Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  150  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49755854--49755924
25
2.8
25
82
2
79
25
22
22
29
1.99
49756735--49756812
27
2.9
27
79
11
88
20
20
21
37
1.95
49756853--49756949
26
3.6
26
76
12
79
32
10
17
39
1.84
49756940--49757038
27
3.7
27
85
4
146
28
7
23
41
1.80
49756838--49757018
54
3.3
53
76
8
159
32
9
17
40
1.83
49757070--49757161
27
3.4
27
90
0
130
42
6
21
29
1.78
49765219--49765250
15
2.1
15
100
0
64
31
21
21
25
1.98
49765361--49765441
24
3.3
24
68
19
76
37
18
2
41
1.64
49765377--49765458
16
5.0
16
72
16
78
37
21
1
39
1.62
49765381--49765451
22
3.0
22
72
21
70
38
21
1
39
1.62
49765359--49765470
50
2.3
48
93
3
188
35
20
2
41
1.67
49765553--49765726
55
3.2
53
81
8
176
21
23
18
36
1.95
49765553--49765734
54
3.4
54
81
5
206
21
23
17
37
1.94
49765927--49766010
44
1.9
44
82
4
107
26
25
10
38
1.88
49766550--49766607
30
1.9
31
85
3
82
31
24
6
37
1.82
49768450--49768492
10
4.1
10
80
11
50
53
27
2
16
1.55
49769217--49769376
43
3.7
42
78
11
155
34
25
16
23
1.95
49771232--49771347
57
2.0
57
88
0
169
40
8
16
34
1.79
49780649--49780824
46
3.8
45
77
11
187
22
19
27
30
1.98
49787859--49787888
12
2.5
12
94
0
51
6
16
53
23
1.66
49788049--49788093
22
2.0
22
91
0
72
20
15
40
24
1.91
49796552--49796576
13
1.9
13
100
0
50
48
8
0
44
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49799778--49799939
67
2.5
66
80
6
186
28
14
32
24
1.95
49815346--49815517
67
2.6
66
81
7
170
31
16
29
22
1.96
49815370--49815553
67
2.8
64
78
8
203
28
16
30
23
1.96
49817554--49817623
34
2.1
34
94
0
122
47
17
7
28
1.74
49817719--49817747
8
3.6
8
100
0
58
27
0
34
37
1.57
49818693--49818755
6
10.7
6
89
6
94
82
1
0
15
0.74
49825977--49826096
43
2.9
41
76
13
118
23
20
28
28
1.99
49827195--49827349
27
5.7
27
86
0
211
36
20
20
22
1.95
49827196--49827349
81
1.9
81
91
0
254
37
20
19
22
1.95
49827195--49827368
54
3.2
54
88
1
242
36
19
19
24
1.95
49827199--49827367
81
2.1
81
87
0
239
36
20
18
24
1.95
49828102--49828160
27
2.2
26
84
3
73
22
23
18
35
1.96
49834767--49834966
27
7.4
27
81
4
215
36
18
20
26
1.95
49834767--49834966
54
3.7
53
87
2
274
36
18
20
26
1.95
49834767--49834966
81
2.5
80
84
3
247
36
18
20
26
1.95
49835708--49835768
27
2.3
27
82
2
70
21
24
19
34
1.96
49843346--49843461
42
2.7
43
81
6
130
23
22
28
25
1.99
49845689--49845871
79
2.3
80
84
7
230
26
27
21
24
1.99
49845668--49845871
40
5.1
40
81
8
238
25
27
21
24
1.99
49847954--49848002
25
2.0
25
83
0
62
46
10
2
40
1.49
49851261--49851386
28
4.5
28
86
0
153
36
21
25
16
1.94
49856264--49856336
36
1.9
39
91
8
125
27
6
6
58
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49868825--49868908
26
3.4
25
83
9
93
29
23
20
26
1.99
49868956--49869002
20
2.3
20
100
0
94
34
19
10
36
1.86
49875823--49875886
31
2.1
31
84
0
83
23
25
12
39
1.90
49876067--49876151
24
3.4
25
80
7
84
27
20
24
28
1.99
49876085--49876150
25
2.7
26
86
6
84
27
19
28
24
1.99
49876197--49876243
20
2.3
20
100
0
94
34
19
10
36
1.86
49881176--49881217
20
2.1
20
86
8
59
35
19
30
14
1.91
49881189--49881226
20
1.9
20
88
0
58
36
23
31
7
1.84
49883948--49884003
29
2.0
29
96
3
105
35
26
19
17
1.94
49887976--49888153
27
6.6
27
84
3
205
29
28
15
26
1.96
49887997--49888152
82
1.9
81
88
3
233
29
28
15
26
1.96
49893393--49893434
19
2.2
19
100
0
84
14
54
9
21
1.68
49894872--49895049
27
6.6
27
82
3
178
29
27
15
27
1.96
49894893--49895048
82
1.9
81
86
3
224
29
27
15
27
1.96
49897145--49897280
29
4.8
29
90
5
181
28
30
15
25
1.96
49897145--49897288
58
2.5
57
85
6
200
28
29
15
26
