Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  363  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120183455--120183565
47
2.4
47
81
6
136
36
22
15
26
1.94
120185071--120185108
19
2.0
20
89
5
60
47
0
2
50
1.15
120186956--120187004
22
2.3
22
82
10
57
18
4
14
63
1.46
120187030--120187088
27
2.2
27
81
6
66
57
3
6
32
1.41
120187044--120187097
27
2.0
26
92
3
90
59
3
5
31
1.38
120189667--120189710
22
2.0
22
95
0
79
31
2
18
47
1.61
120197435--120197476
5
8.2
5
89
5
66
40
16
2
40
1.62
120200181--120200358
35
5.1
35
82
4
207
35
22
12
28
1.91
120204730--120204771
19
2.2
19
86
0
57
66
0
2
30
1.04
120211875--120211900
12
2.2
12
100
0
52
30
15
23
30
1.95
120214602--120214660
31
1.9
31
93
3
102
47
11
6
33
1.67
120217590--120217663
29
2.5
30
76
6
71
27
5
5
62
1.39
120217642--120217693
24
2.2
24
86
6
72
25
1
9
63
1.35
120231803--120231895
18
5.2
18
88
0
141
31
15
24
29
1.95
120231803--120231895
36
2.6
36
91
0
159
31
15
24
29
1.95
120243811--120243868
18
3.4
18
68
18
61
43
17
6
32
1.75
120245337--120245374
14
2.6
15
84
16
53
57
2
0
39
1.12
120246499--120246633
58
2.3
57
84
5
173
42
2
2
51
1.29
120246713--120246752
16
2.5
16
88
8
55
30
25
7
37
1.83
120259474--120259548
11
6.9
11
69
3
53
40
17
2
40
1.64
120259481--120259548
22
3.1
22
78
4
75
36
17
2
42
1.65
120264888--120264921
16
2.1
17
88
5
52
35
2
29
32
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120269400--120269481
21
3.7
23
77
9
91
14
20
25
39
1.91
120269399--120269459
23
2.8
21
78
9
77
14
22
27
34
1.94
120272041--120272295
126
2.0
126
94
1
449
27
20
17
34
1.95
120272808--120272865
19
3.0
20
90
5
93
44
18
1
34
1.60
120272984--120273023
15
2.6
16
84
8
64
50
27
0
22
1.50
120285783--120285823
21
2.0
21
85
9
57
36
0
0
63
0.95
120289151--120289194
18
2.5
19
85
10
58
70
0
0
29
0.88
120289167--120289212
21
2.2
21
84
0
56
60
4
2
32
1.28
120291000--120291107
30
3.3
30
68
26
76
59
4
30
5
1.41
120291229--120291284
27
2.1
27
86
0
76
64
0
32
3
1.11
120291063--120291598
93
5.8
92
82
8
617
54
3
32
8
1.49
120291417--120291461
12
3.5
12
77
16
54
62
0
31
6
1.21
120291063--120291634
177
3.2
174
86
6
711
55
3
32
8
1.48
120291586--120291634
12
3.8
12
75
15
53
65
0
30
4
1.11
120298541--120298613
34
2.1
34
97
0
137
52
9
5
32
1.57
120304528--120304568
21
2.0
21
90
0
64
19
29
21
29
1.98
120311085--120311164
31
2.7
29
73
9
72
53
6
11
28
1.60
120313957--120313993
19
1.9
19
88
0
56
45
0
0
54
1.00
120314071--120314115
23
2.0
23
86
0
63
55
0
0
44
0.99
120314093--120314117
13
1.9
13
100
0
50
52
0
0
48
1.00
120315040--120315122
42
2.0
43
87
2
123
25
25
13
36
1.92
120315050--120315183
42
3.0
42
80
10
126
29
25
13
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120315089--120315183
49
2.0
48
91
2
154
31
26
13
28
1.94
120315282--120315488
31
6.8
31
82
4
251
27
25
16
29
1.97
120315468--120315592
50
2.5
51
85
2
171
27
21
13
37
1.91
120318771--120318833
21
2.9
22
84
13
69
55
7
0
36
1.29
120318781--120318821
20
2.0
21
85
4
57
58
7
0
34
1.26
120318783--120318833
20
2.6
21
79
17
56
58
5
0
35
1.22
120318845--120318930
22
3.7
21
71
28
68
60
6
2
30
1.35
120319135--120319174
22
2.0
20
85
14
55
65
0
2
32
1.06
120319525--120319557
17
1.9
17
88
11
50
27
0
3
69
1.03
120320933--120320963
11
2.8
11
95
0
53
32
6
32
29
1.83
120328774--120328944
50
3.4
50
90
0
261
37
16
21
24
1.93
120328926--120329043
31
3.8
31
90
0
191
27
18
27
27
1.98
120329195--120329351
42
3.7
42
92
2
244
31
14
26
28
1.95
120331182--120331229
23
2.0
24
88
11
73
62
0
0
37
0.95
120335587--120335636
25
2.0
25
92
7
84
60
16
8
16
1.58
120338250--120338278
10
2.9
10
100
0
58
0
37
0
