Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  315  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106445417--106445502
30
2.9
30
94
0
145
26
51
5
16
1.67
106445987--106446038
24
2.2
23
83
10
61
36
3
0
59
1.16
106446054--106446208
25
6.0
25
71
14
82
32
7
4
56
1.47
106446186--106446243
22
2.8
20
72
20
57
32
6
3
56
1.42
106446200--106446245
23
2.0
23
84
16
60
30
6
2
60
1.34
106446358--106446405
16
3.1
15
87
6
60
31
4
2
62
1.26
106446358--106446409
8
6.5
8
78
8
52
30
3
1
63
1.23
106447009--106447048
21
1.9
21
85
10
55
37
5
12
45
1.64
106459431--106459533
42
2.5
42
91
0
161
15
27
15
41
1.87
106459434--106459560
42
3.0
42
84
2
139
16
25
16
40
1.89
106470023--106470095
2
36.5
2
100
0
146
0
49
0
50
1.00
106473824--106473885
32
1.9
32
87
6
90
24
4
17
53
1.63
106473992--106474077
30
2.9
29
78
13
104
60
0
3
36
1.14
106473992--106474077
14
5.9
14
68
17
50
60
0
3
36
1.14
106474054--106474080
7
3.9
7
100
0
54
55
0
0
44
0.99
106474067--106474130
28
2.3
28
94
2
112
62
0
4
32
1.16
106484329--106484368
20
2.0
20
85
9
55
37
2
0
60
1.11
106484350--106484385
18
2.1
18
90
10
58
36
0
0
63
0.94
106484839--106484872
17
2.0
17
100
0
68
52
5
0
41
1.25
106485394--106485420
5
5.4
5
100
0
54
18
0
0
81
0.69
106488654--106488910
47
5.4
47
90
3
356
32
8
31
28
1.87
106488808--106488882
22
3.3
22
65
17
62
32
10
30
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106498227--106498369
41
3.5
41
99
0
277
27
21
23
26
1.99
106498584--106498647
33
2.0
32
90
3
101
26
9
25
39
1.86
106498591--106498664
33
2.3
33
80
2
87
28
8
25
37
1.84
106505830--106505985
41
3.8
41
98
0
294
30
21
21
26
1.98
106506200--106506263
33
2.0
32
90
3
101
26
9
25
39
1.86
106506207--106506280
33
2.3
33
80
2
87
28
8
25
37
1.84
106509851--106509928
37
2.1
37
92
0
129
32
11
8
47
1.71
106511441--106511627
98
1.9
98
94
0
329
33
19
13
33
1.90
106513442--106513473
15
2.0
17
88
11
50
43
31
0
25
1.55
106519879--106519910
15
2.0
17
88
11
50
43
31
0
25
1.55
106522071--106522160
43
2.1
43
82
0
108
30
27
24
17
1.97
106522096--106522180
43
2.0
42
81
6
100
28
30
21
20
1.98
106524604--106524669
23
3.0
23
80
6
91
15
19
24
40
1.90
106526257--106526354
33
3.0
33
83
5
126
40
30
8
20
1.81
106526269--106526375
33
3.2
33
89
0
151
42
29
8
18
1.80
106533978--106534362
212
1.8
213
94
1
693
34
16
6
42
1.73
106538377--106538429
28
1.9
27
88
11
81
24
3
1
69
1.15
106538413--106538461
24
2.0
26
88
8
75
44
0
2
53
1.12
106538435--106538471
19
2.0
19
89
5
58
37
0
5
56
1.22
106538440--106538483
19
2.2
21
84
11
58
38
0
4
56
1.20
106538474--106538505
11
2.8
12
86
13
50
31
0
0
68
0.90
106546540--106546570
14
2.2
14
100
0
62
45
0
16
38
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106547127--106547163
16
2.3
16
86
13
58
40
0
0
59
0.97
106550162--106550242
24
3.5
23
74
5
74
22
0
6
71
1.08
106552620--106552649
15
2.0
15
100
0
60
46
6
20
26
1.75
106564140--106564170
16
1.9
16
100
0
62
19
12
12
54
1.70
106567272--106567323
18
2.9
18
72
13
54
67
0
3
28
1.08
106567301--106567349
18
2.7
19
76
17
50
63
0
2
34
1.06
106567342--106567392
18
2.6
21
81
15
72
54
0
3
41
1.19
106572842--106573880
44
23.6
44
67
10
327
23
22
22
31
1.98
106572885--106574014
132
8.6
132
89
1
1629
23
23
21
31
1.98
106610381--106611634
628
2.0
628
93
0
2163
34
19
19
25
1.96
106616701--106616793
48
1.9
48
80
4
107
38
16
17
27
1.91
106622779--106622827
5
10.0
5
97
2
91
40
0
0
59
0.98
106623629--106623664
16
2.2
17
90
5
56
38
0
19
41
1.52
106623768--106623824
25
2.3
25
93
0
87
19
24
17
38
1.93
106623769--106623870
22
4.3
24
80
13
115
19
24
16
39
1.92
106623781--106623868
47
1.9
44
84
11
115
20
