genome.fa.s8.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  158  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52669088--52669360	46	5.9	46	90	1	352	41	13	23	21	1.89
52678583--52678719	44	3.2	43	81	7	154	32	27	16	23	1.96
52684651--52684820	43	4.0	43	74	6	157	27	14	24	32	1.95
52691127--52691237	27	4.2	26	83	5	132	36	21	23	18	1.94
52692631--52692682	24	2.2	24	96	0	95	19	42	3	34	1.69
52698099--52698336	48	4.9	47	85	3	287	25	29	18	26	1.98
52698099--52698333	96	2.4	98	89	2	341	25	29	18	26	1.98
52699453--52699505	24	2.1	26	82	6	65	32	16	0	50	1.46
52713404--52713445	20	2.1	20	86	0	57	33	4	26	35	1.77
52728333--52728410	23	3.3	23	70	12	61	30	19	23	26	1.98
52741046--52741217	47	3.7	45	81	12	163	23	28	18	29	1.98
52741046--52741219	46	3.7	47	81	11	189	22	28	18	29	1.98
52741046--52741219	94	1.9	94	87	4	262	22	28	18	29	1.98
52741562--52741645	30	2.8	30	96	0	150	33	27	10	28	1.90
52742529--52742589	22	2.7	22	76	11	70	6	6	27	59	1.48
52742557--52742597	21	1.9	22	85	5	57	7	4	26	60	1.43
52742606--52742630	11	2.3	11	100	0	50	0	0	32	68	0.90
52742891--52742921	15	2.1	15	93	0	53	35	12	16	35	1.87
52747419--52747449	16	1.9	16	93	0	53	83	0	16	0	0.64
52748965--52749002	20	1.9	20	84	10	51	50	2	2	44	1.30
52756671--52756700	12	2.5	12	94	0	51	6	30	40	23	1.80
52760590--52760971	61	6.3	61	82	2	426	26	24	15	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52760590--52760971	122	3.1	122	85	0	512	26	24	15	32	1.96
52760590--52760971	183	2.1	183	87	1	541	26	24	15	32	1.96
52760865--52760967	29	3.4	29	73	12	100	26	23	16	33	1.95
52761081--52761215	53	2.6	53	80	8	134	28	21	10	40	1.86
52768314--52768349	10	3.5	10	85	7	54	75	0	5	19	1.00
52769287--52769330	20	2.2	20	87	0	61	47	9	2	40	1.48
52770181--52770652	42	11.3	42	84	2	590	37	22	17	21	1.94
52772572--52772761	39	4.8	39	89	4	292	23	23	28	24	1.99
52772568--52772761	79	2.5	79	88	5	302	24	22	28	24	2.00
52780609--52780800	40	4.8	40	90	1	296	23	23	29	23	1.99
52787229--52787262	14	2.3	15	85	5	52	73	2	20	2	1.09
52787610--52787741	47	2.8	48	88	1	194	34	27	15	22	1.94
52792341--52792386	7	6.6	7	84	0	56	34	0	45	19	1.51
52804019--52804096	27	2.9	28	90	5	124	33	14	23	29	1.93
52804119--52804444	27	12.0	27	77	3	201	40	17	9	32	1.82
52804691--52804769	41	1.9	41	94	0	140	24	21	26	27	1.99
52804914--52804974	22	2.8	22	78	9	61	19	24	22	32	1.97
52806533--52806710	23	7.8	23	82	5	209	24	21	24	29	1.99
52806524--52806704	69	2.6	69	89	4	260	23	21	24	30	1.99
52809558--52809600	8	5.4	8	97	0	77	34	2	25	37	1.69
52814074--52814144	33	2.1	34	84	2	90	28	26	19	25	1.99
52814508--52814595	27	3.3	26	74	12	72	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52814523--52814695	27	6.4	27	87	0	247	23	20	20	35	1.96
52817623--52817774	27	5.6	27	92	3	232	27	13	28	30	1.94
52817623--52817774	55	2.8	55	92	0	241	27	13	28	30	1.94
52831683--52831828	37	3.9	37	93	3	240	26	31	18	23	1.97
52832030--52832223	47	4.1	47	90	0	289	25	29	11	33	1.91
52832123--52832194	22	3.1	22	64	24	58	23	29	13	33	1.93
52832145--52832224	25	3.3	25	66	16	69	30	27	8	33	1.87
52836106--52836413	40	7.7	40	94	0	508	24	29	23	23	1.99
52837959--52838152	47	4.1	47	90	0	289	25	29	11	33	1.91
52838052--52838123	22	3.1	22	64	24	58	23	29	13	33	1.93
52838074--52838153	25	3.3	25	66	16	69	30	27	8	33	1.87
52841937--52841991	24	2.2	26	83	6	69	47	32	3	16	1.64
52842271--52842310	18	2.2	18	90	0	62	40	15	15	30	1.87
52842588--52842737	43	3.5	43	73	13	121	32	24	16	27	1.96
52846093--52846261	43	4.0	41	78	10	164	24	19	25	30	1.98
52846093--52846257	85	1.9	86	84	9	223	24	19	25	30	1.98
