genome.fa.s8.2.7.7.80.10.50.1000.266.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  266  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90421872--90422042	46	3.7	46	77	15	201	21	21	28	28	1.98
90421869--90422037	92	1.8	92	93	2	295	21	21	29	27	1.98
90424079--90424257	51	3.5	51	84	6	222	30	14	27	27	1.95
90424079--90424255	52	3.5	52	83	7	188	30	14	27	27	1.95
90427686--90427784	50	2.0	50	84	6	128	31	25	18	25	1.97
90429312--90429414	44	2.4	43	83	4	118	33	11	21	33	1.89
90435305--90435344	21	2.0	21	90	5	64	25	27	35	12	1.92
90439356--90439861	47	10.6	47	92	1	787	34	8	28	28	1.86
90439356--90439861	96	5.3	94	91	2	823	34	8	28	28	1.86
90439356--90439861	143	3.5	142	92	1	800	34	8	28	28	1.86
90439445--90439527	27	3.3	27	63	16	77	37	4	25	32	1.77
90440862--90441076	46	4.6	46	78	4	207	22	26	19	31	1.98
90440862--90441032	94	1.8	94	89	0	270	23	26	18	31	1.97
90440862--90441076	94	2.3	94	84	3	263	22	26	19	31	1.98
90442092--90442149	25	2.3	25	93	0	98	17	18	8	55	1.67
90450972--90451184	46	4.6	46	79	11	213	29	18	27	24	1.98
90451207--90451375	49	3.5	49	76	4	155	28	19	26	25	1.99
90459364--90459522	27	5.9	27	80	14	168	34	21	23	20	1.96
90459364--90459522	54	3.0	53	87	5	223	34	21	23	20	1.96
90461951--90462305	49	7.5	46	74	13	235	30	20	25	24	1.98
90461948--90462303	98	3.8	97	78	5	270	30	20	25	24	1.99
90463683--90463855	46	3.7	46	77	11	183	21	20	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90463680--90463850	93	1.8	93	92	2	290	21	20	28	29	1.98
90471355--90471453	26	3.7	27	84	9	132	39	16	23	21	1.92
90471539--90471623	27	3.1	27	79	0	98	35	14	27	23	1.93
90473710--90473786	40	1.9	40	100	0	154	23	0	28	48	1.51
90474191--90474346	43	3.6	43	77	10	167	23	19	27	30	1.98
90480891--90481068	27	6.6	27	84	3	214	26	14	28	30	1.95
90480892--90481047	82	1.9	81	88	3	233	26	14	28	30	1.95
90480891--90481068	82	2.2	81	84	3	232	26	14	28	30	1.95
90488969--90489146	27	6.6	27	83	3	205	26	15	28	29	1.96
90488970--90489125	82	1.9	81	88	3	233	26	15	28	29	1.96
90488966--90489146	82	2.2	81	83	2	229	27	15	27	29	1.96
90492452--90492508	30	1.9	30	88	0	87	40	8	22	28	1.84
90494455--90494567	43	2.6	43	84	2	129	30	15	23	30	1.95
90497515--90497673	24	6.5	24	72	9	115	23	12	31	32	1.92
90497521--90497660	74	1.9	74	82	10	178	23	12	32	32	1.91
90500633--90500801	78	2.1	78	82	4	196	25	20	27	26	1.99
90500633--90500801	40	4.3	39	85	6	189	25	20	27	26	1.99
90514700--90514877	27	6.6	27	83	3	205	29	27	15	27	1.96
90514721--90514876	82	1.9	81	88	3	233	29	27	15	27	1.96
90517110--90517151	21	2.0	21	86	9	59	52	0	0	47	1.00
90521778--90521833	28	2.0	28	100	0	112	42	25	17	14	1.87
90524340--90524905	47	12.1	47	91	0	857	26	31	10	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90524472--90524549	25	3.2	25	63	17	65	29	26	7	35	1.84
90529123--90529585	40	11.6	40	90	2	709	25	27	22	25	2.00
90529194--90529300	23	5.2	23	60	25	67	25	27	22	25	2.00
90530979--90531544	47	12.1	47	91	0	857	26	31	10	31	1.89
90531111--90531188	25	3.2	25	63	17	65	29	26	7	35	1.84
90538548--90538598	24	2.1	24	100	0	102	19	23	17	39	1.92
90544891--90544946	11	5.5	11	71	16	57	35	12	19	32	1.89
90544880--90544946	20	3.3	20	93	0	116	34	11	20	32	1.90
90544997--90545092	23	4.1	23	90	2	156	29	20	19	30	1.97
90544996--90545094	47	2.1	46	92	3	162	30	20	20	29	1.97
90545307--90545370	31	2.1	31	90	0	101	39	15	23	21	1.92
90551589--90551664	37	2.1	36	83	11	93	52	2	3	40	1.34
90553259--90553288	15	2.0	15	100	0	60	73	13	6	6	1.24
90574029--90574202	79	2.2	79	86	4	235	24	23	27	24	2.00
90574029--90574202	40	4.4	40	88	3	237	24	23	27	24	2.00
