Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  146  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48382201--48382376
46
3.8
46
76
11
180
21
21
28
28
1.98
48382198--48382368
93
1.8
93
88
2
263
21
21
29
28
1.98
48384253--48384297
23
2.0
23
82
8
56
51
13
4
31
1.61
48389056--48389080
12
2.1
12
100
0
50
24
24
16
36
1.94
48390223--48390269
24
2.0
24
83
8
60
19
23
6
51
1.70
48397037--48397246
28
7.5
28
93
1
332
28
11
26
33
1.92
48405057--48405238
28
6.5
28
92
1
276
28
12
26
33
1.92
48411054--48411094
16
2.5
17
76
15
50
68
0
7
24
1.15
48428930--48429026
49
2.0
49
95
0
176
43
5
23
27
1.75
48438170--48438282
27
4.2
26
83
7
127
38
23
23
15
1.93
48438170--48438282
54
2.1
54
85
3
147
38
23
23
15
1.93
48440194--48440254
30
2.0
30
100
0
122
26
22
13
37
1.91
48448914--48449183
133
2.0
133
91
0
432
37
3
22
36
1.71
48453634--48453841
28
7.5
28
95
2
350
32
29
12
25
1.93
48453634--48453841
55
3.8
55
94
1
362
32
29
12
25
1.93
48453634--48453841
111
1.9
110
96
1
389
32
29
12
25
1.93
48460518--48460591
37
2.0
37
94
0
130
44
9
14
31
1.77
48462262--48462307
23
2.0
23
91
8
76
30
13
26
30
1.93
48462273--48462317
23
2.0
23
82
8
56
26
20
24
28
1.99
48472180--48472232
26
2.0
25
86
13
72
35
1
16
45
1.59
48476861--48476899
20
2.0
20
84
0
51
38
0
2
58
1.12
48476871--48476914
21
2.2
20
87
4
61
31
2
4
61
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48476856--48476916
31
1.9
32
83
9
81
36
1
3
59
1.24
48476869--48476916
20
2.4
19
80
10
60
35
2
4
58
1.29
48481996--48482051
28
2.0
28
100
0
112
28
21
21
28
1.99
48501376--48501401
12
2.2
12
100
0
52
57
15
11
15
1.65
48505921--48505981
30
2.0
30
83
0
77
31
26
4
37
1.77
48518949--48519203
88
3.2
76
80
16
271
27
0
16
56
1.40
48518949--48519120
76
2.2
78
84
10
235
27
0
16
56
1.40
48519032--48519198
88
1.9
88
97
0
316
26
0
17
55
1.42
48519038--48519216
88
2.0
88
91
2
288
27
0
16
55
1.41
48519122--48519411
102
2.8
102
88
7
428
28
0
14
56
1.39
48519390--48519425
17
2.2
16
90
9
56
30
0
5
63
1.17
48528130--48528163
12
2.8
12
95
0
59
20
20
32
26
1.97
48529068--48529315
132
1.9
129
83
4
318
33
12
14
39
1.84
48529398--48529501
51
2.0
52
98
1
201
54
3
14
26
1.57
48529692--48529892
26
7.9
27
70
16
72
62
5
5
25
1.40
48529696--48529747
24
2.2
24
83
13
63
61
1
7
28
1.34
48529729--48529894
50
3.3
50
73
10
149
63
7
4
24
1.40
48529866--48529948
36
2.4
36
80
13
93
65
6
2
26
1.28
48530005--48530081
25
3.0
26
76
16
88
63
3
5
27
1.33
48530876--48530955
40
2.0
40
95
0
142
36
11
16
36
1.84
48531782--48532179
76
5.1
76
82
8
428
26
9
10
54
1.64
48531911--48532045
42
3.1
43
62
16
98
24
8
10
56
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48531836--48532154
161
2.0
161
90
1
505
25
9
10
54
1.64
48539181--48539206
3
8.7
3
100
0
52
69
0
0
30
0.89
48542569--48542627
26
2.3
26
79
2
66
25
10
0
64
1.25
48550786--48550856
14
4.9
14
76
10
54
60
4
2
32
1.30
48550789--48550852
27
2.3
27
84
7
76
59
4
3
32
1.34
48551039--48551174
3
47.0
3
68
16
65
58
1
7
32
1.34
48551127--48551184
21
2.8
21
73
21
59
68
0
1
29
0.99
48551782--48551838
25
2.3
25
78
3
62
26
10
0
63
1.27
48552281--48552306
13
2.0
13
100
0
52
46
0
0
53
1.00
48552895--48552921
6
4.5
6
100
0
54
85
0
14
0
0.61
48559037--48559069
16
2.0
17
94
5
59
69
6
0
24
1.10
48559295--48559333
15
2.6
15
88
8
53
61
0
10
28
1.28
48559404--48559428
12
2.1
12
100
0
50
56
0
0
44
0.99
48565852--48565896
21
2.1
21
95
0
81
0
53
20
26
1.46
48569435--48569551
9
12.3
9
77
10
117
31
0
22
45
1.58
48569439--48569551
39
3.0
38
75
20
119
30
0
22
46
1.58
