Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  321  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107946689--107946743
29
1.9
29
85
10
78
32
10
27
29
1.91
107946641--107946792
73
2.0
78
87
10
226
32
8
28
30
1.87
107946715--107946865
49
3.3
46
81
13
161
33
7
29
29
1.86
107946608--107946836
122
1.9
120
90
3
361
31
9
29
29
1.88
107946734--107946871
44
3.0
47
82
6
165
31
9
30
28
1.88
107946984--107947058
36
2.1
37
85
7
100
22
16
32
29
1.95
107948890--107949062
40
4.3
43
84
14
230
21
14
34
28
1.93
107949437--107949543
35
3.0
37
79
15
127
28
20
27
24
1.99
107949383--107949521
38
3.7
37
80
14
144
29
20
26
23
1.99
107949538--107949637
37
2.7
38
78
9
109
27
21
25
27
1.99
107973048--107973631
205
2.8
205
92
1
938
31
17
21
28
1.97
107975297--107975385
30
3.0
30
77
8
83
30
4
4
60
1.36
107975350--107975375
12
2.2
12
100
0
52
34
0
7
57
1.27
107977212--107977318
45
2.4
45
87
0
151
41
18
18
21
1.91
107977296--107977320
12
2.1
12
100
0
50
40
20
24
16
1.91
107984275--107984311
15
2.7
15
84
16
53
54
0
0
45
1.00
107990902--107991009
26
4.2
26
92
0
180
35
24
8
32
1.85
107993239--107993475
43
5.5
43
85
4
255
32
25
16
26
1.96
107993246--107993475
85
2.7
84
84
4
266
30
26
16
26
1.97
107993493--107993540
22
2.2
22
85
10
64
39
2
0
58
1.10
107994984--107995014
15
2.0
16
93
6
55
38
6
3
51
1.44
107997519--107997553
3
11.7
3
100
0
70
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107998107--107998240
72
1.9
72
87
3
198
49
4
34
11
1.60
107998775--107998894
7
17.0
7
74
14
61
40
38
0
20
1.59
107998848--107998919
28
2.6
28
82
8
76
41
33
2
22
1.68
107998944--107998997
14
3.9
14
82
0
63
44
31
1
22
1.63
107999435--107999599
40
4.1
40
84
3
206
26
22
21
29
1.99
107999435--107999599
80
2.1
80
87
2
233
26
22
21
29
1.99
108006624--108006662
15
2.6
16
84
8
55
53
0
7
38
1.30
108008972--108009078
43
2.5
43
87
3
144
32
26
15
25
1.96
108010569--108010632
21
3.0
21
95
0
110
14
23
18
43
1.86
108020657--108020689
11
3.0
11
100
0
66
63
0
9
27
1.24
108022234--108022268
18
1.9
18
94
0
61
48
14
11
25
1.77
108023216--108023292
22
3.5
22
77
10
77
44
20
20
14
1.86
108023820--108023868
19
2.5
20
80
3
55
22
16
0
61
1.34
108023978--108024012
14
2.5
14
95
0
61
40
5
22
31
1.78
108024314--108024348
16
2.4
14
90
9
52
60
0
0
40
0.97
108024969--108025007
14
2.8
14
88
0
51
30
15
10
43
1.80
108026268--108026316
25
2.0
25
83
0
62
38
10
10
40
1.73
108027521--108027617
40
2.5
39
78
8
110
30
29
23
15
1.95
108027823--108027893
28
2.6
27
74
14
65
46
23
0
29
1.53
108028633--108028663
16
1.9
16
93
0
53
16
9
0
74
1.07
108032351--108032415
33
2.0
33
93
0
112
64
0
3
32
1.09
108032640--108032964
174
1.9
174
87
2
483
30
12
9
47
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108034219--108034270
3
17.3
3
100
0
104
67
0
0
32
0.91
108034573--108034617
16
2.7
17
86
3
65
46
42
0
11
1.39
108035831--108035902
6
12.0
6
76
16
69
29
5
0
65
1.15
108035831--108035902
9
8.0
9
75
17
69
29
5
0
65
1.15
108035831--108035902
21
3.3
21
85
11
99
29
5
0
65
1.15
108036059--108036169
3
37.0
3
71
15
61
28
5
4
61
1.38
108039572--108039653
26
3.2
26
94
0
146
31
6
25
36
1.81
108041970--108042011
19
2.2
19
87
8
59
26
21
7
45
1.77
108054812--108054848
19
1.9
19
100
0
74
24
5
16
54
1.63
108057653--108057748
27
3.6
27
78
5
97
32
27
13
27
1.94
108057892--108057981
32
2.8
33
80
9
105
42
25
3
28
1.71
108059412--108059451
19
2.1
19
85
0
53
35
5
17
42
1.71
108059687--108059733
20
2.3
20
81
0
58
61
2
4
31
1.27
108068587--108068626
20
2.0
20
85
5
53
42
0
7
50
1.30
108073492--108073621
67
1.9
67
90
0
206
47
6
13
31
1.70
108080109--108080169
23
2.7
23
100
0
122
37
14
13
