Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  269  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91278922--91279048
42
3.0
42
72
17
109
25
17
25
31
1.97
91300250--91300282
15
2.2
15
89
10
50
57
6
0
36
1.23
91304087--91304119
16
1.9
18
88
11
52
51
18
12
18
1.76
91304697--91304799
43
2.4
43
91
3
163
26
26
22
25
2.00
91314420--91314486
29
2.2
31
81
5
75
31
7
14
46
1.73
91314466--91314503
19
2.1
19
90
9
62
39
5
15
39
1.70
91314497--91314565
29
2.3
29
95
5
120
36
21
8
33
1.84
91322408--91322453
22
2.0
23
83
4
58
39
8
2
50
1.46
91322419--91322461
22
2.0
22
81
9
52
37
13
0
48
1.43
91324771--91324814
19
2.3
20
84
7
56
27
20
11
40
1.86
91329151--91329284
43
3.1
43
64
18
116
26
21
26
26
2.00
91329137--91329416
85
3.2
85
88
3
407
30
22
22
23
1.99
91329436--91329596
88
1.8
88
84
0
223
22
20
29
27
1.99
91329584--91329677
40
2.3
43
78
14
115
32
24
23
19
1.97
91331132--91331177
22
2.0
23
83
4
58
39
8
2
50
1.46
91331143--91331185
22
2.0
22
81
9
52
37
13
0
48
1.43
91332690--91332759
32
2.1
34
82
15
85
55
0
2
41
1.14
91337007--91337054
23
2.3
20
77
19
53
43
10
6
39
1.64
91337078--91337147
5
13.4
5
96
3
113
38
0
0
61
0.96
91341188--91341231
17
2.6
17
78
10
54
45
0
9
45
1.35
91343575--91343617
18
2.4
16
79
20
50
67
2
2
27
1.15
91343625--91343677
18
2.7
19
80
13
63
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91343643--91343678
18
1.9
19
94
5
65
61
0
0
38
0.96
91343625--91343681
20
2.9
20
75
19
57
61
0
0
38
0.96
91343648--91343690
18
2.3
18
84
8
50
67
2
0
30
1.03
91344127--91344181
26
2.2
24
83
6
65
70
3
1
23
1.12
91344126--91344181
25
2.3
24
84
9
69
69
3
1
25
1.14
91346646--91346723
40
2.0
40
94
0
138
44
12
16
25
1.83
91347348--91347451
40
2.6
40
90
0
163
42
10
22
25
1.85
91346628--91348030
717
2.0
716
87
1
2067
37
14
23
23
1.92
91349523--91349573
20
2.5
20
83
0
57
74
0
0
25
0.82
91349529--91349575
13
3.5
13
80
5
58
74
0
0
25
0.82
91350233--91350304
31
2.3
31
79
9
76
40
12
9
37
1.76
91359416--91359475
10
6.0
10
73
5
50
46
0
1
51
1.10
91359404--91359470
31
2.2
31
91
0
107
46
0
1
52
1.09
91359411--91359472
31
2.0
31
96
0
115
41
0
1
56
1.09
91363928--91363983
28
2.0
28
92
0
94
60
10
8
19
1.55
91367661--91367793
46
2.9
47
86
3
189
31
26
22
19
1.98
91370307--91370332
10
2.6
10
100
0
52
26
11
0
61
1.30
91371243--91371306
28
2.3
27
77
17
69
28
21
21
28
1.99
91376624--91376661
16
2.4
16
90
0
58
21
5
21
52
1.66
91380473--91380578
43
2.5
44
81
3
126
30
14
22
33
1.93
91382726--91382815
34
2.7
34
84
1
119
18
6
31
43
1.76
91384585--91384618
4
8.0
4
90
9
50
23
0
2
73
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91384568--91384627
22
2.7
22
73
19
61
26
0
6
66
1.16
91388295--91388332
4
9.0
4
91
8
58
23
0
2
73
0.95
91388289--91388332
12
3.3
13
87
12
63
22
0
2
75
0.92
91388289--91388341
26
2.0
26
82
13
65
24
0
1
73
0.93
91392437--91392465
13
2.2
13
100
0
58
72
6
6
13
1.26
91397618--91397647
11
2.7
11
100
0
60
56
0
36
6
1.26
91399844--91399897
20
2.7
19
75
11
54
59
1
1
37
1.19
91399865--91399919
28
2.0
28
82
7
67
54
1
1
41
1.21
91400102--91400148
25
2.0
23
84
12
60
21
14
10
53
1.71
91400169--91400238
34
2.1
34
100
0
140
24
11
5
58
1.54
91400172--91400246
34
2.2
34
95
0
132
24
10
6
58
1.55
91400950--91400979
9
3.2
9
95
4
51
86
0
3
10
0.67
91401050--91401128
28
2.9
27
84
5
95
51
5
17
25
1.65
91401050--91401147
28
3.6
28
80
6
94
50
6
20
23
1.71
91406451--91406499
24
2.0
24
96
0
89
28
2
20
48
1.60
91407680--91407743
21
3.0
21
76
0
74
10
23
21
43
1.84