48569437--48569549
57
2.0
57
89
0
172
30
0
23
46
1.58
48570537--48570575
10
3.9
10
100
0
78
30
20
0
48
1.50
48570764--48571132
183
2.0
183
100
0
738
42
15
15
26
1.86
48571203--48571232
14
2.2
13
94
5
51
36
13
0
50
1.42
48572444--48572557
37
3.0
37
81
3
129
21
11
49
17
1.78
48572444--48572571
37
3.4
36
80
7
121
24
11
47
16
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48572591--48572641
24
2.1
25
85
3
68
27
3
31
37
1.75
48573510--48573543
17
1.9
17
88
5
50
47
35
2
14
1.60
48577263--48577301
13
2.8
14
80
11
53
23
2
10
64
1.37
48583925--48583958
12
3.0
12
91
8
54
50
0
8
41
1.34
48590055--48590093
20
2.0
20
94
0
69
10
23
48
17
1.78
48591399--48591472
22
3.3
22
63
22
55
35
22
6
35
1.81
48591389--48591472
44
1.9
44
97
0
159
36
25
5
32
1.80
48594728--48594768
20
2.0
20
90
0
64
39
19
2
39
1.65
48594866--48594923
25
2.3
25
77
8
64
27
18
24
29
1.98
48594905--48595018
24
4.8
24
77
5
126
35
15
22
25
1.94
48594903--48595018
47
2.5
47
87
2
162
36
16
22
25
1.94
48605565--48605589
11
2.3
11
100
0
50
72
0
0
28
0.86
48607539--48607582
20
2.3
19
88
7
63
27
0
20
52
1.47
48608369--48608578
45
4.6
46
83
6
155
41
12
19
26
1.87
48608457--48608673
45
4.8
46
86
1
276
40
14
20
24
1.90
48608411--48608675
91
2.9
90
81
5
282
39
14
20
25
1.91
48612563--48612592
12
2.5
12
94
0
51
53
0
10
36
1.35
48614682--48615180
47
10.6
47
94
0
845
29
29
8
32
1.87
48614732--48614810
25
3.3
25
66
16
76
31
27
6
34
1.82
48634995--48635031
19
1.9
19
89
10
58
37
2
13
45
1.58
48638577--48638613
13
2.9
14
88
11
53
70
5
0
24
1.08
48638591--48638635
22
2.0
22
91
0
72
73
0
0
26
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48638597--48638634
17
2.3
16
83
16
51
73
0
0
26
0.83
48644519--48644961
224
2.0
224
94
0
787
34
19
11
34
1.88
48646133--48646300
46
3.6
46
74
15
148
26
19
30
24
1.98
48646226--48646389
46
3.5
45
79
9
168
31
15
27
25
1.96
48646132--48646389
140
1.8
140
79
4
297
29
17
28
24
1.97
48646132--48646393
47
5.6
47
74
12
166
29
17
28
24
1.97
48667723--48667763
19
2.2
18
86
4
55
24
7
4
63
1.40
48668822--48669007
40
4.7
40
87
2
259
24
26
22
26
2.00
48670267--48670307
21
2.0
21
85
9
57
36
26
2
34
1.70
48670278--48670317
21
1.9
21
84
0
53
37
25
2
35
1.69
48672912--48673130
46
4.7
48
73
19
151
28
20
28
22
1.98
48672909--48673130
94
2.4
94
78
14
237
27
20
28
22
1.99
48677211--48677266
29
1.9
28
82
13
69
14
35
26
23
1.93
48684402--48684434
13
2.5
13
95
0
57
6
42
27
24
1.78
48686619--48686885
95
2.8
95
76
13
266
26
17
32
23
1.97
48686619--48686885
46
5.7
46
74
15
217
26
17
32
23
1.97
48686612--48686783
50
3.6
48
79
13
187
28
18
31
21
1.96
48688437--48688750
95
3.3
93
80
9
314
22
28
21
28
1.99
48688435--48688750
48
6.6
48
76
8
286
22
28
21
27
1.99
48690256--48690300
20
2.2
20
96
0
81
40
6
4
48
1.49
48693022--48693249
48
4.8
48
75
5
185
28
20
28
23
1.99
48693060--48693246
96
1.9
96
82
8
229
29
18
28
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48695877--48695935
29
2.0
29
86
3
82
49
8
6
35
1.60
48697171--48697295
60
2.1
60
89
0
187
10
24
36
28
1.89
48701378--48701413
18
2.0
18
88
0
54
22
13
44
19
1.86
48703960--48704023
26
2.4
27
76
5
69
20
20
20
39
1.93
48712235--48712583
40
8.7
40
92
0
563
21
26
20
31
1.98
48720768--48721032
80
3.3
80
93
1
455
21
27
20
30
1.98
48720768--48721032
39
6.7
40
94
0
455
21
27
20
30
1.98
48737592--48737843
46
5.4
46
73
9
154
25
28
17
28
1.98
48762374--48762430
23
2.5
23
97
0
105
40
5
14
40
1.68
48777537--48777602
6
10.8
6
78
15
55
45
12
19
22
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373