1.96
49901709--49901826
29
4.1
29
82
7
127
28
28
16
26
1.97
49909911--49910086
46
3.8
46
78
4
192
30
29
19
20
1.97
49912468--49912556
30
3.0
30
80
8
101
57
15
16
10
1.65
49912468--49912547
15
5.4
15
80
7
92
58
13
17
10
1.62
49912479--49912556
15
5.2
15
78
9
79
56
15
16
11
1.67
49913351--49913439
43
2.0
44
97
2
171
23
17
28
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49915618--49915789
93
1.8
93
88
0
263
27
29
20
22
1.99
49915610--49915785
46
3.8
46
78
4
183
28
28
20
22
1.98
49920522--49920588
33
2.0
33
94
0
116
46
10
22
20
1.81
49921888--49921951
30
2.1
30
94
0
110
48
17
12
21
1.80
49925809--49925845
16
2.2
17
90
4
58
8
29
16
45
1.76
49927911--49927952
21
2.0
20
82
13
50
30
28
19
21
1.97
49933615--49933639
11
2.3
11
100
0
50
32
0
0
68
0.90
49939894--49939950
24
2.4
24
80
8
64
50
14
7
28
1.68
49942699--49942910
28
7.6
28
81
3
221
30
18
26
24
1.98
49942700--49942910
56
3.8
56
87
2
273
30
18
26
24
1.98
49942699--49942910
84
2.5
83
81
6
250
30
18
26
24
1.98
49942715--49942935
111
2.0
112
79
6
243
30
19
24
24
1.98
49943913--49943952
21
1.9
21
90
10
64
47
5
10
37
1.59
49945660--49945717
23
2.5
23
97
0
107
20
32
32
13
1.92
49947047--49947146
51
2.0
51
82
7
123
36
27
15
22
1.93
49947109--49947223
43
2.7
43
81
4
135
30
31
18
20
1.96
49953915--49954179
48
5.5
46
72
11
151
29
20
27
22
1.98
49953912--49954085
48
3.7
46
75
6
152
29
19
28
22
1.98
49953912--49954085
94
1.8
95
86
6
255
29
19
28
22
1.98
49954057--49954181
49
2.5
49
81
8
139
28
23
26
21
1.99
49957332--49957549
49
4.5
49
93
3
356
27
29
8
33
1.86
49957417--49957499
27
3.3
27
63
27
72
32
30
4
32
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49957313--49957549
96
2.5
94
89
7
352
27
29
8
34
1.87
49961032--49961070
20
2.0
19
85
5
51
30
33
12
23
1.92
49965020--49965059
18
2.2
18
95
0
71
32
17
7
42
1.77
49966567--49966603
20
1.9
19
89
10
58
8
37
10
43
1.69
49976699--49976729
16
1.9
16
100
0
62
51
12
16
19
1.76
49977705--49977902
46
4.2
46
77
8
170
31
16
26
26
1.96
49977705--49977958
94
2.7
94
85
5
304
31
15
27
25
1.96
49977971--49978030
30
2.0
30
100
0
120
33
16
26
23
1.96
49982775--49982814
22
1.9
21
85
10
55
27
20
30
22
1.98
49989355--49989414
25
2.4
25
97
0
111
38
16
10
35
1.82
49991611--49991656
19
2.5
19
85
3
58
67
4
6
21
1.32
49991624--49991662
19
2.1
19
85
0
51
69
0
10
20
1.17
49993022--49993050
11
2.5
12
88
11
51
24
0
6
68
1.13
49993551--49993591
19
2.2
19
86
4
57
26
2
2
68
1.15
49997028--49997068
20
2.0
20
86
13
57
48
21
0
29
1.50
50000730--50000809
22
3.7
22
89
3
117
32
21
27
18
1.97
50001163--50001249
27
3.2
26
80
15
88
33
12
11
42
1.79
50001176--50001358
27
6.9
25
75
11
100
33
10
14
40
1.80
50001203--50001358
54
2.9
54
73
12
142
33
9
15
41
1.80
50005951--50006039
27
3.3
27
85
3
99
30
8
21
39
1.84
50010647--50010732
27
3.2
25
77
12
66
24
11
20
43
1.85
50010658--50010843
27
6.9
27
76
7
155
29
12
21
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50010658--50010852
54
3.6
55
79
10
172
28
12
22
36
1.91
50028642--50028675
13
2.6
13
85
0
50
35
17
5
41
1.74
50030234--50030374
50
2.8
50
76
5
151
31
24
18
25
1.98
50033450--50033503
27
2.0
27
85
0
72
38
16
14
29
1.89
50041328--50041379
27
1.9
27
88
0
77
36
17
17
28
1.92
50043225--50043410
41
4.6
41
89
3
252
24
23
26
24
2.00
50043227--50043380
81
1.9
82
89
4
240
24
23
26
25
2.00
50062247--50062359
44
2.6
43
82
12
149
29
29
18
23
1.98
50082158--50082327
51
3.3
51
90
1
261
29
25
14
30
1.95
50082351--50082474
52
2.4
52
89
2
196
26
22
12
38
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373