90585163--90585337	40	4.4	40	88	2	237	24	23	27	24	2.00
90586764--90586823	29	2.1	29	93	0	102	21	23	21	33	1.97
90590109--90590145	19	2.0	19	89	5	58	18	8	0	72	1.08
90596406--90596630	40	5.7	40	82	7	235	24	27	21	25	1.99
90596562--90596639	40	1.9	41	82	10	97	26	28	20	24	1.99
90613273--90613312	14	2.9	14	96	0	71	37	25	2	35	1.69
90615029--90615142	41	2.7	41	76	8	113	25	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90617299--90617337	20	1.9	20	84	5	51	7	28	15	48	1.72
90624474--90624651	27	6.6	27	83	3	205	26	15	28	29	1.96
90624475--90624630	82	1.9	81	88	3	233	26	15	28	29	1.96
90624471--90624651	82	2.2	81	83	2	229	27	15	27	29	1.96
90632527--90632704	27	6.6	27	82	3	196	26	14	28	29	1.95
90632528--90632683	82	1.9	81	86	3	224	26	14	28	29	1.95
90632524--90632704	82	2.2	81	82	2	220	27	14	28	29	1.96
90634750--90634817	27	2.5	27	73	7	66	63	2	8	25	1.38
90638921--90638992	22	3.2	23	82	5	76	41	2	1	54	1.23
90640405--90640468	26	2.5	26	89	5	103	42	10	14	32	1.80
90658817--90659003	49	3.8	49	80	2	239	26	18	25	29	1.98
90658812--90658999	100	1.9	100	96	0	349	26	19	25	29	1.98
90660951--90661456	251	2.0	250	96	0	940	34	12	20	32	1.90
90662206--90662257	15	3.5	15	73	26	56	17	9	11	61	1.55
90664733--90664912	100	1.8	100	95	0	324	25	18	27	29	1.98
90664736--90664910	49	3.5	49	79	3	224	25	18	26	29	1.98
90668749--90668973	40	5.7	40	85	5	287	24	22	27	25	2.00
90668756--90669006	79	3.2	79	81	8	226	26	21	27	25	1.99
90674717--90674750	16	2.1	17	88	5	52	0	32	0	67	0.91
90674770--90674808	4	9.5	4	86	5	51	5	17	0	76	0.96
90674773--90674815	12	3.6	12	81	9	52	6	16	0	76	0.99
90674777--90674819	21	2.1	20	86	4	59	9	13	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90676616--90676661	22	2.1	22	87	0	65	30	23	21	23	1.99
90680415--90680491	39	2.0	39	92	0	127	33	12	6	46	1.68
90684914--90684953	19	2.1	19	100	0	80	42	10	0	47	1.37
90696531--90696641	54	2.1	53	89	1	168	17	24	21	36	1.94
90696531--90696641	27	4.2	26	87	5	150	17	24	21	36	1.94
90704383--90704494	27	4.2	26	88	5	152	16	23	22	38	1.93
90704383--90704494	54	2.1	53	89	1	170	16	23	22	38	1.93
90705744--90705795	27	2.0	27	88	3	79	40	21	21	17	1.91
90710063--90710109	19	2.6	18	76	6	58	23	6	0	70	1.10
90717820--90717855	18	2.0	18	100	0	72	38	0	16	44	1.48
90727820--90727859	7	5.7	7	84	0	53	50	2	0	47	1.14
90732507--90732552	23	1.9	23	86	8	65	63	2	2	32	1.19
90732884--90732918	3	11.7	3	100	0	70	68	0	0	31	0.90
90734153--90734204	17	3.1	17	75	2	52	32	1	1	63	1.16
90734184--90734235	19	2.8	20	82	11	65	28	0	1	69	0.99
90734174--90734234	28	2.1	30	81	6	72	24	1	3	70	1.11
90734338--90734402	31	2.1	32	82	8	80	55	3	4	36	1.36
90735436--90735488	21	2.5	22	75	9	56	28	1	7	62	1.33
90735623--90735689	33	2.0	33	97	0	125	14	20	17	46	1.84
90735746--90735787	21	2.0	21	100	0	84	38	9	9	42	1.70
90737664--90737690	5	5.4	5	100	0	54	18	0	0	81	0.69
90737766--90737829	27	2.4	27	100	0	128	28	7	26	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90739622--90739667	15	2.9	15	90	6	65	26	6	0	67	1.15
90739634--90739700	21	3.0	23	76	21	72	29	5	0	64	1.17
90739805--90739866	25	2.5	24	75	17	63	32	9	1	56	1.41
90754367--90754541	46	3.8	44	76	10	172	28	29	20	21	1.98
90756926--90757005	15	5.4	15	76	7	74	57	12	20	10	1.63
90756937--90757014	15	5.2	15	72	9	61	55	14	19	11	1.69
90760783--90760957	46	3.8	45	76	10	183	28	29	20	21	1.98
90760791--90760962	93	1.8	93	90	2	274	27	30	21	20	1.98
90772432--90772456	11	2.3	11	100	0	50	80	8	0	12	0.92
90774070--90774170	29	3.5	29	90	1	150	29	28	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373