25
15
38
1.92
106626735--106626892
27
5.9
27
82
11
173
35
22
23
18
1.96
106626735--106626892
54
2.9
54
90
2
230
35
22
23
18
1.96
106627282--106627311
8
3.8
8
90
0
51
3
26
26
43
1.70
106628489--106628596
26
4.2
26
91
0
180
36
23
7
33
1.83
106634062--106634245
40
4.6
40
79
6
187
26
27
20
25
1.99
106642162--106642384
119
1.9
120
82
6
283
25
27
21
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106642141--106642384
40
6.1
40
84
6
264
25
27
21
25
1.99
106645453--106645609
38
4.0
38
85
5
172
31
25
21
21
1.98
106645453--106645609
78
2.0
78
82
7
194
31
25
21
21
1.98
106648225--106648277
26
2.0
26
82
13
65
58
9
0
32
1.30
106649083--106649142
28
2.1
28
93
0
102
58
5
3
33
1.36
106650823--106650919
47
2.1
47
94
3
169
24
16
15
43
1.87
106653943--106653986
23
2.0
22
81
4
52
31
0
4
63
1.14
106653983--106654023
19
2.2
19
86
0
55
60
2
9
26
1.40
106654336--106654368
17
1.9
17
93
0
57
27
21
27
24
1.99
106665304--106665450
46
3.2
43
79
9
141
25
29
19
25
1.98
106668313--106668688
94
4.0
94
97
0
689
30
10
19
39
1.85
106671643--106671676
17
2.0
18
88
11
54
50
0
8
41
1.34
106671667--106671700
9
3.9
9
84
7
52
44
0
2
52
1.16
106707096--106707137
15
2.6
17
78
17
54
66
4
0
28
1.12
106707078--106707137
31
1.9
30
83
6
75
65
5
0
30
1.14
106729264--106729294
8
3.9
8
91
0
53
38
22
25
12
1.90
106729526--106729602
29
2.7
29
81
0
91
24
15
33
25
1.95
106733090--106733123
6
5.3
6
86
13
50
0
20
0
79
0.73
106733083--106733123
12
3.2
13
86
10
57
0
24
0
75
0.80
106733184--106733212
15
1.9
15
100
0
58
41
3
0
55
1.17
106741644--106741703
28
2.1
28
81
0
66
23
25
23
28
2.00
106741857--106741917
26
2.3
27
83
5
72
36
19
19
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106747404--106747442
20
2.1
19
90
9
62
38
20
0
41
1.53
106748082--106748158
25
3.2
23
76
10
66
0
24
6
68
1.13
106748080--106748115
17
2.0
18
89
10
56
0
27
0
72
0.85
106748089--106748136
21
2.3
21
82
13
55
0
27
4
68
1.07
106748191--106748215
5
5.0
5
100
0
50
60
0
0
40
0.97
106752294--106752403
26
4.2
26
97
0
184
33
5
24
36
1.79
106754189--106754475
137
2.1
137
96
0
529
24
18
25
31
1.98
106758261--106758344
26
3.2
26
91
0
132
33
7
23
35
1.82
106763197--106763235
21
1.9
19
90
10
60
0
25
0
74
0.82
106763199--106763247
25
2.0
25
88
8
73
0
24
2
73
0.94
106763204--106763253
21
2.4
21
83
6
57
2
24
2
72
1.06
106763200--106763253
25
2.2
25
83
9
67
1
24
1
72
1.05
106763308--106763340
5
6.6
5
100
0
66
60
0
0
39
0.97
106763724--106764619
446
2.0
446
100
0
1792
37
11
16
34
1.85
106773133--106773202
14
4.4
14
73
25
59
37
10
17
35
1.83
106773114--106773223
33
3.2
33
88
10
166
37
10
17
35
1.83
106773114--106773225
19
6.2
19
82
16
148
37
9
16
35
1.82
106773104--106773228
33
3.6
35
79
15
136
36
10
16
36
1.82
106774923--106774970
24
2.0
24
100
0
96
37
12
16
33
1.86
106782794--106782828
17
2.0
18
88
5
54
17
40
25
17
1.90
106786287--106786337
14
3.6
14
78
0
57
39
0
39
21
1.54
106786298--106786346
21
2.3
21
75
0
53
38
0
38
22
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106786316--106786344
7
4.1
7
100
0
58
44
0
27
27
1.54
106786287--106786356
35
2.0
36
82
2
88
41
1
35
21
1.62
106795127--106795255
61
2.2
58
81
14
144
53
1
1
43
1.19
106795182--106795250
26
2.8
24
77
4
75
56
1
1
40
1.17
106798424--106798632
11
17.9
11
65
26
53
33
3
2
60
1.27
106798426--106798635
7
30.1
7
66
26
51
33
3
2
60
1.28
106798425--106798536
19
6.4
18
69
25
57
31
2
2
63
1.22
106798434--106798584
7
24.0
6
67
25
57
31
2
3
62
1.25
106798542--106798597
28
2.0
28
82
6
69
37
3
3
55
1.35
106798423--106798635
13
16.1
13
65
24
67
32
3
2
61
1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373