52854716--52854763	25	1.9	25	83	8	62	41	2	6	50	1.39
52856054--52856204	43	3.5	43	76	6	162	31	23	16	27	1.96
52859393--52859436	22	2.0	22	86	8	63	54	6	0	38	1.27
52863381--52863409	14	2.0	15	93	6	51	27	0	20	51	1.47
52865638--52865783	37	3.9	37	94	0	238	26	30	18	23	1.98
52865932--52866076	49	3.0	50	90	6	226	29	24	8	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52866035--52866179	47	3.1	47	88	2	213	26	29	12	31	1.93
52870340--52870730	40	9.8	40	92	1	606	25	27	21	24	1.99
52872000--52872146	37	4.0	37	92	0	222	26	30	19	23	1.98
52872295--52872441	50	3.0	50	93	3	244	29	24	8	37	1.84
52872400--52872544	47	3.1	47	90	2	222	26	29	11	32	1.92
52884980--52885076	30	3.2	30	69	13	83	27	15	29	26	1.96
52887189--52887270	30	2.7	30	81	9	87	13	21	1	63	1.36
52887352--52887408	5	11.0	5	75	20	55	3	17	1	77	1.00
52887352--52887408	16	3.7	14	82	15	60	3	17	1	77	1.00
52887350--52887419	20	3.3	20	73	18	63	4	18	1	75	1.04
52888322--52888385	13	4.6	14	77	21	55	12	6	6	75	1.19
52888352--52888387	13	2.9	12	92	8	63	13	2	8	75	1.15
52888339--52888387	25	2.0	25	87	0	71	14	6	8	71	1.29
52890060--52890156	30	3.2	30	71	8	90	27	15	28	27	1.96
52891470--52891503	17	2.1	17	88	5	52	14	11	26	47	1.79
52892566--52892617	27	1.9	27	84	7	70	28	21	21	28	1.98
52892897--52892979	32	2.6	32	88	0	121	27	18	26	27	1.98
52895980--52896022	20	2.2	20	87	8	61	39	4	18	37	1.72
52897251--52897312	33	1.9	32	83	9	81	35	19	20	24	1.96
52898021--52898139	27	4.4	27	84	0	148	23	20	20	36	1.95
52903790--52903857	29	2.3	29	92	0	109	27	13	29	29	1.94
52906727--52906797	27	2.6	27	73	4	72	28	8	25	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52912202--52912341	67	2.0	67	86	5	190	30	22	27	18	1.97
52912273--52912324	27	2.0	26	84	3	68	34	21	26	17	1.95
52919337--52919410	29	2.6	29	78	2	78	22	16	32	28	1.96
52921082--52921348	40	6.7	40	93	1	455	22	27	20	30	1.98
52934319--52934473	43	3.6	43	70	19	115	32	22	16	27	1.96
52941671--52941707	18	2.1	18	90	5	58	18	37	29	13	1.90
52949186--52949262	27	2.9	27	81	7	97	32	15	22	29	1.95
52949213--52949272	27	2.2	27	82	5	68	35	13	23	28	1.92
52956646--52956830	40	4.7	40	80	7	200	24	22	28	25	1.99
52956701--52956863	79	2.1	79	82	6	197	26	20	28	25	1.99
52971753--52971850	43	2.3	43	83	0	124	32	23	17	26	1.96
52971778--52971860	43	1.9	43	90	0	130	32	25	14	27	1.95
52978583--52978634	21	2.5	21	83	0	68	26	25	38	9	1.86
52981472--52981719	55	4.7	53	78	8	211	35	18	24	21	1.95
52981473--52981680	55	3.8	53	80	7	240	35	16	25	22	1.95
52981480--52981680	108	1.8	110	88	4	309	34	17	24	22	1.96
52989034--52989277	55	4.6	52	76	9	210	36	17	23	22	1.95
52991924--52992090	43	3.9	43	76	3	158	33	25	13	28	1.93
52996856--52996889	17	2.0	17	100	0	68	52	17	5	23	1.66
52998046--52998092	19	2.3	20	82	10	60	51	12	0	36	1.40
53009352--53009571	40	5.6	40	86	3	295	22	26	22	27	1.99
53009352--53009571	79	2.8	80	84	4	304	22	26	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53021807--53021892	44	2.0	43	84	6	111	22	18	26	32	1.97
53024522--53024674	27	5.7	27	76	3	123	37	22	10	28	1.88
53024547--53025015	27	17.3	26	76	7	112	33	21	8	37	1.83
53024516--53024690	54	3.3	54	76	8	160	38	22	9	29	1.85
53024667--53025023	81	4.4	81	88	0	462	30	21	7	40	1.81
53024667--53025023	27	13.2	27	84	1	401	30	21	7	40	1.81
53025259--53025311	27	2.0	27	88	0	79	20	26	20	32	1.98
53025430--53025511	6	13.3	6	71	19	62	19	18	14	47	1.82
53025430--53025502	31	2.4	31	90	0	110	19	19	13	47	1.82
53028832--53028871	20	2.0	20	85	0	53	37	20	2	40	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373