Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  99  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32099215--32099271
15
3.9
15
90
2
89
36
0
12
50
1.40
32105102--32105255
42
3.6
42
76
8
143
29
15
23
31
1.95
32108686--32108810
62
2.0
62
90
3
198
24
16
21
37
1.93
32117872--32117897
2
13.0
2
100
0
52
0
50
0
50
1.00
32120267--32120308
22
2.0
21
86
13
59
9
11
4
73
1.22
32120277--32120315
20
2.0
20
85
10
53
12
10
7
69
1.37
32121792--32121840
21
2.3
21
96
0
89
28
4
6
61
1.38
32125776--32125898
44
2.8
44
85
4
151
19
18
29
32
1.96
32129479--32129534
27
2.1
27
93
0
94
42
3
17
35
1.67
32133392--32133416
10
2.5
10
100
0
50
8
20
8
64
1.46
32137718--32137742
10
2.5
10
100
0
50
8
20
8
64
1.46
32141068--32141122
3
18.3
3
96
0
101
32
1
0
65
1.03
32142629--32142680
26
2.0
26
96
0
95
40
9
0
50
1.35
32147997--32148042
14
3.2
14
77
22
51
34
2
13
50
1.53
32148138--32148165
14
2.0
14
100
0
56
42
7
14
35
1.73
32150840--32150914
37
2.0
37
92
0
123
29
9
10
50
1.68
32152738--32152817
33
2.4
33
81
4
90
15
15
20
50
1.79
32152792--32152858
35
1.9
35
87
0
98
16
14
17
50
1.78
32152798--32152870
35
2.1
35
84
0
92
16
19
16
47
1.82
32155352--32155383
14
2.4
13
90
10
55
18
6
12
62
1.50
32156438--32156547
41
2.6
42
88
1
159
50
24
2
22
1.62
32156432--32156564
41
3.2
41
72
14
121
45
24
3
26
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32160538--32160689
40
3.8
40
90
0
241
25
23
25
25
2.00
32160540--32160718
40
4.5
40
83
4
220
26
24
25
24
2.00
32188161--32188193
10
3.3
10
100
0
66
21
12
27
39
1.88
32198519--32198579
30
2.1
30
90
3
97
34
22
16
26
1.95
32202526--32202567
21
2.0
22
85
4
59
26
28
30
14
1.95
32204321--32204362
20
2.1
20
86
0
57
35
11
2
50
1.52
32206825--32206886
28
2.2
27
78
13
63
29
14
6
50
1.68
32209880--32209954
29
2.6
29
80
0
78
25
29
21
24
1.99
32210194--32210224
8
3.9
8
100
0
62
9
25
25
38
1.86
32211403--32211434
16
2.0
16
100
0
64
6
6
37
50
1.53
32232390--32232504
29
4.0
28
79
8
106
29
29
14
26
1.95
32232384--32232481
29
3.4
29
80
6
110
28
29
14
27
1.95
32236785--32236854
27
2.6
27
95
2
113
31
28
12
27
1.93
32236785--32236882
28
3.5
28
90
2
135
31
28
13
26
1.94
32244943--32245012
27
2.6
27
95
2
113
31
28
12
27
1.93
32244943--32245040
28
3.5
28
90
2
135
31
28
13
26
1.94
32249435--32249466
11
2.6
13
80
19
50
21
6
0
71
1.07
32250954--32250985
16
2.0
16
93
0
55
53
0
0
46
1.00
32250954--32250988
17
2.1
16
89
5
52
54
0
0
45
0.99
32251628--32251662
3
11.7
3
93
0
61
31
2
0
65
1.07
32251676--32251721
22
2.1
22
100
0
92
47
4
17
30
1.67
32253651--32253748
46
2.2
45
80
9
101
33
10
10
45
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32253721--32253757
19
2.0
19
89
5
58
24
5
10
59
1.52
32265821--32265865
20
2.2
20
84
0
54
37
13
2
46
1.55
32267992--32268169
27
6.6
27
79
3
160
28
29
16
25
1.97
32268013--32268168
82
1.9
81
82
3
197
27
29
17
25
1.97
32275834--32276011
27
6.6
27
84
3
205
29
28
15
26
1.96
32275855--32276010
82
1.9
81
88
3
233
29
28
15
26
1.96
32283815--32283991
27
6.5
27
84
3
203
29
27
15
27
1.96
32283835--32283990
82
1.9
81
88
3
233
29
28
15
26
1.96
32287279--32287336
20
3.1
19
80
9
57
43
0
29
27
1.55
32293238--32293413
87
2.0
87
98
0
343
30
19
6
43
1.77
32295415--32295441
4
6.8
4
100
0
54
77
0
22
0
0.76
32303234--32303331
51
1.9
52
93
2
171
46
17
8
27
1.76
32317908--32317986
27
2.9
28
77
15
87
55
0
1
43
1.07
32318279--32318382
29
3.5
29
71
5
91
23
14
25
37
1.92
32318267--32318394
60
2.1
60
85
0
166
21
14
25
39
1.91
32320453--32320485
16
2.1
16
94
0
57
51
27
6
15
1.66
