Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  286  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96917902--96918198
47
6.2
48
71
18
201
32
5
5
56
1.45
96918026--96918207
73
2.5
72
74
11
169
33
4
5
56
1.42
96922091--96922135
22
2.0
22
91
0
72
26
15
6
51
1.68
96930434--96930639
74
2.8
74
87
2
272
29
15
19
35
1.92
96930602--96930869
101
2.8
94
83
8
321
25
16
18
38
1.92
96930659--96930870
101
2.1
103
90
2
338
25
16
16
42
1.87
96930508--96931005
268
1.9
264
84
6
673
26
16
19
37
1.92
96932647--96932702
22
2.6
20
81
15
67
28
3
1
66
1.19
96932871--96932900
15
1.9
16
93
6
53
33
0
0
66
0.92
96932861--96933136
26
12.3
21
67
24
99
33
3
5
56
1.42
96932905--96933064
26
6.5
26
73
16
137
33
5
6
54
1.49
96932890--96933185
47
6.2
48
71
17
206
33
5
5
56
1.45
96933013--96933194
73
2.5
72
74
11
169
33
4
5
56
1.42
96934589--96935212
315
2.0
315
94
0
1106
38
13
12
35
1.83
96935982--96936029
25
1.9
25
83
8
62
27
25
2
45
1.64
96945055--96945126
28
2.4
31
79
9
78
25
2
4
68
1.21
96947591--96947617
12
2.2
12
100
0
54
51
7
0
40
1.30
96948098--96948275
27
6.6
27
83
3
205
26
15
28
29
1.96
96948099--96948254
82
1.9
81
88
3
233
26
15
28
29
1.96
96948095--96948275
82
2.2
81
83
2
229
27
15
27
29
1.96
96955704--96955730
12
2.2
12
100
0
54
51
7
0
40
1.30
96956211--96956388
27
6.6
27
83
3
205
26
15
28
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96956212--96956367
82
1.9
81
88
3
233
26
15
28
29
1.96
96956208--96956388
82
2.2
81
83
2
229
27
15
27
29
1.96
96976570--96976610
20
2.0
20
85
4
55
14
12
7
65
1.45
96985296--96985355
29
2.1
29
90
0
93
23
13
35
28
1.92
96986185--96986277
39
2.4
39
82
10
111
41
2
8
47
1.46
96999834--96999883
25
2.0
26
84
4
66
16
8
12
64
1.49
97005746--97005872
55
2.3
56
84
8
154
37
16
24
22
1.94
97006167--97006197
16
1.9
16
93
0
53
41
0
22
35
1.54
97011880--97011940
17
3.7
16
79
10
61
14
3
4
77
1.07
97011880--97011940
22
3.0
21
75
15
56
14
3
4
77
1.07
97011880--97011935
10
5.6
10
76
16
53
14
1
5
78
1.00
97011880--97011935
18
3.4
17
85
7
62
14
1
5
78
1.00
97021891--97021933
19
2.4
17
78
14
50
20
2
16
60
1.46
97030546--97030756
27
7.8
27
81
1
190
40
19
9
29
1.83
97030546--97030754
81
2.6
81
81
6
219
41
20
9
29
1.83
97033474--97033688
102
2.1
102
92
0
358
26
6
26
41
1.78
97041840--97041990
27
5.7
26
72
12
110
40
22
8
28
1.83
97041861--97042006
54
2.7
54
80
6
170
39
19
8
31
1.83
97041861--97042008
27
5.5
26
77
10
120
39
20
8
31
1.83
97041986--97042070
27
3.1
27
83
5
91
31
21
5
41
1.77
97042022--97042076
27
2.0
27
96
0
101
34
16
3
45
1.65
97042809--97042878
25
2.8
24
86
4
95
24
21
24
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97042808--97042891
25
3.4
24
80
8
89
27
19
23
29
1.98
97043026--97043159
42
3.2
42
92
0
223
32
12
19
35
1.89
97043183--97043328
31
4.7
31
90
0
222
30
15
23
30
1.96
97045348--97045512
75
2.2
75
86
4
242
35
23
20
21
1.96
97045360--97045494
40
3.5
40
74
10
136
37
21
20
20
1.94
97046460--97046488
10
2.7
11
89
10
51
72
0
10
17
1.11
97053422--97053581
75
2.1
75
84
2
214
33
20
19
26
1.96
97058686--97058713
12
2.3
12
100
0
56
25
42
25
7
1.80
97060476--97060548
27
2.7
27
72
6
67
46
8
17
27
1.76
97060958--97061588
36
17.3
36
80
4
624
35
20
15
29
1.93
97060958--97061588
73
8.6
73
80
4
675
35
20
15
29
1.93
97060979--97061580
219
2.7
219
93
1
992
35
20
15
28
1.93
97060970--97061699
36
19.7
39
78
4
248
35
20
14
29
1.93
97061482--97061699
78
2.8
78
77
2
208
36
20
12
30
1.90
97064197--97064294
25
3.9
25
78
2
81
36
12
16
34
1.86
97081481--97081574
46
