	22	91	0	74	17	30	32	19	1.95
30940628--30940676	20	2.7	18	77	22	57	51	4	2	42	1.32
30943779--30943886	17	6.3	18	70	19	54	40	1	2	54	1.25
30943788--30943886	12	8.6	12	69	19	61	41	2	3	53	1.28
30943792--30943929	68	2.0	72	90	5	221	41	3	5	50	1.42
30952361--30952393	11	2.9	12	86	13	52	33	0	0	66	0.92
30953348--30953482	60	2.2	61	86	6	202	43	0	1	54	1.14
30953364--30953465	11	8.6	12	66	22	56	39	0	1	58	1.09
30953639--30953679	16	2.6	16	81	14	57	26	24	2	46	1.65
30953895--30953942	23	2.0	23	84	8	60	35	0	2	62	1.07
30955083--30955251	45	3.8	43	78	10	153	44	15	20	19	1.87
30961604--30961665	32	1.9	32	93	0	106	17	29	8	45	1.77
30965508--30965669	86	1.9	85	83	8	213	22	16	26	33	1.95
30965513--30965669	43	3.7	42	77	13	160	23	16	26	33	1.96
30976933--30976965	15	2.2	15	94	0	57	42	6	0	51	1.26
30977271--30977361	42	2.2	41	86	2	119	20	28	27	23	1.99
30978622--30978668	20	2.3	20	85	0	58	23	21	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30987598--30987704	33	3.2	33	94	1	178	28	22	20	28	1.99
31002260--31002296	19	1.9	19	88	0	56	37	27	10	24	1.88
31002261--31002305	19	2.4	19	84	0	54	40	28	6	24	1.80
31006367--31006815	47	9.5	47	95	0	781	32	8	29	29	1.87
31012389--31012416	13	2.2	13	100	0	56	42	21	7	28	1.79
31013105--31013199	47	2.0	47	100	0	190	55	10	14	18	1.67
31014928--31015014	44	2.0	44	86	0	120	45	1	9	43	1.43
31015570--31015665	43	2.2	44	82	10	110	25	7	27	40	1.81
31017099--31017131	13	2.6	13	90	4	50	75	0	15	9	1.03
31019852--31019901	18	2.8	17	87	6	55	52	26	2	20	1.57
31019867--31019903	18	2.1	18	100	0	74	48	27	0	24	1.51
31026991--31027045	27	2.0	27	100	0	110	27	14	3	54	1.57
31027417--31027466	18	2.8	17	87	6	55	52	26	2	20	1.57
31027432--31027468	18	2.1	18	100	0	74	48	27	0	24	1.51
31028511--31028609	39	2.5	39	86	3	128	34	15	12	38	1.84
31033055--31033106	18	2.7	19	88	5	70	53	3	9	32	1.51
31033127--31033164	5	7.6	5	100	0	76	39	0	0	60	0.97
31033197--31033231	17	2.0	17	88	5	52	68	0	20	11	1.20
31035884--31035910	10	2.7	10	100	0	54	22	0	14	62	1.31
31040227--31040374	41	3.5	41	76	11	133	29	26	18	25	1.98
31040219--31040388	43	4.0	42	79	9	168	31	26	17	24	1.97
31040965--31040994	15	2.0	15	93	0	51	56	23	0	20	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31042084--31042193	26	4.2	26	96	0	184	33	5	23	37	1.78
31043678--31043730	26	2.0	26	85	7	72	35	22	16	24	1.95
31047305--31047360	28	2.0	28	100	0	112	46	7	7	39	1.59
31047316--31047360	14	3.2	14	75	12	56	48	4	8	37	1.55
31050815--31050869	19	2.9	19	91	0	92	45	32	1	20	1.61
31050899--31051534	320	2.0	320	94	0	1119	34	18	18	27	1.95
31052741--31052775	5	7.0	5	93	0	61	22	57	0	20	1.41
31053501--31053582	31	2.6	31	92	0	128	36	15	6	41	1.72
31053519--31053572	16	3.5	15	75	14	56	37	16	9	37	1.81
31056098--31056124	6	4.5	6	100	0	54	48	0	33	18	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373