32324421--32324645
40
5.7
40
84
5
269
24
21
28
25
1.99
32324495--32324678
80
2.3
80
83
5
214
26
21
27
24
1.99
32324421--32324678
119
2.2
119
79
6
265
25
21
27
25
1.99
32336104--32336157
24
2.2
24
83
6
65
53
9
0
37
1.33
32337055--32337096
19
2.2
20
83
12
52
40
0
0
59
0.97
32337460--32337498
20
2.0
19
90
5
60
71
0
28
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32338700--32338733
16
2.1
17
88
5
52
38
0
29
32
1.58
32339413--32339475
31
2.0
31
93
0
108
38
20
19
22
1.94
32341522--32341608
21
4.0
22
74
5
70
18
20
22
37
1.94
32343148--32343197
20
2.5
20
96
0
91
12
32
36
20
1.89
32344386--32344495
43
2.6
43
78
7
116
32
20
17
29
1.96
32347729--32347899
46
3.7
45
77
12
195
29
27
21
22
1.99
32347734--32347903
92
1.8
93
93
1
297
28
28
21
21
1.99
32349338--32349414
37
2.1
37
95
4
138
42
15
14
27
1.85
32353480--32353524
22
2.0
22
95
0
81
44
6
15
33
1.73
32358388--32358468
27
3.0
27
83
1
108
37
9
20
32
1.86
32358394--32358477
28
3.0
28
80
1
98
38
10
20
30
1.87
32362867--32362923
17
3.4
17
75
4
53
50
0
3
45
1.18
32364183--32364222
20
2.0
20
90
0
62
35
15
17
32
1.91
32374358--32374389
15
2.1
15
94
0
55
18
9
6
65
1.42
32387852--32387926
39
1.9
39
83
5
98
36
10
0
53
1.36
32388333--32388391
30
2.0
30
96
0
109
30
3
8
57
1.45
32388475--32388514
18
2.2
18
86
8
55
20
0
12
67
1.22
32391394--32391463
21
3.2
21
66
25
54
38
25
14
21
1.91
32392587--32392623
3
12.0
3
94
5
65
64
0
32
2
1.07
32393769--32393899
65
2.0
65
96
0
244
35
14
19
31
1.91
32394054--32394326
46
5.8
47
73
10
170
27
18
28
24
1.98
32395510--32395569
30
2.1
29
81
12
70
28
6
16
48
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32395576--32395685
58
2.0
53
82
10
132
20
10
21
46
1.81
32397152--32397394
43
5.7
43
86
1
301
30
27
17
25
1.97
32399260--32399313
27
2.0
27
100
0
108
33
11
18
37
1.86
32399992--32400192
89
2.3
89
91
0
321
43
15
20
20
1.88
32401605--32401658
7
7.6
7
77
4
54
48
27
1
22
1.61
32401605--32401653
14
3.4
14
83
5
62
46
30
2
20
1.62
32402140--32402279
40
3.6
39
82
8
164
30
22
18
28
1.97
32402316--32402444
40
3.2
40
76
11
138
27
20
18
33
1.96
32404979--32405021
13
3.3
13
83
9
52
53
6
0
39
1.28
32406881--32406915
3
11.7
3
100
0
70
68
0
0
31
0.90
32415866--32415917
23
2.3
23
78
15
54
23
1
3
71
1.13
32430122--32430163
21
2.0
21
85
0
57
23
42
11
21
1.86
32444826--32444902
40
1.9
40
92
5
129
36
18
20
24
1.95
32446920--32447328
201
2.0
201
99
0
809
40
16
22
20
1.91
32447962--32448038
40
1.9
40
89
5
120
36
16
20
25
1.94
32453305--32453531
40
5.7
40
96
1
384
22
26
20
30
1.98
32477183--32477358
46
3.8
45
78
12
196
21
20
28
29
1.98
32477180--32477351
93
1.8
93
93
0
299
21
20
29
28
1.98
32480827--32481050
27
8.3
27
82
3
209
28
15
17
37
1.91
32480826--32481016
81
2.3
80
83
3
231
28
15
17
37
1.91
32482950--32483170
40
5.6
40
81
3
216
25
23
25
25
2.00
32484662--32484716
18
3.1
19
84
10
71
21
20
12
45
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32487669--32487772
28
3.7
28
78
0
100
28
23
10
37
1.88
32492943--32493057
43
2.7
42
74
16
128
24
18
26
31
1.97
32500355--32500441
27
3.2
27
91
0
138
35
18
19
26
1.95
32500443--32500830
27
14.4
27
76
6
248
41
18
7
31
1.80
32500594--32500803
55
3.9
53
77
9
165
43
18
6
31
1.75
32501057--32501185
41
3.1
41
81
3
116
24
17
28
29
1.97
32501079--32501190
41
2.7
41
88
0
170
22
22
26
28
1.99
32501335--32501396
22
2.8
22
80
7
72
24
25
19
30
1.98
32503400--32503605
27
7.7
26
79
9
182
38
17
11
33
1.85
32503387--32503590
80
2.5
81
84
5
263
37
18
10
32
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373