34
1.85
108080469--108080544
30
2.5
30
76
0
80
19
10
9
60
1.56
108080626--108080976
4
82.2
4
67
22
121
24
1
19
53
1.55
108080719--108080858
5
28.2
5
73
19
100
22
1
19
57
1.49
108080700--108080835
70
2.0
69
88
7
204
22
0
19
58
1.44
108080698--108080853
37
4.3
36
79
14
162
22
1
18
57
1.47
108081319--108081377
25
2.4
24
83
13
75
28
0
1
69
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108084717--108084752
17
2.1
18
89
5
56
63
0
5
30
1.17
108084971--108085050
33
2.4
33
85
0
106
26
12
47
13
1.79
108084972--108085063
33
2.8
31
76
18
87
28
11
44
15
1.81
108087652--108087701
9
5.0
10
76
13
50
0
32
0
68
0.90
108087652--108087693
20
2.1
20
86
8
59
0
30
0
69
0.89
108087650--108087696
18
2.6
18
86
10
60
0
31
0
68
0.90
108089818--108089956
42
3.3
42
77
0
152
44
17
20
16
1.87
108089818--108089964
21
7.0
21
69
0
78
44
17
21
17
1.87
108090041--108090088
24
2.0
24
91
0
78
18
29
8
43
1.79
108090131--108090370
129
1.9
129
100
0
480
45
12
5
36
1.66
108097700--108097731
13
2.5
13
94
0
55
31
0
12
56
1.37
108097826--108098117
50
5.7
50
88
3
397
26
24
30
19
1.98
108117901--108117971
29
2.4
29
73
13
74
43
1
4
50
1.30
108125429--108125472
20
2.2
20
84
15
56
20
2
0
77
0.88
108126222--108126414
97
1.9
99
84
10
261
31
17
23
27
1.97
108127647--108127787
27
5.2
27
78
11
146
37
24
21
16
1.93
108127665--108127787
54
2.3
54
94
0
210
35
24
23
16
1.94
108129376--108129458
26
3.2
26
98
0
157
36
25
7
31
1.83
108129790--108129840
24
2.1
24
100
0
102
17
19
19
43
1.89
108134681--108134839
27
5.9
27
82
11
184
33
22
25
18
1.96
108134699--108134839
54
2.6
54
93
2
239
34
24
24
17
1.96
108136426--108136507
26
3.2
26
94
0
137
36
23
7
32
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108136462--108136514
26
2.2
23
83
12
63
33
22
3
39
1.72
108137089--108137118
15
2.0
15
100
0
60
46
0
13
40
1.43
108137144--108137175
10
3.3
10
95
4
57
31
6
0
62
1.20
108146891--108146948
30
1.9
30
82
6
73
17
22
34
25
1.96
108148467--108148501
3
11.7
3
93
0
61
28
0
2
68
1.04
108148626--108148656
16
1.9
16
93
0
53
74
0
9
16
1.07
108151130--108151155
13
2.0
13
100
0
52
15
30
38
15
1.88
108151370--108151399
16
1.9
16
93
6
53
6
13
13
66
1.43
108155660--108155824
62
2.6
62
83
8
174
34
7
12
45
1.70
108156294--108156339
6
7.7
6
82
0
56
6
34
39
19
1.78
108156294--108156339
18
2.6
18
92
0
74
6
34
39
19
1.78
108156985--108157021
14
2.6
14
91
0
56
37
5
21
35
1.77
108159028--108159066
19
2.1
18
85
4
51
2
35
2
58
1.25
108162990--108163038
25
2.0
25
84
4
64
63
8
0
28
1.23
108163002--108163047
25
1.9
23
86
8
65
63
8
0
28
1.24
108165334--108165364
14
2.1
15
94
5
55
77
0
22
0
0.77
108166875--108166979
53
2.0
54
84
5
142
27
17
33
21
1.96
108172590--108172614
13
1.9
13
100
0
50
24
24
24
28
2.00
108174051--108174200
26
6.0
24
66
16
65
20
25
20
33
1.97
108174097--108174238
74
1.9
73
81
4
169
19
24
21
34
1.96
108174096--108174251
25
6.4
24
67
16
88
18
24
21
35
1.95
108176672--108176733
27
2.3
27
85
0
79
33
33
6
25
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108181189--108181276
29
3.0
29
85
9
115
19
38
1
40
1.59
108184952--108184994
2
21.5
2
100
0
86
51
48
0
0
1.00
108188729--108188813
27
3.3
27
74
15
97
32
8
18
40
1.81
108188711--108188813
51
2.0
51
94
0
179
31
9
18
40
1.83
108188711--108188787
24
3.1
24
72
17
66
29
9
18
42
1.81
108190954--108190994
2
20.5
2
100
0
82
0
0
48
51
1.00
108191867--108191894
6
4.7
6
100
0
56
35
0
0
64
0.94
108191872--108191912
21
2.0
20
85
4
55
39
0
0
60
0.96
108198407--108198447
20
2.0
20
100
0
82
36
29
14
19
1.92
108200640--108200664
9
2.8
9
100
0
50
20
24
0
56
1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373