62
0.96
120351626--120351704
9
8.8
9
80
5
97
44
20
8
26
1.80
120351626--120351704
36
2.2
37
90
6
135
44
20
8
26
1.80
120351727--120351765
6
6.2
6
82
11
51
17
0
5
76
0.96
120369838--120369911
29
2.5
30
82
10
89
50
9
8
32
1.64
120383244--120383277
17
2.0
17
94
0
59
44
50
0
5
1.26
120387883--120387916
17
2.0
17
94
0
59
44
50
0
5
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120388166--120388202
18
2.1
18
90
5
58
64
2
0
32
1.07
120388168--120388245
30
2.6
30
80
13
79
60
2
1
35
1.19
120391294--120391328
17
2.1
17
89
5
54
42
0
0
57
0.99
120403919--120403955
19
1.9
20
88
5
58
29
2
5
62
1.31
120421403--120421447
21
2.0
21
83
8
54
24
2
6
66
1.27
120421414--120421446
14
2.4
14
85
5
50
24
0
3
72
0.98
120428761--120428881
63
1.9
63
85
6
165
23
14
25
36
1.93
120432527--120432810
59
4.7
58
67
18
150
43
2
4
49
1.36
120432520--120432810
120
2.4
122
89
4
462
43
2
4
49
1.35
120432754--120432790
19
2.0
19
85
15
51
45
0
0
54
1.00
120432955--120433045
45
2.0
45
85
2
121
37
28
6
27
1.82
120433026--120433094
16
4.2
16
96
3
129
37
37
0
24
1.56
120433026--120433094
33
2.1
32
97
2
129
37
37
0
24
1.56
120433384--120433435
16
3.2
16
94
0
86
28
0
36
34
1.58
120433416--120433510
45
2.1
44
88
1
136
34
5
27
32
1.79
120433648--120433702
25
2.2
25
84
9
69
52
1
0
45
1.11
120433833--120433993
47
3.6
46
69
18
140
48
3
3
45
1.34
120440243--120440276
18
1.9
18
88
5
52
23
8
2
64
1.36
120443783--120443830
19
2.4
21
74
19
57
66
0
0
33
0.92
120444237--120444270
16
2.1
16
100
0
68
58
5
0
35
1.22
120445256--120445280
5
5.0
5
100
0
50
60
0
0
40
0.97
120451152--120451196
22
2.0
23
87
12
67
62
4
6
26
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120453257--120453401
44
3.3
43
71
18
136
22
18
20
37
1.94
120453189--120453412
88
2.6
87
84
5
272
21
20
20
37
1.94
120453247--120453412
88
1.9
88
93
0
287
22
19
20
36
1.95
120459472--120459627
51
3.1
51
91
0
249
28
23
15
32
1.95
120463169--120463291
51
2.2
57
76
18
159
33
14
23
28
1.94
120463184--120463297
51
2.2
51
95
0
201
33
14
22
29
1.93
120469676--120469720
22
2.0
23
87
12
67
62
4
6
26
1.39
120475506--120475548
22
2.0
22
81
9
52
23
2
0
74
0.93
120475555--120475595
12
3.4
12
78
21
50
56
0
0
43
0.99
120476039--120476254
85
2.6
83
83
4
263
28
18
14
38
1.90
120477364--120477426
29
2.2
29
86
11
85
33
1
1
63
1.13
120483426--120483461
17
2.1
17
100
0
72
55
0
0
44
0.99
120489963--120490007
21
2.1
21
84
8
56
55
0
8
35
1.31
120490868--120490905
10
3.6
10
92
7
58
86
0
13
0
0.56
120496257--120496290
3
11.3
3
93
0
59
29
0
2
67
1.05
120500083--120500432
188
1.9
188
92
1
585
36
21
17
24
1.94
120502734--120502946
47
4.6
45
76
13
184
24
28
18
28
1.98
120502690--120503040
94
3.8
94
79
7
326
23
29
19
27
1.98
120511251--120511445
93
2.1
92
87
4
277
44
4
4
46
1.44
120511478--120511511
17
2.0
17
94
0
59
44
5
0
50
1.26
120511478--120511516
17
2.4
16
87
8
53
43
5
0
51
1.24
120511482--120511521
17
2.3
18
83
12
57
47
5
0
47
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120511601--120511652
15
3.6
15
80
12
56
44
0
1
53
1.11
120511477--120511768
120
2.4
120
90
5
450
40
2
5
50
1.41
120511550--120511733
59
3.1
59
65
21
148
41
2
7
49
1.42
120511871--120511905
18
2.0
17
88
5
52
45
0
0
54
0.99
120511706--120511941
75
3.1
75
65
16
194
45
2
3
47
1.36
120511705--120512018
154
2.0
154
95
1
524
46
5
3
44
1.42
120512138--120512176
16
2.4
16
86
0
51
28
33
2
35
1.71
120512151--120512207
16
3.6
16
95
0
87
33
36
0
29
1.58
120515447--120515486
14
2.8
14
82
17
55
27
2
7
62
1.35
120521441--120521480
18
2.2
18
86
8
55
62
0
2
35
1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373