2.0
46
97
0
179
32
6
20
40
1.78
97084838--97084901
14
4.4
14
77
11
56
26
6
0
67
1.14
97084838--97084901
22
2.8
24
81
15
82
26
6
0
67
1.14
97084844--97084891
16
3.1
16
77
14
55
22
4
0
72
1.01
97085451--97085565
27
4.2
27
74
6
106
15
25
41
17
1.88
97085478--97085599
55
2.2
54
86
1
172
16
27
40
15
1.88
97085672--97085712
17
2.6
15
82
14
55
65
0
34
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97085678--97085713
17
2.2
17
90
5
56
69
0
30
0
0.89
97085824--97085876
23
2.3
23
90
0
79
47
5
3
43
1.45
97090666--97090704
17
2.3
17
86
8
53
30
10
12
46
1.75
97093288--97093631
139
2.5
138
92
2
559
27
7
6
57
1.51
97093603--97093693
11
7.8
11
71
19
60
17
5
3
73
1.16
97093639--97093695
20
3.0
20
75
19
68
12
8
5
73
1.23
97093657--97093723
15
4.3
15
88
5
98
14
8
1
74
1.13
97093610--97093707
37
2.7
37
75
20
98
18
6
3
72
1.19
97094031--97094064
11
3.1
11
91
0
50
61
11
0
26
1.30
97094116--97094180
14
4.7
13
72
18
51
0
32
1
66
1.01
97094204--97094242
14
2.7
15
80
11
55
0
38
0
61
0.96
97094387--97094426
16
2.4
17
87
8
64
12
20
10
57
1.63
97094422--97094468
24
2.0
24
95
0
85
6
17
2
74
1.12
97094643--97094672
3
10.0
3
92
0
51
63
0
3
33
1.11
97097667--97097732
33
2.0
33
93
0
114
36
1
16
45
1.57
97099276--97099373
15
5.9
15
68
21
61
48
11
9
30
1.70
97099264--97099368
35
3.0
35
98
0
201
46
10
8
34
1.69
97099293--97099354
20
3.3
20
70
21
71
43
9
9
37
1.71
97103709--97103794
45
1.9
44
92
2
145
25
13
24
36
1.93
97105227--97105265
21
1.9
21
89
5
62
20
28
38
12
1.89
97105687--97105715
4
7.2
4
100
0
58
72
0
0
27
0.85
97107116--97107157
20
2.2
19
87
12
59
30
4
0
64
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97107116--97107157
19
2.2
18
87
12
57
30
4
0
64
1.14
97107263--97107316
28
1.9
28
88
0
81
31
1
0
66
1.02
97107275--97107354
35
2.3
34
81
16
92
32
2
1
63
1.15
97107337--97107409
19
4.1
16
73
20
56
36
5
0
57
1.22
97130570--97130617
20
2.4
20
96
0
87
29
29
18
22
1.98
97149963--97150009
24
2.0
24
95
0
85
12
25
17
44
1.84
97159229--97159357
43
3.0
43
87
4
145
23
19
27
29
1.98
97159742--97159820
21
3.8
21
89
0
122
2
50
18
27
1.60
97165454--97165873
9
47.4
9
80
4
433
37
2
12
48
1.54
97165454--97165855
44
8.9
44
84
6
484
37
2
11
48
1.53
97165986--97166070
15
5.8
15
72
25
83
54
1
1
43
1.15
97165997--97166070
29
2.6
29
93
0
121
52
1
1
44
1.17
97166244--97166314
24
3.0
24
91
0
115
46
8
16
28
1.76
97166362--97166495
64
2.1
64
98
0
259
46
3
11
38
1.59
97170367--97170445
6
12.8
6
72
15
63
48
12
20
18
1.81
97170379--97170445
25
2.7
25
90
0
107
46
13
20
19
1.83
97170563--97170670
27
4.0
26
86
5
135
36
21
23
19
1.95
97171235--97171375
27
5.2
27
88
5
178
26
21
18
34
1.96
97171360--97171597
27
8.8
26
76
11
108
30
8
22
38
1.84
97171441--97171591
54
2.8
54
81
5
155
29
9
21
40
1.84
97171420--97171565
27
5.4
27
82
4
136
28
8
20
41
1.82
97172659--97173125
187
2.5
187
91
0
763
30
16
18
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97173373--97173425
28
1.9
27
81
11
63
33
5
3
56
1.41
97173582--97173611
14
2.1
14
93
0
51
46
6
0
46
1.29
97173666--97173728
22
2.9
22
79
6
58
22
1
22
53
1.54
97173708--97173771
14
4.4
15
71
15
62
28
1
18
51
1.55
97173841--97173880
21
1.9
21
89
0
62
30
2
22
45
1.66
97173851--97173893
21
2.0
21
86
0
59
37
0
20
41
1.53
97177404--97177446
23
1.9
22
85
4
59
16
6
27
48
1.71
97180382--97180429
18
2.4
19
80
16
53
50
4
2
43
1.33
97188202--97188425
126
1.8
123
87
7
337
41
3
7
47
1.49
97188202--97188430
124
1.9
120
85
11
315
41
3
7
47
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373