91410785--91410890
47
2.3
47
93
0
176
42
6
23
27
1.79
91415375--91415491
42
2.8
42
82
2
137
14
23
19
42
1.88
91419788--91419880
41
2.3
41
92
0
150
24
27
13
33
1.94
91419788--91419849
21
3.0
21
65
11
56
22
30
16
30
1.96
91419788--91419903
41
2.8
41
88
0
124
21
24
17
37
1.94
91427748--91427859
55
2.0
55
94
0
197
32
3
21
42
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91432471--91432500
13
2.3
13
94
0
51
50
16
0
33
1.46
91432467--91432547
28
2.8
28
77
7
83
49
11
2
37
1.52
91440875--91440917
22
2.0
22
90
0
68
51
37
2
9
1.47
91441159--91441196
17
2.3
17
86
4
51
36
0
2
60
1.11
91441143--91441196
8
7.0
8
74
16
51
38
1
1
57
1.20
91448747--91448798
20
2.6
20
90
0
86
26
28
19
25
1.98
91464235--91464303
14
5.5
14
74
22
64
50
7
5
36
1.54
91464281--91464319
19
2.1
19
95
0
69
53
10
2
33
1.48
91466976--91467027
24
2.2
24
89
0
77
55
9
1
32
1.43
91468944--91468995
24
2.2
24
89
0
77
55
9
1
32
1.43
91469168--91469247
42
2.0
40
85
5
106
51
1
3
43
1.27
91469746--91469778
17
1.9
17
88
11
50
60
3
0
36
1.12
91475494--91475557
31
2.2
30
83
8
78
35
1
3
59
1.23
91475534--91475558
8
3.1
8
100
0
50
40
0
0
60
0.97
91475569--91475617
13
3.5
13
91
8
71
73
0
12
14
1.10
91477894--91477931
19
2.0
20
84
5
51
34
0
18
47
1.49
91484662--91484696
19
1.9
17
88
11
52
51
40
0
8
1.33
91488951--91488985
17
2.1
17
88
0
52
37
0
2
60
1.12
91496571--91496669
33
3.0
30
79
13
81
54
4
1
40
1.26
91508488--91508540
23
2.4
22
90
9
81
56
9
1
32
1.42
91508500--91508565
21
3.0
21
82
8
62
56
9
3
31
1.46
91508953--91509169
101
2.1
107
93
5
374
33
18
13
34
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91509781--91510126
169
2.0
175
95
4
634
29
17
20
33
1.95
91515791--91515827
6
6.2
6
100
0
74
64
0
0
35
0.94
91516172--91516205
16
2.1
16
94
0
59
67
0
5
26
1.13
91516524--91516557
18
1.9
18
94
5
52
70
0
0
29
0.87
91519637--91519704
34
2.0
35
88
8
104
13
20
22
44
1.86
91527914--91527940
13
2.1
13
100
0
54
29
37
33
0
1.58
91528719--91528982
46
5.6
49
72
11
167
23
31
18
25
1.98
91528721--91528842
49
2.6
47
86
5
156
26
31
18
23
1.97
91533066--91533090
8
3.1
8
100
0
50
88
0
0
12
0.53
91541550--91541732
40
4.6
40
84
2
226
30
15
22
31
1.95
91546102--91546127
13
2.0
13
100
0
52
61
0
7
30
1.24
91549142--91549260
59
2.0
59
91
0
193
35
19
10
34
1.87
91550618--91550890
40
6.8
40
80
5
241
34
15
20
30
1.93
91550618--91550867
81
3.1
79
83
5
290
34
14
20
30
1.93
91550618--91550876
80
3.3
79
81
6
274
34
14
20
30
1.93
91552430--91552466
5
7.4
5
100
0
74
18
0
0
81
0.70
91557045--91557079
6
5.8
6
86
0
52
25
0
0
74
0.82
91557037--91557083
12
3.9
12
97
0
85
23
0
2
74
0.93
91557036--91557108
12
6.2
11
78
10
65
20
0
5
73
1.02
91560637--91560795
27
5.9
27
80
11
166
35
22
23
18
1.95
91560673--91560795
54
2.3
54
95
0
219
34
24
24
16
1.95
91560901--91560974
28
2.8
26
85
4
85
31
8
22
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91562421--91562528
26
4.2
26
90
0
171
37
25
6
31
1.81
91566873--91567034
46
3.5
46
89
1
236
40
14
23
22
1.90
91566874--91567054
92
2.0
92
84
2
238
40
14
23
21
1.90
91575057--91575116
28
2.1
28
90
0
93
28
3
13
55
1.54
91575256--91575302
22
2.1
22
88
0
67
12
2
25
59
1.45
91585773--91586090
163
2.0
163
88
1
476
30
13
10
45
1.77
91586138--91586430
74
4.0
73
83
4
344
27
13
12
45
1.81
91586136--91586423
147
2.0
144
84
7
377
28
13
12
45
1.80
91586523--91586744
84
2.7
84
85
4
308
33
9
10
46
1.70
91590390--91590430
20
2.2
19
87
12
59
26
2
4
65
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373